1 ;;;; -*- Mode: Lisp; Syntax: ANSI-Common-Lisp; Base: 10; Package: umlisp -*-
2 ;;;; *************************************************************************
3 ;;;; FILE IDENTIFICATION
5 ;;;; Name: classes.lisp
6 ;;;; Purpose: Class defintions for UMLisp
7 ;;;; Programmer: Kevin M. Rosenberg
8 ;;;; Date Started: Apr 2000
10 ;;;; $Id: classes.lisp,v 1.41 2003/06/16 03:23:50 kevin Exp $
12 ;;;; This file, part of UMLisp, is
13 ;;;; Copyright (c) 2000-2003 by Kevin M. Rosenberg, M.D.
15 ;;;; UMLisp users are granted the rights to distribute and use this software
16 ;;;; as governed by the terms of the GNU General Public License.
17 ;;;; *************************************************************************
21 (defclass umlsclass (hyperobject)
23 (:metaclass hyperobject-class)
24 (:description "Parent class of all UMLS objects. It is based on the HYPEROBJECT-CLASS metaclass that provides object printing functions."))
27 (defclass usrl (umlsclass)
28 ((sab :value-type string :initarg :sab :reader sab)
29 (srl :value-type fixnum :initarg :srl :reader srl))
30 (:metaclass hyperobject-class)
31 (:user-name "Source Restriction Level")
32 (:default-print-slots sab srl)
33 (:description "Custom Table: Source Restriction Level"))
36 (defclass urank (umlsclass)
37 ((rank :value-type fixnum :initarg :rank :reader rank)
38 (sab :value-type string :initarg :sab :reader sab)
39 (tty :value-type string :initarg :tty :reader tty)
40 (supres :value-type string :initarg :supres :reader supres))
41 (:metaclass hyperobject-class)
43 (:default-print-slots rank sab tty supres))
45 (defclass udef (umlsclass)
46 ((def :value-type cdata :initarg :def :reader def)
47 (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab))
48 (:metaclass hyperobject-class)
49 (:user-name "Definition")
50 (:default-print-slots sab def))
52 (defclass usat (umlsclass)
53 ((sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
54 (code :value-type string :initarg :code :reader code)
55 (atn :value-type string :initarg :atn :reader atn)
56 (atv :value-type cdata :initarg :atv :reader atv))
57 (:metaclass hyperobject-class)
58 (:user-name "Simple Attribute")
59 (:default-print-slots sab code atn atv))
61 (defclass usab (umlsclass)
62 ((vcui :value-type fixnum :initarg :vcui :reader vcui :print-formatter fmt-cui)
63 (rcui :value-type fixnum :initarg :rcui :reader rcui :print-formatter fmt-cui)
64 (vsab :value-type string :initarg :vsab :reader vsab)
65 (rsab :value-type string :initarg :rsab :reader rsab :hyperlink find-ustr-sab)
66 (son :value-type string :initarg :son :reader son)
67 (sf :value-type string :initarg :sf :reader sf)
68 (sver :value-type string :initarg :sver :reader sver)
69 (mstart :value-type string :initarg :mstart :reader mstart)
70 (mend :value-type string :initarg :mend :reader mend)
71 (imeta :value-type string :initarg :imeta :reader imeta)
72 (rmeta :value-type string :initarg :rmeta :reader rmeta)
73 (slc :value-type cdata :initarg :slc :reader slc)
74 (scc :value-type cdata :initarg :scc :reader scc)
75 (srl :value-type fixnum :initarg :srl :reader srl)
76 (tfr :value-type fixnum :initarg :tfr :reader tfr :print-formatter fmt-comma-integer)
77 (cfr :value-type fixnum :initarg :cfr :reader cfr :print-formatter fmt-comma-integer)
78 (cxty :value-type string :initarg :cxty :reader cxty)
79 (ttyl :value-type string :initarg :ttyl :reader ttyl)
80 (atnl :value-type string :initarg :atnl :reader atnl)
81 (lat :value-type string :initarg :lat :reader lat)
82 (cenc :value-type string :initarg :cenc :reader cenc)
83 (curver :value-type string :initarg :curver :reader curver)
84 (sabin :value-type string :initarg :sabin :reader sabin))
85 (:metaclass hyperobject-class)
86 (:user-name "Source Abbreviation")
87 (:default-print-slots vcui rcui vsab rsab son sf sver mstart mend imeta
88 rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc
91 (defclass uso (umlsclass)
92 ((sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
93 (code :value-type string :initarg :code :reader code)
94 (tty :value-type string :initarg :tty :reader tty :hyperlink find-btty-tty)
95 (srl :value-type fixnum :initarg :srl :reader srl))
96 (:metaclass hyperobject-class)
98 (:default-print-slots sab code tty srl))
100 (defclass ucxt (umlsclass)
101 ((sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
102 (code :value-type string :initarg :code :reader code)
103 (rnk :value-type fixnum :initarg :rnk :reader rnk)
104 (cxn :value-type fixnum :initarg :cxn :reader cxn)
105 (cxl :value-type string :initarg :cxl :reader cxl)
106 (cxs :value-type cdata :initarg :cxs :reader cxs)
107 (cui2 :value-type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-cui
108 :print-formatter fmt-cui)
109 (hcd :value-type string :initarg :hcd :reader hcd)
110 (rela :value-type string :initarg :rela :reader rela)
111 (xc :value-type string :initarg :xc :reader xc))
112 (:metaclass hyperobject-class)
113 (:user-name "Context")
114 (:default-print-slots sab code rnk cxn cxl hcd rela xc cui2 cxs))
116 (defclass ustr (umlsclass)
117 ((sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui
118 :hyperlink find-ustr-sui)
119 (cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
120 :hyperlink find-ucon-cui)
121 (lui :value-type fixnum :initarg :lui :reader lui :print-formatter fmt-lui
122 :hyperlink find-uterm-lui)
123 (cuisui :value-type integer :initarg :cuisui :reader cuisui )
124 (str :value-type cdata :initarg :str :reader str)
125 (lrl :value-type fixnum :initarg :lrl :reader lrl)
126 (stt :value-type string :initarg :stt :reader stt)
127 (s#so :reader s#so :subobject (find-uso-cuisui cui sui))
128 (s#sat :reader s#sat :subobject (find-usat-ui cui lui sui))
129 (s#cxt :reader s#cxt :subobject (find-ucxt-cuisui cui sui)))
130 (:metaclass hyperobject-class)
131 (:user-name "String")
132 (:default-print-slots sui stt lrl str))
134 (defclass ulo (umlsclass)
135 ((isn :value-type string :initarg :isn :reader isn)
136 (fr :value-type fixnum :initarg :fr :reader fr)
137 (un :value-type string :initarg :un :reader un)
138 (sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui)
139 (sna :value-type string :initarg :sna :reader sna)
140 (soui :value-type string :initarg :soui :reader soui))
141 (:metaclass hyperobject-class)
142 (:user-name "Locator")
143 (:default-print-slots isn fr un sna soui sui))
145 (defclass uterm (umlsclass)
146 ((lui :value-type fixnum :initarg :lui :reader lui :print-formatter fmt-lui
147 :hyperlink find-uterm-lui)
148 (cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
149 :hyperlink find-ucon-cui)
150 (lat :value-type string :initarg :lat :reader lat)
151 (ts :value-type string :initarg :ts :reader ts)
152 (lrl :value-type fixnum :initarg :lrl :reader lrl)
153 (s#str :reader s#str :subobject (find-ustr-cuilui cui lui))
154 (s#sat :reader s#sat :subobject (find-usat-ui cui lui)))
155 (:metaclass hyperobject-class)
157 (:default-print-slots lui lat ts lrl))
159 (defclass usty (umlsclass)
160 ((tui :value-type fixnum :initarg :tui :reader tui :print-formatter fmt-tui
161 :hyperlink find-ucon-tui
162 :hyperlink-parameters (("subobjects" . "no")))
163 (sty :value-type string :initarg :sty :reader sty))
164 (:metaclass hyperobject-class)
165 (:user-name "Semantic Type")
166 (:default-print-slots tui sty))
168 (defclass urel (umlsclass)
169 ((rel :value-type string :initarg :rel :reader rel :hyperlink find-brel-rel)
170 (cui1 :value-type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
171 (cui2 :value-type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-sui
172 :print-formatter fmt-cui)
173 (pfstr2 :value-type cdata :initarg :pfstr2 :reader pfstr2)
174 (rela :value-type string :initarg :rela :reader rela)
175 (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
176 (sl :value-type string :initarg :sl :reader sl)
177 (mg :value-type string :initarg :mg :reader mg))
178 (:metaclass hyperobject-class)
179 (:user-name "Relationship")
180 (:default-print-slots rel rela sab sl mg cui2 pfstr2))
182 (defclass ucoc (umlsclass)
183 ((cui1 :value-type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
184 (cui2 :value-type fixnum :initarg :cui2 :reader cui2 :print-formatter fmt-cui
185 :hyperlink find-ucon-cui)
186 (pfstr2 :value-type cdata :initarg :pfstr2 :reader pfstr2)
187 (soc :value-type string :initarg :soc :reader soc)
188 (cot :value-type string :initarg :cot :reader cot)
189 (cof :value-type fixnum :initarg :cof :reader cof)
190 (coa :value-type cdata :initarg :coa :reader coa))
191 (:metaclass hyperobject-class)
192 (:user-name "Co-occuring Concept")
193 (:default-print-slots soc cot cof coa cui2 pfstr2))
196 (defclass uatx (umlsclass)
197 ((sab :value-type string :initarg :sab :reader sab)
198 (rel :value-type string :initarg :rel :reader rel)
199 (atx :value-type cdata :initarg :atx :reader atx))
200 (:metaclass hyperobject-class)
201 (:user-name "Associated Expression")
202 (:default-print-slots sab rel atx))
204 (defclass ucon (umlsclass)
205 ((cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
206 :hyperlink find-ucon-cui)
207 (lrl :value-type fixnum :initarg :lrl :reader lrl)
208 (pfstr :value-type cdata :initarg :pfstr :reader pfstr)
209 (s#def :reader s#def :subobject (find-udef-cui cui))
210 (s#sty :reader s#sty :subobject (find-usty-cui cui))
211 (s#atx :reader s#atx :subobject (find-uatx-cui cui))
212 (s#lo :reader s#lo :subobject (find-ulo-cui cui))
213 (s#term :reader s#term :subobject (find-uterm-cui cui))
214 (s#sat :reader s#sat :subobject (find-usat-ui cui))
215 (s#rel :reader s#rel :subobject (find-urel-cui cui))
216 (s#coc :reader s#coc :subobject (find-ucoc-cui cui)))
217 (:metaclass hyperobject-class)
218 (:user-name "Concept")
219 (:default-print-slots cui lrl pfstr))
221 (defclass uxw (umlsclass)
222 ((wd :value-type string :initarg :wd :reader wd)
223 (cui :value-type fixnum :initform nil :initarg :cui :reader cui :print-formatter fmt-cui)
224 (lui :value-type fixnum :initform nil :initarg :lui :reader lui :print-formatter fmt-lui)
225 (sui :value-type fixnum :initform nil :initarg :sui :reader sui :print-formatter fmt-sui))
226 (:metaclass hyperobject-class)
227 (:user-name "XW Index" "XW Indices")
228 (:default-print-slots wd cui lui sui))
230 (defclass uxw-noneng (umlsclass)
231 ((lat :value-type string :initarg :lat :reader lat)
232 (wd :value-type string :initarg :wd :reader wd)
233 (cui :value-type fixnum :initform nil :initarg :cui :reader cui :print-formatter fmt-cui)
234 (lui :value-type fixnum :initform nil :initarg :lui :reader lui :print-formatter fmt-lui)
235 (sui :value-type fixnum :initform nil :initarg :sui :reader sui :print-formatter fmt-sui)
236 (lrl :value-type fixnum :initform nil :initarg :lrl :reader lrl))
237 (:metaclass hyperobject-class)
238 (:user-name "XW Non-English Index" "XW Non-English Indices")
239 (:default-print-slots wd cui lui sui))
241 (defclass uxnw (umlsclass)
242 ((lat :value-type string :initarg :lat :reader lat)
243 (nwd :value-type string :initarg :nwd :reader nwd)
244 (cuilist :value-type list :initarg :cuilist :reader uxnw-cuilist))
245 (:metaclass hyperobject-class)
246 (:user-name "XNW Index" "XNW Indices")
247 (:default-print-slots lat nwd cuilist))
249 (defclass uxns (umlsclass)
250 ((lat :value-type string :initarg :lat :reader lat)
251 (nstr :value-type string :initarg :nstr :reader nstr)
252 (cuilist :value-type list :initarg :cuilist :reader cuilist))
253 (:metaclass hyperobject-class)
254 (:user-name "XNS Index" "XNS Indices")
255 (:default-print-slots lat nstr cuilist))
260 (defclass lexterm (umlsclass)
261 ((eui :value-type fixnum :initarg :eui :reader eui :print-formatter fmt-eui
262 :hyperlink find-lexterm-eui)
263 (wrd :value-type string :initarg :wrd :reader wrd)
264 (s#abr :reader s#abr :subobject (find-labr-eui eui))
265 (s#agr :reader s#agr :subobject (find-lagr-eui eui))
266 (s#cmp :reader s#cmp :subobject (find-lcmp-eui eui))
267 (s#mod :reader s#mod :subobject (find-lmod-eui eui))
268 (s#nom :reader s#nom :subobject (find-lnom-eui eui))
269 (s#prn :reader s#prn :subobject (find-lprn-eui eui))
270 (s#prp :reader s#prp :subobject (find-lprp-eui eui))
271 (s#spl :reader s#spl :subobject (find-lspl-eui eui))
272 (s#trm :reader s#trm :subobject (find-ltrm-eui eui))
273 (s#typ :reader s#typ :subobject (find-ltyp-eui eui)))
274 (:metaclass hyperobject-class)
275 (:user-name "Lexical Term")
276 (:default-print-slots eui wrd))
279 (defclass labr (umlsclass)
280 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
281 (bas :value-type string :initarg :bas :reader bas)
282 (abr :value-type string :initarg :abr :reader abr)
283 (eui2 :value-type integer :initarg :eui2 :reader eui2 :print-formatter fmt-eui)
284 (bas2 :value-type string :initarg :bas2 :reader bas2))
285 (:metaclass hyperobject-class)
286 (:user-name "Abbreviations and Acronym")
287 (:default-print-slots eui bas abr eui2 bas2))
289 (defclass lagr (umlsclass)
290 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
291 (str :value-type string :initarg :str :reader str)
292 (sca :value-type string :initarg :sca :reader sca)
293 (agr :value-type string :initarg :agr :reader agr)
294 (cit :value-type string :initarg :cit :reader cit)
295 (bas :value-type string :initarg :bas :reader bas))
296 (:metaclass hyperobject-class)
297 (:user-name "Agreement and Inflection")
298 (:default-print-slots eui str sca agr cit bas))
300 (defclass lcmp (umlsclass)
301 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
302 (bas :value-type string :initarg :bas :reader bas)
303 (sca :value-type string :initarg :sca :reader sca)
304 (com :value-type string :initarg :com :reader com))
305 (:metaclass hyperobject-class)
306 (:user-name "Complementation")
307 (:default-print-slots eui bas sca com))
309 (defclass lmod (umlsclass)
310 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
311 (bas :value-type string :initarg :bas :reader bas)
312 (sca :value-type string :initarg :sca :reader sca)
313 (psnmod :value-type string :initarg :psnmod :reader psnmod)
314 (fea :value-type string :initarg :fea :reader fea))
315 (:metaclass hyperobject-class)
316 (:user-name "Modifier")
317 (:default-print-slots eui bas sca psnmod fea))
319 (defclass lnom (umlsclass)
320 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
321 (bas :value-type string :initarg :bas :reader bas)
322 (sca :value-type string :initarg :sca :reader sca)
323 (eui2 :value-type integer :initarg :eui2 :reader eui2 :print-formatter fmt-eui)
324 (bas2 :value-type string :initarg :bas2 :reader bas2)
325 (sca2 :value-type string :initarg :sca2 :reader sca2))
326 (:metaclass hyperobject-class)
327 (:user-name "Nominalization")
328 (:default-print-slots eui bas sca eui2 bas2 sca2))
330 (defclass lprn (umlsclass)
331 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
332 (bas :value-type string :initarg :bas :reader bas)
333 (num :value-type string :initarg :num :reader num)
334 (gnd :value-type string :initarg :gnd :reader gnd)
335 (cas :value-type string :initarg :cas :reader cas)
336 (pos :value-type string :initarg :pos :reader pos)
337 (qnt :value-type string :initarg :qnt :reader qnt)
338 (fea :value-type string :initarg :fea :reader fea))
339 (:metaclass hyperobject-class)
340 (:user-name "Pronoun")
341 (:default-print-slots eui bas num gnd cas pos qnt fea))
343 (defclass lprp (umlsclass)
344 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
345 (bas :value-type string :initarg :bas :reader bas)
346 (str :value-type string :initarg :str :reader str)
347 (sca :value-type string :initarg :sca :reader sca)
348 (fea :value-type string :initarg :fea :reader fea))
349 (:metaclass hyperobject-class)
350 (:user-name "Property" "Properties")
351 (:default-print-slots eui bas str sca fea))
354 (defclass lspl (umlsclass)
355 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
356 (spv :value-type string :initarg :spv :reader spv)
357 (bas :value-type string :initarg :bas :reader bas))
358 (:metaclass hyperobject-class)
359 (:user-name "Spelling Variant")
360 (:default-print-slots eui spv bas))
363 (defclass ltrm (umlsclass)
364 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
365 (bas :value-type string :initarg :bas :reader bas)
366 (gen :value-type string :initarg :gen :reader gen))
367 (:metaclass hyperobject-class)
368 (:user-name "Trade Mark")
369 (:default-print-slots eui bas gen))
371 (defclass ltyp (umlsclass)
372 ((eui :value-type integer :initarg :eui :reader eui :print-formatter fmt-eui)
373 (bas :value-type string :initarg :bas :reader bas)
374 (sca :value-type string :initarg :sca :reader sca)
375 (typ :value-type string :initarg :typ :reader typ))
376 (:metaclass hyperobject-class)
377 (:user-name "Inflection Type")
378 (:default-print-slots eui bas sca typ))
380 (defclass lwd (umlsclass)
381 ((wrd :value-type string :initarg :wrd :reader wrd)
382 (euilist :value-type list :initarg :euilist :reader euilist))
383 (:metaclass hyperobject-class)
384 (:user-name "Lexical Word Index" "Lexical Word Indices")
385 (:default-print-slots wrd euilist))
387 ;;; Semantic NET objects
389 (defclass sdef (umlsclass)
390 ((rt :value-type string :initarg :rt :reader rt)
391 (ui :value-type integer :initarg :ui :reader ui :print-formatter fmt-tui)
392 (styrl :value-type string :initarg :styrl :reader styrl)
393 (stnrtn :value-type string :initarg :stnrtn :reader stnrtn)
394 (def :value-type string :initarg :def :reader def)
395 (ex :value-type string :initarg :ex :reader ex)
396 (un :value-type string :initarg :un :reader un)
397 (rh :value-type string :initarg :rh :reader rh)
398 (abr :value-type string :initarg :abr :reader abr)
399 (rin :value-type string :initarg :rin :reader rin))
400 (:metaclass hyperobject-class)
401 (:user-name "Basic information about Semantic Types and Relation")
402 (:default-print-slots rt ui styrl stnrtn def ex un rh abr rin))
404 (defclass sstr (umlsclass)
405 ((styrl :value-type string :initarg :styrl :reader styrl)
406 (rl :value-type string :initarg :rl :reader rl)
407 (styrl2 :value-type string :initarg :styrl2 :reader styrl2)
408 (ls :value-type string :initarg :ls :reader ls))
409 (:metaclass hyperobject-class)
410 (:user-name "Structure of the Network")
411 (:default-print-slots styrl rl styrl2 ls))
413 (defclass sstre1 (umlsclass)
414 ((ui :value-type integer :initarg :ui :reader ui :print-formatter fmt-tui)
415 (ui2 :value-type integer :initarg :ui2 :reader ui2 :print-formatter fmt-tui)
416 (ui3 :value-type integer :initarg :ui3 :reader ui3 :print-formatter fmt-tui))
417 (:metaclass hyperobject-class)
418 (:user-name "Fully Inherited Set of Relation (TUIs)"
419 "Fully Inherited Set of Relations (TUIs)")
420 (:default-print-slots ui ui2 ui3))
422 (defclass sstre2 (umlsclass)
423 ((sty :value-type string :initarg :ui :reader sty)
424 (rl :value-type string :initarg :ui2 :reader rl)
425 (sty2 :value-type string :initarg :ui3 :reader sty2))
426 (:metaclass hyperobject-class)
427 (:user-name "Fully Inherited Set of Relation (strings)"
428 "Fully Inherited Set of Relations (strings)")
429 (:default-print-slots sty rl sty2))