X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;ds=sidebyside;f=sql-classes.lisp;fp=sql-classes.lisp;h=f3bc2688f0ad689da6f636bfeebfef960df216c1;hb=1e348ab8a58095fafac025161fc172626c466949;hp=70efa9219ff5b959d8aae388265951a2d54a3a98;hpb=d8ba6e3d4c5713fd1629317022cec8150340545a;p=umlisp-orf.git diff --git a/sql-classes.lisp b/sql-classes.lisp index 70efa92..f3bc268 100644 --- a/sql-classes.lisp +++ b/sql-classes.lisp @@ -26,49 +26,49 @@ (setq *current-srl* srl)) (defmacro query-string (table fields &optional srl where-name where-value - &key (lrl "KCUILRL") single distinct order like) + &key (lrl "KCUILRL") single distinct order like) (let* ((%%fields (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)" - (if distinct "distinct " "") fields table)) - (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" - order) - "")) - (%%lrl (format nil " and ~:@(~A~)<=" lrl)) - (%%where (when where-name - (format nil " where ~:@(~A~)~A" where-name - (if like " like " ""))))) + (if distinct "distinct " "") fields table)) + (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" + order) + "")) + (%%lrl (format nil " and ~:@(~A~)<=" lrl)) + (%%where (when where-name + (format nil " where ~:@(~A~)~A" where-name + (if like " like " ""))))) `(concatenate 'string ,%%fields ,@(when %%where (list %%where)) ,@(when %%where - `((typecase ,where-value - (fixnum - (concatenate 'string "='" (prefixed-fixnum-string ,where-value #\0 10) "'")) - (number - (concatenate 'string "='" (write-to-string ,where-value) "'")) - (null - " is null") - (t - (format nil ,(if like "'%~A%'" "='~A'") ,where-value))))) + `((typecase ,where-value + (fixnum + (concatenate 'string "='" (prefixed-fixnum-string ,where-value #\0 10) "'")) + (number + (concatenate 'string "='" (write-to-string ,where-value) "'")) + (null + " is null") + (t + (format nil ,(if like "'%~A%'" "='~A'") ,where-value))))) (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "") ,@(when %%order (list %%order)) ,@(when single (list " limit 1"))))) (defun query-string-eval (table fields &optional srl where-name where-value - &key (lrl "KCUILRL") single distinct order like) + &key (lrl "KCUILRL") single distinct order like) (concatenate 'string - (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)" - (if distinct "distinct " "") fields table) + (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)" + (if distinct "distinct " "") fields table) (if where-name (format nil " where ~:@(~A~)" where-name) "") (if where-name (format nil - (typecase where-value - (number "=~D") - (null " is null") - (t - (if like " like '%~A%""='~A'"))) - where-value) + (typecase where-value + (number "=~D") + (null " is null") + (t + (if like " like '%~A%""='~A'"))) + where-value) "") (if srl (format nil " and ~:@(~A~)<=~D" lrl srl) "") (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) "") @@ -76,84 +76,84 @@ (defmacro umlisp-query (table fields srl where-name where-value - &key (lrl "KCUILRL") single distinct order like - (query-cmd 'mutex-sql-query)) + &key (lrl "KCUILRL") single distinct order like + (query-cmd 'mutex-sql-query)) "Query the UMLisp database. Return a list of umlisp objects whose name is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" `(,query-cmd - (query-string ,table ,fields ,srl ,where-name ,where-value + (query-string ,table ,fields ,srl ,where-name ,where-value :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like))) (defmacro umlisp-query-eval (table fields srl where-name where-value - &key (lrl "KCUILRL") single distinct order like) + &key (lrl "KCUILRL") single distinct order like) "Query the UMLisp database. Return a list of umlisp objects whose name is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" `(mutex-sql-query - (query-string-eval ,table ,fields ,srl ,where-name ,where-value + (query-string-eval ,table ,fields ,srl ,where-name ,where-value :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like))) ;; only WHERE-VALUE and SRL are evaluated (defmacro collect-umlisp-query ((table fields srl where-name where-value - &key (lrl "KCUILRL") distinct single - order like (query-cmd 'mutex-sql-query)) - &body body) + &key (lrl "KCUILRL") distinct single + order like (query-cmd 'mutex-sql-query)) + &body body) (let ((value (gensym)) - (r (gensym))) + (r (gensym))) (if single - `(let* ((,value ,where-value) - (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value - :lrl ,lrl :single ,single - :distinct ,distinct :order ,order - :like ,like - :query-cmd ,query-cmd)))) - ,@(unless where-name `((declare (ignore ,value)))) - (when tuple - (destructuring-bind ,fields tuple - ,@body))) - `(let ((,value ,where-value)) - ,@(unless where-name `((declare (ignore ,value)))) - (let ((,r '())) - (dolist (tuple (umlisp-query ,table ,fields ,srl ,where-name ,value - :lrl ,lrl :single ,single :distinct ,distinct - :order ,order :like ,like)) - (push (destructuring-bind ,fields tuple ,@body) ,r)) - (nreverse ,r)) - #+ignore - (loop for tuple in - (umlisp-query ,table ,fields ,srl ,where-name ,value - :lrl ,lrl :single ,single :distinct ,distinct - :order ,order :like ,like) - collect (destructuring-bind ,fields tuple ,@body)))))) + `(let* ((,value ,where-value) + (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single + :distinct ,distinct :order ,order + :like ,like + :query-cmd ,query-cmd)))) + ,@(unless where-name `((declare (ignore ,value)))) + (when tuple + (destructuring-bind ,fields tuple + ,@body))) + `(let ((,value ,where-value)) + ,@(unless where-name `((declare (ignore ,value)))) + (let ((,r '())) + (dolist (tuple (umlisp-query ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like)) + (push (destructuring-bind ,fields tuple ,@body) ,r)) + (nreverse ,r)) + #+ignore + (loop for tuple in + (umlisp-query ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like) + collect (destructuring-bind ,fields tuple ,@body)))))) (defmacro collect-umlisp-query-eval ((table fields srl where-name where-value - &key (lrl "KCUILRL") distinct single - order like) - &body body) + &key (lrl "KCUILRL") distinct single + order like) + &body body) (let ((value (gensym)) - (r (gensym)) - (eval-fields (cadr fields))) + (r (gensym)) + (eval-fields (cadr fields))) (if single - `(let* ((,value ,where-value) - (tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value - :lrl ,lrl :single ,single - :distinct ,distinct :order ,order - :like ,like)))) - (when tuple - (destructuring-bind ,eval-fields tuple - ,@body))) - `(let ((,value ,where-value) - (,r '())) - (dolist (tuple (umlisp-query-eval ,table ,fields ,srl ,where-name ,value - :lrl ,lrl :single ,single :distinct ,distinct - :order ,order :like ,like)) - (push (destructuring-bind ,eval-fields tuple ,@body) ,r)) - (nreverse ,r) - #+ignore - (loop for tuple in - (umlisp-query-eval ,table ,fields ,srl ,where-name ,value - :lrl ,lrl :single ,single :distinct ,distinct - :order ,order :like ,like) - collect (destructuring-bind ,eval-fields tuple ,@body)))))) + `(let* ((,value ,where-value) + (tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single + :distinct ,distinct :order ,order + :like ,like)))) + (when tuple + (destructuring-bind ,eval-fields tuple + ,@body))) + `(let ((,value ,where-value) + (,r '())) + (dolist (tuple (umlisp-query-eval ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like)) + (push (destructuring-bind ,eval-fields tuple ,@body) ,r)) + (nreverse ,r) + #+ignore + (loop for tuple in + (umlisp-query-eval ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like) + collect (destructuring-bind ,eval-fields tuple ,@body)))))) ;;; ;;; Read from SQL database @@ -188,14 +188,14 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (ensure-cui-integer cui) (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl cui cui :single t) (make-instance 'ucon :cui cui :pfstr kpfstr - :lrl (ensure-integer kcuilrl)))) + :lrl (ensure-integer kcuilrl)))) (defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*)) "Find ucon for a cui" (ensure-cui-integer cui) (collect-umlisp-query (mrcon (kcuilrl) srl cui cui :single t) (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl) - :pfstr nil))) + :pfstr nil))) (defun find-pfstr-cui (cui &key (srl *current-srl*)) "Find preferred string for a cui" @@ -207,16 +207,16 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" "Find list of ucon for lui" (ensure-lui-integer lui) (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui lui - :distinct t) + :distinct t) (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr - :lrl (ensure-integer kcuilrl)))) + :lrl (ensure-integer kcuilrl)))) (defun find-ucon-sui (sui &key (srl *current-srl*)) "Find list of ucon for sui" (ensure-sui-integer sui) (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui sui :distinct t) (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr - :lrl (ensure-integer kcuilrl)))) + :lrl (ensure-integer kcuilrl)))) (defun find-ucon-cuisui (cui sui &key (srl *current-srl*)) "Find ucon for cui/sui" @@ -224,58 +224,58 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (ensure-sui-integer sui) (when (and cui sui) (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl kcuisui - (make-cuisui cui sui)) + (make-cuisui cui sui)) (make-instance 'ucon :cui cui - :pfstr kpfstr - :lrl (ensure-integer kcuilrl))))) + :pfstr kpfstr + :lrl (ensure-integer kcuilrl))))) (defun find-ucon-str (str &key (srl *current-srl*)) "Find ucon that are exact match for str" (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t) (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr - :lrl (ensure-integer kcuilrl)))) + :lrl (ensure-integer kcuilrl)))) (defun find-ucon-all (&key (srl *current-srl*)) "Return list of all ucon's" (with-sql-connection (db) - (clsql:map-query + (clsql:map-query 'list #'(lambda (tuple) - (destructuring-bind (cui pfstr cuilrl) tuple - (make-instance 'ucon :cui (ensure-integer cui) - :pfstr pfstr - :lrl (ensure-integer cuilrl)))) + (destructuring-bind (cui pfstr cuilrl) tuple + (make-instance 'ucon :cui (ensure-integer cui) + :pfstr pfstr + :lrl (ensure-integer cuilrl)))) (query-string mrcon (cui kpfstr kcuilrl) srl nil nil - :order (cui asc) :distinct t) + :order (cui asc) :distinct t) :database db))) (defun find-ucon-all2 (&key (srl *current-srl*)) "Return list of all ucon's" (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc) - :distinct t) + :distinct t) (make-instance 'ucon :cui (ensure-integer cui) - :pfstr kpfstr - :lrl (ensure-integer kcuilrl)))) + :pfstr kpfstr + :lrl (ensure-integer kcuilrl)))) (defun find-cui-ucon-all (&key (srl *current-srl*)) "Return list of CUIs for all ucons" (collect-umlisp-query (mrcon (cui) srl nil nil :order (cui asc) - :distinct t) - cui)) + :distinct t) + cui)) (defun map-ucon-all (fn &key (srl *current-srl*)) "Map a function over all ucon's" (with-sql-connection (db) - (clsql:map-query + (clsql:map-query nil #'(lambda (tuple) - (destructuring-bind (cui pfstr cuilrl) tuple - (funcall fn - (make-instance 'ucon :cui (ensure-integer cui) - :pfstr pfstr - :lrl (ensure-integer cuilrl))))) + (destructuring-bind (cui pfstr cuilrl) tuple + (funcall fn + (make-instance 'ucon :cui (ensure-integer cui) + :pfstr pfstr + :lrl (ensure-integer cuilrl))))) (query-string mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc) - :distinct t) + :distinct t) :database db))) @@ -294,65 +294,65 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-usty-word (word &key (srl *current-srl*)) "Return a list of usty that match word" (collect-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t - :distinct t) + :distinct t) (make-instance 'usty :tui (ensure-integer tui) :sty sty))) (defun find-urel-cui (cui &key (srl *current-srl*)) "Return a list of urel for cui" (ensure-cui-integer cui) (collect-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1 - cui :lrl "KSRL") + cui :lrl "KSRL") (make-instance 'urel :cui1 cui :rel rel - :cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl - :mg mg :pfstr2 kpfstr2))) + :cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl + :mg mg :pfstr2 kpfstr2))) (defun find-cui2-urel-cui (cui &key (srl *current-srl*)) "Return a list of urel for cui" (ensure-cui-integer cui) (collect-umlisp-query (mrrel (cui2) srl cui1 - cui :lrl "KSRL") - cui2)) + cui :lrl "KSRL") + cui2)) (defun find-urel-cui2 (cui2 &key (srl *current-srl*)) "Return a list of urel for cui2" (ensure-cui-integer cui2) (collect-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2 - cui2 :lrl "KSRL") + cui2 :lrl "KSRL") (make-instance 'urel :cui2 cui2 :rel rel - :cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl - :mg mg :pfstr2 kpfstr2))) + :cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl + :mg mg :pfstr2 kpfstr2))) (defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*)) (ensure-cui-integer cui2) (loop for cui in (remove-duplicates - (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl))) - collect (find-ucon-cui cui :srl srl))) + (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl))) + collect (find-ucon-cui cui :srl srl))) (defun find-ucoc-cui (cui &key (srl *current-srl*)) "Return a list of ucoc for cui" (ensure-cui-integer cui) (collect-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1 - cui :lrl klrl :order (cof asc)) + cui :lrl klrl :order (cof asc)) (setq cui2 (ensure-integer cui2)) (when (eql 0 cui2) (setq cui2 nil)) (make-instance 'ucoc :cui1 cui :cui2 (ensure-integer cui2) - :soc soc :cot cot :cof (ensure-integer cof) :coa coa - :pfstr2 kpfstr2))) + :soc soc :cot cot :cof (ensure-integer cof) :coa coa + :pfstr2 kpfstr2))) (defun find-ucoc-cui2 (cui2 &key (srl *current-srl*)) "Return a list of ucoc for cui2" (ensure-cui-integer cui2) (collect-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2 - cui2 :lrl klrl :order (cof asc)) + cui2 :lrl klrl :order (cof asc)) (when (zerop cui2) (setq cui2 nil)) (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 cui2 - :soc soc :cot cot :cof (ensure-integer cof) :coa coa - :pfstr2 kpfstr2))) + :soc soc :cot cot :cof (ensure-integer cof) :coa coa + :pfstr2 kpfstr2))) (defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*)) "List of ucon with co-occurance cui2" (ensure-cui-integer cui2) - (mapcar + (mapcar #'(lambda (cui) (find-ucon-cui cui :srl srl)) (remove-duplicates (mapcar #'cui1 (find-ucoc-cui2 cui2 :srl srl))))) @@ -360,9 +360,9 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" "Return a list of ulo for cui" (ensure-cui-integer cui) (collect-umlisp-query (mrlo (isn fr un sui sna soui) srl cui cui - :lrl "KLRL") + :lrl "KLRL") (make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un - :sui (ensure-integer sui) :sna sna :soui soui))) + :sui (ensure-integer sui) :sna sna :soui soui))) (defun find-uatx-cui (cui &key (srl *current-srl*)) "Return a list of uatx for cui" @@ -375,82 +375,82 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" "Return a list of uterm for cui" (ensure-cui-integer cui) (collect-umlisp-query (mrcon (lui lat ts kluilrl) srl cui cui - :lrl kluilrl :distinct t) + :lrl kluilrl :distinct t) (make-instance 'uterm :lui (ensure-integer lui) :cui cui - :lat lat :ts ts :lrl (ensure-integer kluilrl)))) + :lat lat :ts ts :lrl (ensure-integer kluilrl)))) (defun find-uterm-lui (lui &key (srl *current-srl*)) "Return a list of uterm for lui" (ensure-lui-integer lui) - (collect-umlisp-query (mrcon (cui lat ts kluilrl) srl lui lui - :lrl kluilrl :distinct t) + (collect-umlisp-query (mrcon (cui lat ts kluilrl) srl lui lui + :lrl kluilrl :distinct t) (make-instance 'uterm :cui (ensure-integer cui) :lui lui - :lat lat :ts ts :lrl (ensure-integer kluilrl)))) + :lat lat :ts ts :lrl (ensure-integer kluilrl)))) (defun find-uterm-cuilui (cui lui &key (srl *current-srl*)) "Return single uterm for cui/lui" (ensure-cui-integer cui) (ensure-lui-integer lui) (collect-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui - (make-cuilui cui lui) - :lrl kluilrl :single t) + (make-cuilui cui lui) + :lrl kluilrl :single t) (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts - :lrl (ensure-integer kluilrl)))) + :lrl (ensure-integer kluilrl)))) (defun find-ustr-cuilui (cui lui &key (srl *current-srl*)) "Return a list of ustr for cui/lui" (ensure-cui-integer cui) (ensure-lui-integer lui) (collect-umlisp-query (mrcon (sui stt str lrl) srl kcuilui - (make-cuilui cui lui) :lrl lrl) + (make-cuilui cui lui) :lrl lrl) (make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui - :cuisui (make-cuisui cui sui) :stt stt :str str - :lrl (ensure-integer lrl)))) + :cuisui (make-cuisui cui sui) :stt stt :str str + :lrl (ensure-integer lrl)))) (defun find-ustr-cuisui (cui sui &key (srl *current-srl*)) "Return the single ustr for cuisui" (ensure-cui-integer cui) (ensure-sui-integer sui) (collect-umlisp-query (mrcon (lui stt str lrl) srl kcuisui - (make-cuisui cui sui) :lrl lrl :single t) + (make-cuisui cui sui) :lrl lrl :single t) (make-instance 'ustr :sui sui :cui cui :cuisui (make-cuisui cui sui) - :lui (ensure-integer lui) :stt stt :str str - :lrl (ensure-integer lrl)))) + :lui (ensure-integer lui) :stt stt :str str + :lrl (ensure-integer lrl)))) (defun find-ustr-sui (sui &key (srl *current-srl*)) "Return the list of ustr for sui" (ensure-sui-integer sui) (collect-umlisp-query (mrcon (cui lui stt str lrl) srl sui sui - :lrl lrl) + :lrl lrl) (make-instance 'ustr :sui sui :cui cui :stt stt :str str - :cuisui (make-cuisui (ensure-integer cui) sui) - :lui (ensure-integer lui) :lrl (ensure-integer lrl)))) - + :cuisui (make-cuisui (ensure-integer cui) sui) + :lui (ensure-integer lui) :lrl (ensure-integer lrl)))) + (defun find-ustr-sab (sab &key (srl *current-srl*)) "Return the list of ustr for sab" (collect-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl) (let ((cuisui (ensure-integer kcuisui))) - (apply #'find-ustr-cuisui - (append - (multiple-value-list (decompose-cuisui cuisui)) - (list :srl srl)))))) + (apply #'find-ustr-cuisui + (append + (multiple-value-list (decompose-cuisui cuisui)) + (list :srl srl)))))) (defun find-ustr-all (&key (srl *current-srl*)) "Return list of all ustr's" (with-sql-connection (db) - (clsql:map-query + (clsql:map-query 'list #'(lambda (tuple) - (destructuring-bind (cui lui sui stt lrl pfstr) tuple - (make-instance 'ustr :cui (ensure-integer cui) - :lui (ensure-integer lui) :sui (ensure-integer sui) - :stt stt :str pfstr - :cuisui (make-cuisui (ensure-integer cui) - (ensure-integer sui)) - :lrl (ensure-integer lrl)))) + (destructuring-bind (cui lui sui stt lrl pfstr) tuple + (make-instance 'ustr :cui (ensure-integer cui) + :lui (ensure-integer lui) :sui (ensure-integer sui) + :stt stt :str pfstr + :cuisui (make-cuisui (ensure-integer cui) + (ensure-integer sui)) + :lrl (ensure-integer lrl)))) (query-string mrcon (cui lui sui stt lrl kpfstr) srl nil nil :lrl lrl - :distinct t - :order (sui asc)) + :distinct t + :order (sui asc)) :database db))) (defun find-string-sui (sui &key (srl *current-srl*)) @@ -463,18 +463,18 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (ensure-sui-integer sui) (ensure-cui-integer cui) (collect-umlisp-query (mrso (sab code srl tty) srl kcuisui - (make-cuisui cui sui) :lrl srl) + (make-cuisui cui sui) :lrl srl) (make-instance 'uso :sab sab :code code :srl srl :tty tty))) (defun find-ucxt-cuisui (cui sui &key (srl *current-srl*)) (ensure-cui-integer cui) (ensure-sui-integer sui) (collect-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc) - srl kcuisui (make-cuisui cui sui) :lrl ksrl) + srl kcuisui (make-cuisui cui sui) :lrl ksrl) (make-instance 'ucxt :sab sab :code code - :cxn (ensure-integer cxn) :cxl cxl :cxs cxs :hcd hcd - :rela rela :xc xc :rnk (ensure-integer rnk) - :cui2 (ensure-integer cui2)))) + :cxn (ensure-integer cxn) :cxl cxl :cxs cxs :hcd hcd + :rela rela :xc xc :rnk (ensure-integer rnk) + :cui2 (ensure-integer cui2)))) (defun find-usat-ui (cui &optional (lui nil) (sui nil) &key (srl *current-srl*)) (ensure-cui-integer cui) @@ -483,18 +483,18 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (let ((ls "select CODE,ATN,SAB,ATV from MRSAT where ")) (cond (sui (string-append ls "KCUISUI='" - (integer-string (make-cuisui cui sui) 14) - "'")) + (integer-string (make-cuisui cui sui) 14) + "'")) (lui (string-append ls "KCUILUI='" - (integer-string (make-cuilui cui lui) 14) - "' and sui='0'")) + (integer-string (make-cuilui cui lui) 14) + "' and sui='0'")) (t (string-append ls "cui='" (prefixed-fixnum-string cui nil 7) - "' and lui='0' and sui='0'"))) + "' and lui='0' and sui='0'"))) (when srl (string-append ls " and KSRL<=" (prefixed-fixnum-string srl nil 3))) - (loop for tuple in (mutex-sql-query ls) collect - (destructuring-bind (code atn sab atv) tuple - (make-instance 'usat :code code :atn atn :sab sab :atv atv))))) + (loop for tuple in (mutex-sql-query ls) collect + (destructuring-bind (code atn sab atv) tuple + (make-instance 'usat :code code :atn atn :sab sab :atv atv))))) (defun find-usty-tui (tui) "Find usty for tui" @@ -515,29 +515,29 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-usab-all () "Find usab for a key" (collect-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver vstart vend imeta - rmeta slc scc srl tfr cfr cxty ttyl atnl lat - cenc curver sabin) nil nil nil) - (make-instance 'usab :vcui (ensure-integer vcui) - :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son - :sf sf :sver sver :vstart vstart :vend vend :imeta imeta - :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl) - :tfr (ensure-integer tfr) :cfr (ensure-integer cfr) - :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc - :curver curver :sabin sabin))) + rmeta slc scc srl tfr cfr cxty ttyl atnl lat + cenc curver sabin) nil nil nil) + (make-instance 'usab :vcui (ensure-integer vcui) + :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son + :sf sf :sver sver :vstart vstart :vend vend :imeta imeta + :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl) + :tfr (ensure-integer tfr) :cfr (ensure-integer cfr) + :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc + :curver curver :sabin sabin))) (defun find-usab-by-key (key-name key) "Find usab for a key" (collect-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver vstart - vend imeta rmeta slc scc srl tfr cfr cxty - ttyl atnl lat cenc curver sabin) - nil key-name key :single t) - (make-instance 'usab :vcui (ensure-integer vcui) - :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son - :sf sf :sver sver :vstart vstart :vend vend :imeta imeta - :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl) - :tfr (ensure-integer tfr) :cfr (ensure-integer cfr) - :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc - :curver curver :sabin sabin))) + vend imeta rmeta slc scc srl tfr cfr cxty + ttyl atnl lat cenc curver sabin) + nil key-name key :single t) + (make-instance 'usab :vcui (ensure-integer vcui) + :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son + :sf sf :sver sver :vstart vstart :vend vend :imeta imeta + :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl) + :tfr (ensure-integer tfr) :cfr (ensure-integer cfr) + :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc + :curver curver :sabin sabin))) (defun find-usab-rsab (rsab) "Find usab for rsab" @@ -557,71 +557,71 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (ensure-tui-integer tui) (collect-umlisp-query (mrsty (cui) srl tui tui :lrl klrl :order (cui asc)) (find-ucon-cui (ensure-integer cui) :srl srl))) - + (defun find-ucon-word (word &key (srl *current-srl*) (like nil)) "Return list of ucons that match word. Optionally, use SQL's LIKE syntax" (collect-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t - :lrl 'klrl :order '(cui asc)) + :lrl 'klrl :order '(cui asc)) (find-ucon-cui cui :srl srl))) (defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil)) "Return list of ucons that match word, optionally use SQL's LIKE syntax" (collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t - :lrl 'klrl :order '(cui asc)) + :lrl 'klrl :order '(cui asc)) (find-ucon-cui cui :srl srl))) (defun find-cui-normalized-word (word &key (srl *current-srl*) (like nil)) "Return list of cui that match word, optionally use SQL's LIKE syntax" (collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t - :lrl 'klrl :order '(cui asc)) - cui)) + :lrl 'klrl :order '(cui asc)) + cui)) (defun find-lui-normalized-word (word &key (srl *current-srl*) (like nil)) "Return list of cui that match word, optionally use SQL's LIKE syntax" (collect-umlisp-query-eval ('mrxnw_eng '(lui) srl 'nwd word :like like :distinct t - :lrl 'klrl :order '(cui asc)) - lui)) + :lrl 'klrl :order '(cui asc)) + lui)) (defun find-sui-normalized-word (word &key (srl *current-srl*) (like nil)) "Return list of cui that match word, optionally use SQL's LIKE syntax" (collect-umlisp-query-eval ('mrxnw_eng '(sui) srl 'nwd word :like like :distinct t - :lrl 'klrl :order '(cui asc)) - sui)) + :lrl 'klrl :order '(cui asc)) + sui)) (defun find-ustr-word (word &key (srl *current-srl*)) "Return list of ustrs that match word" (collect-umlisp-query (mrxw_eng (cui sui) srl wd word :lrl klrl - :order (cui asc sui asc)) + :order (cui asc sui asc)) (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl))) (defun find-ustr-normalized-word (word &key (srl *current-srl*)) "Return list of ustrs that match word" (collect-umlisp-query (mrxnw_eng (cui sui) srl nwd word :lrl klrl - :order (cui asc sui asc)) + :order (cui asc sui asc)) (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl))) (defun find-uterm-word (word &key (srl *current-srl*)) "Return list of uterms that match word" (collect-umlisp-query (mrxw_eng (cui lui) srl wd word :lrl klrl - :order (cui asc lui asc)) + :order (cui asc lui asc)) (find-uterm-cuilui (ensure-integer cui) (ensure-integer lui) :srl srl))) (defun find-uterm-normalized-word (word &key (srl *current-srl*)) "Return list of uterms that match word" (collect-umlisp-query (mrxnw_eng (cui lui) srl nwd word :lrl klrl - :order (cui asc lui asc)) + :order (cui asc lui asc)) (find-uterm-cuilui (ensure-integer cui) (ensure-integer lui) :srl srl))) (defun find-ucon-noneng-word (word &key (srl *current-srl*) (like nil)) "Return list of ucons that match non-english word" (collect-umlisp-query-eval ('mrxw_noneng '(cui) srl 'wd word :like like - :distinct t :lrl 'klrl :order '(cui asc)) + :distinct t :lrl 'klrl :order '(cui asc)) (find-ucon-cui cui :srl srl))) (defun find-ustr-noneng-word (word &key (srl *current-srl*)) "Return list of ustrs that match non-english word" (collect-umlisp-query (mrxw_noneng (cui sui) srl wd word :lrl klrl - :order (cui asc sui asc)) + :order (cui asc sui asc)) (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl))) ;; Special tables @@ -633,34 +633,34 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" ;;; Multiword lookup and score functions (defun find-uobj-multiword (str obj-lookup-fun sort-fun key srl - only-exact-if-match) + only-exact-if-match) (let ((uobjs '())) (dolist (word (delimited-string-to-list str #\space)) (setq uobjs (append uobjs (funcall obj-lookup-fun word :srl srl)))) - (let ((sorted - (funcall sort-fun str - (delete-duplicates uobjs :test #'= :key key)))) + (let ((sorted + (funcall sort-fun str + (delete-duplicates uobjs :test #'= :key key)))) (if (and (plusp (length sorted)) - only-exact-if-match - (multiword-match str (pfstr (first sorted)))) - (first sorted) - sorted)))) - + only-exact-if-match + (multiword-match str (pfstr (first sorted)))) + (first sorted) + sorted)))) + (defun find-ucon-multiword (str &key (srl *current-srl*) - (only-exact-if-match t)) + (only-exact-if-match t)) (find-uobj-multiword str #'find-ucon-word #'sort-score-pfstr-str - #'cui srl only-exact-if-match)) + #'cui srl only-exact-if-match)) (defun find-uterm-multiword (str &key (srl *current-srl*) - (only-exact-if-match t)) + (only-exact-if-match t)) (find-uobj-multiword str #'find-uterm-word #'sort-score-pfstr-str - #'lui srl only-exact-if-match)) + #'lui srl only-exact-if-match)) (defun find-ustr-multiword (str &key (srl *current-srl*) - (only-exact-if-match t)) + (only-exact-if-match t)) (find-uobj-multiword str #'find-ustr-word #'sort-score-ustr-str - #'sui srl only-exact-if-match)) - + #'sui srl only-exact-if-match)) + (defun sort-score-pfstr-str (str uobjs) "Return list of sorted and scored ucons. Score by match of str to ucon-pfstr" (sort-score-umlsclass-str uobjs str #'pfstr)) @@ -673,7 +673,7 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" "Sort a list of objects based on scoring to a string" (let ((scored '())) (dolist (obj objs) - (push (list obj (score-multiword-match str (funcall lookup-func obj))) + (push (list obj (score-multiword-match str (funcall lookup-func obj))) scored)) (mapcar #'car (sort scored #'> :key #'cadr)))) @@ -688,26 +688,26 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-lexterm-word (wrd) (collect-umlisp-query (lrwd (eui) nil wrd wrd) (make-instance 'lexterm :eui (ensure-integer eui) - :wrd (copy-seq wrd)))) + :wrd (copy-seq wrd)))) ;; LEX SQL Read functions (defun find-labr-eui (eui) (ensure-eui-integer eui) - (collect-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui) + (collect-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui) (make-instance 'labr :eui eui :bas bas :abr abr :bas2 bas2 - :eui2 (ensure-integer eui2)))) + :eui2 (ensure-integer eui2)))) (defun find-labr-bas (bas) (collect-umlisp-query (labr (eui abr eui2 bas2) nil bas bas) (make-instance 'labr :eui (ensure-integer eui) :abr abr :bas2 bas2 - :bas (copy-seq bas) :eui2 (ensure-integer eui2)))) + :bas (copy-seq bas) :eui2 (ensure-integer eui2)))) (defun find-lagr-eui (eui) (ensure-eui-integer eui) (collect-umlisp-query (lragr (str sca agr cit bas) nil eui eui) (make-instance 'lagr :eui eui :str str :sca sca :agr agr - :cit cit :bas bas))) + :cit cit :bas bas))) (defun find-lcmp-eui (eui) (ensure-eui-integer eui) @@ -723,13 +723,13 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (ensure-eui-integer eui) (collect-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui) (make-instance 'lnom :eui eui :bas bas :sca sca :bas2 bas2 :sca2 sca2 - :eui2 (ensure-integer eui2)))) + :eui2 (ensure-integer eui2)))) (defun find-lprn-eui (eui) (ensure-eui-integer eui) (collect-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui) (make-instance 'lprn :eui eui :bas bas :num num :gnd gnd - :cas cas :pos pos :qnt qnt :fea fea))) + :cas cas :pos pos :qnt qnt :fea fea))) (defun find-lprp-eui (eui) (ensure-eui-integer eui) @@ -743,7 +743,7 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-ltrm-eui (eui) (ensure-eui-integer eui) - (collect-umlisp-query (lrtrm (bas gen) nil eui eui) + (collect-umlisp-query (lrtrm (bas gen) nil eui eui) (make-instance 'ltrm :eui eui :bas bas :gen gen))) (defun find-ltyp-eui (eui) @@ -753,26 +753,26 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-lwd-wrd (wrd) (make-instance 'lwd :wrd wrd - :euilist (collect-umlisp-query (lrwd (eui) nil wrd wrd) - (ensure-integer eui)))) + :euilist (collect-umlisp-query (lrwd (eui) nil wrd wrd) + (ensure-integer eui)))) ;;; Semantic Network SQL access functions (defun find-sdef-ui (ui) (collect-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin) - nil ui ui :single t) + nil ui ui :single t) (make-instance 'sdef :rt rt :ui ui :styrl sty_rl :stnrtn stn_rtn - :def def :ex ex :un un :rh rh :abr abr :rin rin))) + :def def :ex ex :un un :rh rh :abr abr :rin rin))) (defun find-sstre1-ui (ui) (collect-umlisp-query (srstre1 (ui2 ui3) nil ui ui) (make-instance 'sstre1 :ui ui :ui2 (ensure-integer ui2) - :ui3 (ensure-integer ui3)))) + :ui3 (ensure-integer ui3)))) (defun find-sstre1-ui2 (ui2) (collect-umlisp-query (srstre1 (ui ui3) nil ui2 ui2) (make-instance 'sstre1 :ui (ensure-integer ui) :ui2 ui2 - :ui3 (ensure-integer ui3)))) + :ui3 (ensure-integer ui3)))) (defun find-sstr-rl (rl) (collect-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl) @@ -796,7 +796,7 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (with-sql-connection (conn) (ignore-errors (sql-execute "drop table USTATS" conn)) (sql-execute "create table USTATS (NAME varchar(160), COUNT bigint, SRL integer)" conn) - + (dotimes (srl 4) (insert-ustats-count conn "Concept Count" "MRCON" "distinct CUI" "KCUILRL" srl) (insert-ustats-count conn "Term Count" "MRCON" "distinct KCUILUI" "KCUILRL" srl) @@ -829,40 +829,40 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-count-table (conn table srl count-variable srl-control) (cond ((stringp srl-control) - (ensure-integer - (caar (sql-query (format nil "select count(~a) from ~a where ~a <= ~d" - count-variable table srl-control srl) - conn)))) + (ensure-integer + (caar (sql-query (format nil "select count(~a) from ~a where ~a <= ~d" + count-variable table srl-control srl) + conn)))) ((null srl-control) (ensure-integer - (caar (sql-query (format nil "select count(~a) from ~a" - count-variable table ) - conn)))) + (caar (sql-query (format nil "select count(~a) from ~a" + count-variable table ) + conn)))) (t (error "Unknown srl-control") 0))) (defun insert-ustats (conn name count srl) - (sql-execute (format nil "insert into USTATS (name,count,srl) values ('~a',~d,~d)" - name count (if srl srl 3)) - conn)) + (sql-execute (format nil "insert into USTATS (name,count,srl) values ('~a',~d,~d)" + name count (if srl srl 3)) + conn)) (defun find-ustats-all (&key (srl *current-srl*)) (if srl (collect-umlisp-query (ustats (name count srl) nil srl srl - :order (name asc)) - (make-instance 'ustats :name name - :hits (ensure-integer count) - :srl (ensure-integer srl))) + :order (name asc)) + (make-instance 'ustats :name name + :hits (ensure-integer count) + :srl (ensure-integer srl))) (collect-umlisp-query (ustats (name count srl) nil nil nil - :order (name asc)) - (make-instance 'ustats :name name - :hits (ensure-integer count) - :srl (ensure-integer srl))))) - + :order (name asc)) + (make-instance 'ustats :name name + :hits (ensure-integer count) + :srl (ensure-integer srl))))) + (defun find-ustats-srl (srl) (collect-umlisp-query (ustats (name count) nil srl srl :order (name asc)) - (make-instance 'ustats :name name :hits (ensure-integer count)))) + (make-instance 'ustats :name name :hits (ensure-integer count)))) @@ -885,4 +885,4 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-brel-rel (rel) (collect-umlisp-query (bonus_rel (sab sl rel rela count) nil rel rel) (make-instance 'brel :sab sab :sl sl :rel rel :rela rela - :hits (ensure-integer count)))) + :hits (ensure-integer count))))