X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=create-sql.lisp;h=4a4413a1aa2e93e7f1f4431c7fb6ed66fedbfcf2;hb=f4ea91e2cf0eb22db02498e54d1f75ef5dcd4239;hp=f2762861637a5422dc055db70f43fecc5bbaf844;hpb=6ebaa3627ee89b8f7f429ebcd01c4dc8d9892e0b;p=umlisp.git

diff --git a/create-sql.lisp b/create-sql.lisp
index f276286..4a4413a 100644
--- a/create-sql.lisp
+++ b/create-sql.lisp
@@ -169,6 +169,8 @@
 	     (:oracle "NUMBER(2,0)")
 	     (t "INTEGER")))
    :database conn)
+  ;; KCON deprecated by KPFENG field in MRCONSO
+  #+nil
   (dolist (tuple (query "select distinct cui from MRCONSO order by cui"
 			:database conn))
     (let ((cui (car tuple)))
@@ -240,7 +242,7 @@
     (sql-create-indexes conn +custom-index-cols+)
     (sql-create-special-tables conn)))
 
-(defun create-umls-db (&key (extension ".trans") (skip-translation nil))
+(defun create-umls-db (&key (extension "-trans") (skip-translation nil))
   "SQL Databases: initializes entire database via SQL copy commands.
 This is much faster that using create-umls-db-insert."
   (ensure-ucols+ufiles)
@@ -262,7 +264,7 @@ This is much faster that using create-umls-db-insert."
       (sql-create-indexes conn +custom-index-cols+)
       (sql-create-special-tables conn))))
 
-(defun translate-all-files (&optional (extension ".trans"))
+(defun translate-all-files (&optional (extension "-trans"))
   "Copy translated files and return postgresql copy commands to import"
   (make-noneng-index-file extension)
   (dolist (f (remove "MRXW_NONENG.RRF" *umls-files* :test #'string= :key #'fil))
@@ -345,13 +347,13 @@ This is much faster that using create-umls-db-insert."
    nil "COPY ~a FROM '~a' using delimiters '|' with null as ''"
    (table file) (ufile-pathname file extension)))
 
-(defun mysql-copy-cmd (file extension &key local-file)
+(defun mysql-copy-cmd (file extension &key (local-file t))
   "Return mysql copy statement for a file"
   (format
    nil
    "LOAD DATA ~AINFILE \"~a\" INTO TABLE ~a FIELDS TERMINATED BY \"|\""
    (if local-file "LOCAL " "")
-   (ufile-pathname file extension) (table file)))
+   (namestring (ufile-pathname file extension)) (table file)))
 
 
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