X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=data-structures.lisp;h=c7e3f683f8a30b0fa939923317f0e9fa659b17e1;hb=c01a3503e58ba9d4e7fadb42f3f0f69c38496e10;hp=c06b2ca0ac042d5296e5b4d08755be9e045437ae;hpb=ebbaacd0a589db2c590846742da33e3b4bf25d02;p=umlisp.git

diff --git a/data-structures.lisp b/data-structures.lisp
index c06b2ca..c7e3f68 100644
--- a/data-structures.lisp
+++ b/data-structures.lisp
@@ -2,15 +2,15 @@
 ;;;; *************************************************************************
 ;;;; FILE IDENTIFICATION
 ;;;;
-;;;; Name:          data-structures.lisp
-;;;; Purpose:       Basic data objects for UMLisp
-;;;; Author:        Kevin M. Rosenberg
-;;;; Date Started:  Apr 2000
+;;;; Name:    data-structures.lisp
+;;;; Purpose:  Basic data objects for UMLisp
+;;;; Author:   Kevin M. Rosenberg
+;;;; Created:  Apr 2000
 ;;;;
-;;;; $Id: data-structures.lisp,v 1.8 2003/05/06 07:17:35 kevin Exp $
+;;;; $Id$
 ;;;;
 ;;;; This file, part of UMLisp, is
-;;;;    Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
+;;;;    Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
 ;;;;
 ;;;; UMLisp users are granted the rights to distribute and use this software
 ;;;; as governed by the terms of the GNU General Public License.
@@ -18,46 +18,62 @@
 
 (in-package #:umlisp)
 
-(eval-when (:compile-toplevel)
-  (declaim (optimize (speed 3) (safety 1) (compilation-speed 0) (debug 3))))
-
 ;;; Paths for files
 
-(defvar *umls-path*
-  (make-pathname :directory '(:absolute "data" "umls" "2003AA"))
+(defparameter *release* "2006AD")
+
+(defparameter *umls-path*
+  (make-pathname :directory (list :absolute "srv" "umls" *release*))
   "Path for base of UMLS data files")
 
-(defvar *meta-path* 
-    (merge-pathnames 
-     (make-pathname :directory '(:relative "META"))
-     *umls-path*))
+(defparameter *meta-dir*
+  (make-pathname :directory '(:relative "META")))
+
+(defparameter *lex-dir*
+  (make-pathname :directory '(:relative "LEX")))
+
+(defparameter *net-dir*
+  (make-pathname :directory '(:relative "NET")))
 
-(defvar *lex-path* 
-    (merge-pathnames 
-     (make-pathname :directory '(:relative "LEX"))
-     *umls-path*))
+(defparameter *meta-path*
+  (merge-pathnames *meta-dir* *umls-path*))
 
-(defvar *net-path* 
-    (merge-pathnames 
-     (make-pathname :directory '(:relative "NET"))
-     *umls-path*))
+(defparameter *lex-path*
+  (merge-pathnames *lex-dir* *umls-path*))
+
+(defparameter *net-path*
+  (merge-pathnames *net-dir* *umls-path*))
 
 (defun umls-path! (p)
-  (setq *umls-path* p))
+  (setq *umls-path* (etypecase p
+                      (string (parse-namestring p))
+                      (pathname p)))
+  (setq *meta-path* (merge-pathnames *meta-dir* *umls-path*))
+  (setq *lex-path* (merge-pathnames *lex-dir* *umls-path*))
+  (setq *net-path* (merge-pathnames *net-dir* *umls-path*)))
 
 
 ;;; Structures for parsing UMLS text files
- 
-(defparameter *umls-files* nil 
+
+(defparameter *umls-files* nil
   "List of umls file structures. Used when parsing text files.")
-(defparameter *umls-cols* nil 
+(defparameter *umls-cols* nil
   "List of meta column structures. Used when parsing text files.")
 
 
+;; Special variables
+
+(defvar *has-fixnum-class* (when (ignore-errors (find-class 'fixnum)) t))
+
+(defvar *octet-sql-storage* t
+  "Used to deciding field lengths. Use nil if using UTF-8 database encoding. But, UTF-8 will cause MySQL to double the bytes used for fixed field sizes.")
+
 ;; Preliminary objects to replace structures
 
 (defclass ufile ()
-  ((fil :initarg :fil :accessor fil)
+  ((subdir :initarg :subdir :accessor subdir)
+   (dir :initarg :dir :accessor dir)
+   (fil :initarg :fil :accessor fil)
    (table :initarg :table :accessor table)
    (des :initarg :des :accessor des)
    (fmt :initarg :fmt :accessor fmt)
@@ -67,7 +83,7 @@
    (fields :initarg :fields :accessor fields)
    (ucols :initarg :ucols :accessor ucols))
   (:default-initargs :fil nil :table nil :des nil :fmt nil :cls nil :rws nil :bts nil
-		     :fields nil :ucols nil)
+		     :fields nil :ucols nil :subdir nil :dir nil)
   (:documentation "UMLS File"))
 
 (defclass ucol ()
@@ -81,7 +97,7 @@
    (sqltype :initarg :sqltype :accessor sqltype)
    (dty :initarg :dty :accessor dty :documentation "new in 2002: suggested SQL datatype")
    (parse-fun :initarg :parse-fun :accessor parse-fun)
-   (quotechar :initarg :quotechar :accessor quotechar)
+   (quote-str :initarg :quote-str :accessor quote-str)
    (datatype :initarg :datatype :accessor datatype)
    (custom-value-fun :initarg :custom-value-fun :accessor custom-value-fun))
   (:default-initargs :col nil :des nil :ref nil :min nil :av nil :max nil :fil nil
@@ -89,3 +105,13 @@
 		     :custom-value-fun nil)
   (:documentation "UMLS column"))
 
+
+(defmethod print-object ((obj ufile) (s stream))
+  (print-unreadable-object (obj s :type t)
+    (format s "~A" (fil obj))))
+
+(defmethod print-object ((obj ucol) (s stream))
+  (print-unreadable-object (obj s :type t)
+    (format s "~A" (col obj))))
+
+