X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=doc%2Ftex2rtf%2Fctsim.tex;h=6b42f8d311535b2e0ee71be973c78f200bfe347e;hb=3df2d0b46d75b796f2d0aeabdd78d60932d884ef;hp=bda68add4cf7f23b94f18d75ef755520966da7b9;hpb=252109bcbb76e8ba9d42687e8336ba17125b385e;p=ctsim.git

diff --git a/doc/tex2rtf/ctsim.tex b/doc/tex2rtf/ctsim.tex
index bda68ad..6b42f8d 100644
--- a/doc/tex2rtf/ctsim.tex
+++ b/doc/tex2rtf/ctsim.tex
@@ -79,300 +79,13 @@ The \ctsim package has two executable files: the graphical \helprefn{ctsim}{ctsi
 
 \include{ctsim-concepts}
 
-\chapter{Installation}\index{Installation}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
-
-\section{Download}\label{download}\index{Installation,Download}%
-
-The latest version of CTSim, plus source code, can be accessed from:
-
-\begin{verbatim}
-http://www.ctsim.org
-ftp://ftp.ctsim.org
-\end{verbatim}
-
-It is available in Windows 95/NT/2000 and Linux GUI versions and non-GUI versions.
-
-\section{Installing Linux RPM}\index{Installation,Linux}%
-
-\section{Installing Windows Binary}\index{Installation,Windows}%
-
-\section{Build From Sources}\label{build}\index{Installation,Build}%
-
-See the INSTALL file included in the source distribution for instructions.
-
-\section{Web Requirements}\label{installreq}\index{Installation,Requirements}%
-  \begin{itemize}\itemsep=0pt
-  \item zlib Library (optional)
-        \par Used for PNG file export.
-
-  \item libpng Library (optional)
-        \par Used for PNG file export.
-	\par www.libpng.org
-
-  \item FFTW library (optional)
-	\par Used for frequency-based filtering and fourier transformations of images.
-	\par www.fftw.org
-
-  \item readline library (optional)
-	\par Used for \ctsimtext interactive shell.
-
-  \item dmalloc library (optional)
-	\par Used for debugging memory allocation
-	\par www.dmalloc.com
-
-  \item wxWindows library (optional) 
-  \par Used for platform-independent graphical interface. The graphical-shell
-  program \ctsim requires this library.  
-  \par www.wxwindows.org
-\end{itemize}
-
-\chapter{ctsim - the Graphical User Interface}\label{ctsim}\index{ctsim}% 
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
-
-\ctsim is the graphical shell for the CTSim project. It is
-written using the wxLibrary for cross-platform compatibility with GTK,
-Motif, and Microsoft Windows. It includes all of the functionality of
-the command-line tool {\tt ctsimtext} as well as image processing and visualization features.
-
-\ctsim can open projection files, image files, phantom definition files, and plotfiles.
-
-\usage
-ctsim [OPTIONS] [files to open...]
-
-\chapter{ctsimtext}\label{ctsimtext}\index{ctsimtext}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
-
-\ctsimtext is a master shell for all of the command-line utilities. 
-
-\usage
-\ctsimtext can be executed without any parameters. In that case, \ctsimtext
-offers a command-line to enter the function-names and their parameters. The output of the command is displayed. Further commands may be given to \ctsimtext. The shell is exited by the {\tt quit} command.
-
-\ctsimtext can also be called to execute a single command. This is especially useful for batch files containing multiple \ctsimtext commands. This is invoked by calling \par
-{\tt ctsimtext function-name parameters...}.
-
-The available functions are:
-
-\section{if1}\label{if1}\index{ctsimtext,if1}%
-Perfoms math functions on a single image.
-
-\usage
-\begin{itemize}\itemsep=0pt
-  \item --invert
-  \item --log
-  \item --exp
-  \item --sqr
-  \item --sqrt
-\end{itemize}
-
-\section{if2}\label{if2}\index{ctsimtext,if2}%
-Perfoms math functions on a two images.
-
-\usage
-\begin{itemize}\itemsep=0pt
-  \item --add
-  \item --sub
-  \item --mul
-  \item --comp
-  \item --column-plot
-  \item --row-plot
-\end{itemize}
-
-\section{ifexport}\label{ifexport}\index{ctsimtext,ifexport}%
-Export an imagefile to a standard graphics file.
-
-\usage
-\begin{itemize}\itemsep=0pt
-  \item --format
-  \begin{itemize}\itemsep=0pt
-    \item --pgm
-    \item --pgmasc
-    \item --png
-    \item --png16
-  \end{itemize}
-  \item --center
-  \begin{itemize}\itemsep=0pt
-    \item median
-    \item mode
-    \item mean
-  \end{itemize}
-  \item --auto
-  \begin{itemize}\itemsep=0pt
-     \item --full
-     \item --std0.1
-     \item --std0.5
-     \item --std1
-     \item --std2
-     \item --std3
-  \end{itemize}
-  \item --scale
-  \item --min
-  \item --max
-\end{itemize}
-
-\section{ifinfo}\label{ifinfo}\index{ctsimtext,ifinfo}%
-
-Displays information about an imagefile.
-
-\usage
-\begin{itemize}\itemsep=0pt
-  \item --labels
-  \item --no-labels
-  \item --stats
-  \item --no-stats
-  \item --help
-\end{itemize}
-
-\section{phm2pj}\label{phm2pj}\index{ctsimtext,phm2pj}%
-Simulates collection of X-rays data (projections) around a phantom object.
-
-\usage
-phm2pj projection-file-name number-of-detectors number-of-views [options...]
-\begin{itemize}\itemsep=0pt
-  \item --phantom
-  Select a standard phantom 
-  \begin{itemize}\itemsep=0pt
-    \item herman
-    \item herman-b
-    \item shepp-logan
-    \item shepp-logan-b
-  \end{itemize}
-
-  \item --phmfile
-  Load a phantom definition definition
-
-  \item --geometry
-  \begin{itemize}\itemsep=0pt
-    \item parallel
-    \item equiangular
-    \item equilinear
-  \end{itemize}
-
-  \item --nray
-    Number of samples per each detector
-
-  \item --rotangle
-    Sets the rotation amount as a multiple of pi. For parallel geometries use
-a rotation angle of 1 and for equilinear and equiangular geometries use a rotation angle of 2.
-
-  \item --field-of-view
-    Sets the field of view as a ratio of the diameter of the phantom. For parallel geometries, using a value of 1.0 is fine. For other geometies, this should be at least 1.3 to avoid artifacts.
-
-  \item --focal-length
-    Sets the distance of the radiation source and detectors from the center of the object as a ratio of the radius of the object. For parallel geometries, a value of 1.0 is fine. For other geometries, this should be at least 2.0 to avoid artifacts.
-\end{itemize}
-
-The Herman phantom is taken with permission from Gabor Hermans 1980 book\cite{HERMAN80}. The Shepp-Logan phantom was published in 1974\cite{SHEPP74}.
-
-\section{phm2if}\label{phm2if}\index{ctsimtext,phm2if}%
-Converts a geometric phantom object into an imagefile. The size of the
-imagefile in pixels must be specified as well as the number of samples
-to average per pixel.
-
-\usage
-\begin{itemize}\itemsep=0pt
-  \item --nsamples
-\end{itemize}
-
-\section{pj2if}\label{pj2if}\index{ctsimtext,pj2if}%
-Convert a projection file into an imagefile.
-
-\usage
-\begin{itemize}\itemsep=0pt
-\item --help    Print brief online help
-\end{itemize}
-
-\section{pjinfo}\label{pjinfo}\index{ctsimtext,pjinfo}%
-Displays information about a projection file.
-
-\usage
-\begin{itemize}\itemsep=0pt
-  \item --binaryheader
-  \item --binaryview
-  \item --startview
-  \item --endview
-  \item --dump
-\end{itemize}
-
-\section{pjrec}\label{pjrec}\index{ctsimtext,pjrec}%
-Reconstructs the interior of an object from a projection file.
-
-\usage
-\begin{twocollist}
-\twocolitemruled{{\bf Parameter}}{{\bf Options}}
-\twocolitem{{\bf --filter}}
-{Selects which filter to apply to each projection. To properly reconstruct an image, this filter should be multiplied 
-by the absolute value of distance from zero frequency.
-\begin{itemize}\itemsep=0pt
-\item abs\_bandlimit
-\item abs\_cosine
-\item abs\_hamming
-\end{itemize}
-}
-\twocolitem{{\bf --filter-parameter}}{Sets the alpha level for Hamming
-  window. At setting of 0.54, this equals the Hanning window.}
-
-\twocolitem{{\bf --filter-method}}{Selects the filtering method. For large numbers of detectors, {\tt rfftw} is optimal. For smaller numbers of detectors, {\tt convolution} might be a bit faster. 
-\begin{itemize}\itemsep=0pt
-\item convolution
-\item fourier
-\item fourier\_table
-\item fftw
-\item rfftw
-\end{itemize}
-}
-
-\twocolitem{{\bf --filter-generation}}{Selects the filter generation. With convolution, {\tt direct} is the proper method to select. With any of the frequency methods, {\tt inverse-fourier} is the best method.
-\begin{itemize}\itemsep=0pt
-\item direct
-\item inverse-fourier
-\end{itemize}
-}
-\twocolitem{{\bf --interpolation}}{Interpolation technique. {\tt linear} is optimal.
-\begin{itemize}\itemsep=0pt
-\item nearest
-\item linear
-\end{itemize}
-}    
-  \twocolitem{{\bf -backprojection}}{Selects the backprojection technique. A setting of {\tt idiff3} is optimal.
-\begin{itemize}\itemsep=0pt
-\item trig
-\item table
-\item diff
-\item diff2
-\item idiff2
-\item idiff3
-\end{itemize}
-}
-\twocolitem{{\bf --zeropad}}{ Zeropad factor. A setting of {\tt 1} is optimal.}
-
-\twocolitem{{\bf --preinterpolate}}{Selects preinterpolation interpolation technique and sets the preinterpolation factor. Currently, this is experimental and does not work well.}
-\end{twocollist}
-
-\chapter{The Web Browser CGI Interface}\label{webinterface}\index{Web Interface}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
-
-\section{Overview}\index{Web Interface,Overview}%
-The CGI program {\tt ctsim.cgi} takes projections of a standard
-phantom object, performs reconstruction, and then compares the
-rasterized phantom object with the reconstruction. The comparison is
-performed both visually by an image subtraction as well as by standard
-statistics as described by Herman\cite{HERMAN80}.
+\include{ctsim-install}
 
-\section{Requirements}\index{Web Interface,Requirements}%
-   \begin{itemize}\itemsep=0pt
-      \item Apache or other CGI compatible web server
+\include{ctsim-gui}
 
-      \item Perl (version 4.0 or higher)
+\include{ctsim-textui}
 
-      \item A client web browser than can display PNG files. Most
-      current web browsers support PNG.
-  \end{itemize}
+\include{ctsim-web}
 
 \newpage