X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=parse-macros.lisp;h=67af3c6ddd2f51806a86f035898fba5b144a6ce7;hb=90dcc29376b4e52a1ba4b7b86dd19ce9f81be4c5;hp=f3a8408719a4a0f5714a4ce294ed2beb740f13a2;hpb=0ececd07987c48de78c14a60136014a2df7b280b;p=umlisp.git diff --git a/parse-macros.lisp b/parse-macros.lisp index f3a8408..67af3c6 100644 --- a/parse-macros.lisp +++ b/parse-macros.lisp @@ -1,44 +1,102 @@ -;;; UMLS-Parse General -;;; General purpose Lisp Routines for parsing UMLS files -;;; and inserting into SQL databases -;;; -;;; Copyright (c) 2001 Kevin M. Rosenberg, M.D. -;;; $Id: parse-macros.lisp,v 1.1 2002/10/05 20:17:14 kevin Exp $ - -(in-package :umlisp) - - -(defmacro with-umls-file ((line filename) &body body) -"Opens a UMLS and processes each parsed line with (body) argument" - (let ((ustream (gensym))) - `(with-open-file - (,ustream (umls-pathname ,filename) - :direction :input :if-exists :overwrite) - (do ((,line (read-umls-line ,ustream) (read-umls-line ,ustream))) - ((eq ,line 'eof) t) - ,@body)))) +;;;; -*- Mode: Lisp; Syntax: ANSI-Common-Lisp; Base: 10; Package: umlisp -*- +;;;; ************************************************************************* +;;;; FILE IDENTIFICATION +;;;; +;;;; Name: parse-macros.lisp +;;;; Purpose: Macros for UMLS file parsing +;;;; Author: Kevin M. Rosenberg +;;;; Created: Apr 2000 +;;;; +;;;; $Id$ +;;;; +;;;; This file, part of UMLisp, is +;;;; Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D. +;;;; +;;;; UMLisp users are granted the rights to distribute and use this software +;;;; as governed by the terms of the GNU General Public License. +;;;; ************************************************************************* + +(in-package #:umlisp) + +(defun read-umls-line (strm &optional (eof 'eof)) + "Read a line from a UMLS stream, split into fields" + (let ((line (read-line strm nil eof))) + (if (eq line eof) + eof + (delimited-string-to-list line #\| t)))) + +(defun source-files (path) + (if (probe-file path) + (list path) + (sort + (directory (make-pathname :defaults path + :type :wild + :name (concatenate 'string (pathname-name path) + (aif (pathname-type path) + (concatenate 'string "." it) + "")))) + #'(lambda (a b) + (string-lessp (pathname-type a) (pathname-type b)))))) + +(defmacro with-buffered-reading-umls-file ((line path) &body body) + "Opens a UMLS and processes each parsed line with (body) argument" + (let ((ustream (gensym "STRM-")) + (buffer (gensym "BUF-")) + (eof (gensym "EOF-")) + (files (gensym "FILES-"))) + `(let ((,eof (gensym "EOFSYM-")) + (,buffer (make-fields-buffer)) + (,files (source-files ,path))) + (with-open-file (,ustream (first ,files) :direction :input + #+(and clisp unicode) :external-format + #+(and clisp unicode) charset:utf-8) + (do ((,line (read-buffered-fields ,buffer ,ustream #\| ,eof) + (read-buffered-fields ,buffer ,ustream #\| ,eof))) + ((eq ,line ,eof) t) + (setq ,line (coerce ,line 'list)) + (print ,line) + ,@body))))) + +(defmacro with-reading-umls-file ((line path) &body body) + "Opens a UMLS and processes each parsed line with (body) argument" + (let ((ustream (gensym "STRM-")) + (eof (gensym "EOF-")) + (files (gensym "FILES-"))) + `(let ((,eof (gensym "EOFSYM-")) + (,files (source-files ,path))) + (unless ,files + (error "Can't find files for ~A~%" (namestring ,path))) + (with-open-file (,ustream (first ,files) :direction :input + #+(and clisp unicode) :external-format + #+(and clisp unicode) charset:utf-8) + (do ((,line (read-umls-line ,ustream ,eof) + (read-umls-line ,ustream ,eof))) + ((eq ,line ,eof) t) + (locally (declare (type list ,line)) + ,@body)))))) + +(defmacro with-umls-ufile ((line ufile) &body body) + "Opens a UMLS and processes each parsed line with (body) argument" + `(with-reading-umls-file (,line (ufile-pathname ,ufile)) + ,@body)) + +(defmacro with-umls-file ((line ufile) &body body) + "Opens a UMLS and processes each parsed line with (body) argument" + `(with-reading-umls-file (,line (umls-pathname ,ufile)) + ,@body)) (defmacro with-buffered-umls-file ((line filename) &body body) -"Opens a UMLS and processes each parsed line with (body) argument" - (let ((ustream (gensym)) - (buffer (gensym))) - `(let ((,buffer (make-fields-buffer))) - (with-open-file - (,ustream (umls-pathname ,filename) - :direction :input :if-exists :overwrite) - (do ((,line (read-buffered-fields ,buffer ,ustream) (read-buffered-fields ,buffer ,ustream))) - ((eq ,line 'eof) t) - ,@body))))) - -(defmacro with-buffered2-umls-file ((line filename) &body body) -"Opens a UMLS and processes each parsed line with (body) argument" - (let ((ustream (gensym)) - (buffer (gensym))) - `(let ((,buffer (make-fields-buffer2))) - (with-open-file - (,ustream (umls-pathname ,filename) - :direction :input :if-exists :overwrite) - (do ((,line (read-buffered-fields2 ,buffer ,ustream) (read-buffered-fields2 ,buffer ,ustream))) - ((eq ,line 'eof) t) - ,@body))))) + "Opens a UMLS and processes each parsed line with (body) argument" + (let ((ustream (gensym "STRM-")) + (buffer (gensym "BUF-")) + (eof (gensym "EOF-"))) + `(let ((,buffer (make-fields-buffer)) + (,eof (gensym "EOFSYM-"))) + (with-open-file + (,ustream (umls-pathname ,filename) :direction :input) + (do ((,line (read-buffered-fields ,buffer ,ustream #\| ,eof) + (read-buffered-fields ,buffer ,ustream #\| ,eof))) + ((eq ,line ,eof) t) + ,@body))))) +