X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=sql-classes.lisp;h=54519a02f44aca7943b91e76880378a164ad7ec6;hb=12131484e6e61019e61a281e26d49aaf7dd83690;hp=f6f306ecb204ce8162f92bcf39b9dad8d01a5d3c;hpb=357dad37300c0f2cc45156dae18bd89265c20431;p=umlisp.git diff --git a/sql-classes.lisp b/sql-classes.lisp index f6f306e..54519a0 100644 --- a/sql-classes.lisp +++ b/sql-classes.lisp @@ -224,25 +224,41 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (setq ,eui (parse-eui ,eui)) ,eui)) -(defun find-ucon-cui (cui &key (srl *current-srl*)) - "Find ucon for a cui" +(defun make-ucon-cui (cui) + (ensure-cui-integer cui) + (when cui + (make-instance 'ucon :cui cui))) + +(defun find-ucon-cui (cui &key (srl *current-srl*) without-pfstr) + "Find ucon for a cui. If set SAB, the without-pfstr is on by default" (ensure-cui-integer cui) (unless cui (return-from find-ucon-cui nil)) - (or - (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t :filter "KPFENG=1") - (make-instance 'ucon :cui cui :pfstr str - :lrl kcuilrl)) - (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t) - (make-instance 'ucon :cui cui :pfstr str - :lrl kcuilrl)))) - -(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*)) - "Find ucon for a cui" + (if without-pfstr + (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t) + (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl) + :pfstr nil))) + (or + (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t :filter "KPFENG=1") + (make-instance 'ucon :cui cui :pfstr str + :lrl kcuilrl)) + (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t) + (make-instance 'ucon :cui cui :pfstr str + :lrl kcuilrl)))) + +(defun find-uconso-cui (cui &key (srl *current-srl*)) + "Find ucon for a cui. If set SAB, the without-pfstr is on by default" (ensure-cui-integer cui) - (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t) - (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl) - :pfstr nil))) + (unless cui (return-from find-uconso-cui nil)) + + (collect-umlisp-query (mrconso (lat ts lui stt sui ispref aui saui scui sdui sab tty code str + srl suppress cvf kpfeng kcuisui kcuilui kcuilrl + kluilrl ksuilrl) srl cui cui) + (make-instance 'uconso :cui cui :lat lat :ts ts :lui lui :stt stt :sui sui :ispref ispref + :aui aui :saui saui :scui scui :sdui sdui :sab sab :tty tty :code code + :str str :srl srl :suppress suppress :cvf cvf :kpfeng kpfeng + :kcuisui kcuisui :kcuilui kcuilui :kcuilrl kcuilrl :kluilrl kluilrl + :ksuilrl ksuilrl))) (defun find-pfstr-cui (cui &key (srl *current-srl*)) "Find preferred string for a cui" @@ -253,7 +269,13 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" str) (collect-umlisp-query (mrconso (str) srl cui cui :distinct t :single t) - str))) + str))) + +(defun find-lrl-cui (cui &key (srl *current-srl*)) + "Find LRL for a cui" + (ensure-cui-integer cui) + (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :distinct t :single t) + (ensure-integer kcuilrl))) (defun find-ucon-lui (lui &key (srl *current-srl*)) "Find list of ucon for lui" @@ -380,15 +402,19 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" :distinct t) (make-instance 'usty :tui (ensure-integer tui) :sty sty))) -(defun find-urel-cui (cui &key (srl *current-srl*)) +(defun find-urel-cui (cui &key (srl *current-srl*) filter without-pfstr2) "Return a list of urel for cui" (ensure-cui-integer cui) (collect-umlisp-query (mrrel (aui1 rel stype1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf) - srl cui1 cui :lrl "KSRL") - (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel - :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2 - :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir - :suppress suppress :cvf cvf :pfstr2 (find-pfstr-cui cui2)))) + srl cui1 cui :lrl "KSRL" :filter filter) + (let ((rel + (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel + :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2 + :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir + :suppress suppress :cvf cvf))) + (unless without-pfstr2 + (setf (slot-value rel 'pfstr2) (find-pfstr-cui cui2))) + rel))) (defun find-urel-rui (rui &key (srl *current-srl*)) "Return the urel for a rui" @@ -713,6 +739,43 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" :lrl 'klrl :order '(cui asc)) (find-ucon-cui cui :srl srl))) +(defun find-ucon-word-sab (word &key sab (srl *current-srl*) (like nil)) + "Return list of ustr that match word in matching SAB. Optionally, use SQL's LIKE syntax" + (let ((query (format nil "SELECT c.cui FROM MRCONSO c,MRXW_ENG x WHERE x.WD ~A '~A' AND x.cui=c.cui AND ~A ~A" + (if like "LIKE" "=") + (clsql-sys::sql-escape-quotes word) + (typecase sab + (stringp + (format nil " c.sab='" (clsql-sys::sql-escape-quotes sab))) + (cons + (format nil " c.sab IN (~('~A'~^,~))" + (mapcar 'clsql-sys::sql-escape-quotes sab))) + (t + (error "SAB missing"))) + (if srl (format nil "AND KCUILRL <= ~D" srl) "")))) + (loop for tuple in (mutex-sql-query query) + collect (make-instance 'ucon (first tuple))))) + +(defun find-ustr-word-sab (word &key sab (srl *current-srl*) (like nil)) + "Return list of ustr that match word in matching SAB. Optionally, use SQL's LIKE syntax" + (let ((query (format nil "SELECT c.sui,c.cui,c.lui,c.str,c.lrl,c.stt,c.suppress,c.cuisui FROM MRCONSO c,MRXW_ENG x WHERE x.WD ~A '~A' AND x.cui=c.cui AND x.lui=c.lui AND x.sui=c.sui AND ~A ~A" + (if like "LIKE" "=") + (clsql-sys::sql-escape-quotes word) + (typecase sab + (stringp + (format nil " c.sab='" (clsql-sys::sql-escape-quotes sab))) + (cons + (format nil " c.sab IN (~('~A'~^,~))" + (mapcar 'clsql-sys::sql-escape-quotes sab))) + (t + (error "SAB missing"))) + (if srl (format nil "AND KCUILRL <= ~D" srl) "")))) + (loop for tuple in (mutex-sql-query query) + collect (destructuring-bind (sui cui lui str lrl stt suppress cuisui) tuple + (make-instance 'ustr :sui sui :cui cui :lui lui :str str :lrl lrl + :stt stt :suppress suppress :cuisui cuisui))))) + + (defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil)) "Return list of ucons that match word, optionally use SQL's LIKE syntax" (collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t @@ -782,10 +845,10 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" ;;; Multiword lookup and score functions (defun find-uobj-multiword (str obj-lookup-fun sort-fun key srl - only-exact-if-match limit) + only-exact-if-match limit &key extra-lookup-args) (let ((uobjs '())) (dolist (word (delimited-string-to-list str #\space)) - (setq uobjs (append uobjs (funcall obj-lookup-fun word :srl srl)))) + (setq uobjs (append uobjs (apply obj-lookup-fun word :srl srl extra-lookup-args)))) (let ((sorted (funcall sort-fun str (delete-duplicates uobjs :test #'= :key key)))) @@ -804,9 +867,14 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-ucon-multiword (str &key (srl *current-srl*) (only-exact-if-match t) - limit) - (find-uobj-multiword str #'find-ucon-word #'sort-score-pfstr-str - #'cui srl only-exact-if-match limit)) + limit + sab) + (if sab + (find-uobj-multiword str #'find-ucon-word-sab #'sort-score-pfstr-str + #'cui srl only-exact-if-match limit + :extra-lookup-args (list :sab sab)) + (find-uobj-multiword str #'find-ucon-word #'sort-score-pfstr-str + #'cui srl only-exact-if-match limit))) (defun find-uterm-multiword (str &key (srl *current-srl*) (only-exact-if-match t) @@ -816,9 +884,14 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-ustr-multiword (str &key (srl *current-srl*) (only-exact-if-match t) - limit) - (find-uobj-multiword str #'find-ustr-word #'sort-score-ustr-str - #'sui srl only-exact-if-match limit)) + limit + sab) + (if sab + (find-uobj-multiword str #'find-ustr-word-sab #'sort-score-ustr-str + #'sui srl only-exact-if-match limit + :extra-lookup-args (list :sab sab)) + (find-uobj-multiword str #'find-ustr-word #'sort-score-ustr-str + #'sui srl only-exact-if-match limit))) (defun sort-score-pfstr-str (str uobjs) "Return list of sorted and scored ucons. Score by match of str to ucon-pfstr"