X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=sql-classes.lisp;h=6cd2c46e14613f5e0533c45e657f8bf7a02adc01;hb=78049d6d96e96b173ae8b2d1b2365b1f2ac1bf10;hp=5aae593acb5fe9ca821ed7564535f035dbe9a47d;hpb=bfdd5c9d3d66970759fcdbee5a51da2ca93ddf06;p=umlisp.git

diff --git a/sql-classes.lisp b/sql-classes.lisp
index 5aae593..6cd2c46 100644
--- a/sql-classes.lisp
+++ b/sql-classes.lisp
@@ -7,7 +7,7 @@
 ;;;; Programmer:    Kevin M. Rosenberg
 ;;;; Date Started:  Apr 2000
 ;;;;
-;;;; $Id: sql-classes.lisp,v 1.3 2002/10/09 23:03:41 kevin Exp $
+;;;; $Id: sql-classes.lisp,v 1.10 2002/11/12 18:05:00 kevin Exp $
 ;;;;
 ;;;; This file, part of UMLisp, is
 ;;;;    Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
@@ -69,10 +69,10 @@
 ;;; Lookup functions for uterms,ustr in ucons
 
 (defun find-uterm-in-ucon (ucon lui)
-  (find lui (s#term ucon) :key #'uterm-lui :test 'equal))
+  (find lui (s#term ucon) :key #'lui :test 'equal))
 
 (defun find-ustr-in-uterm (uterm sui)
-  (find sui (s#str uterm) :key #'ustr-sui :test 'equal))
+  (find sui (s#str uterm) :key #'sui :test 'equal))
 
 (defun find-ustr-in-ucon (ucon sui)
   (let ((found-ustr nil))
@@ -183,6 +183,22 @@
        ls
        :database db))))
 
+(defun map-ucon-all (fn &key (srl *current-srl*))
+  "Return list of all ucon's"
+  (let ((ls "select distinct CUI,KPFSTR,KCUILRL from MRCON"))
+    (when srl
+      (string-append ls (format nil " where KCUILRL <= ~d" srl)))
+    (string-append ls " order by CUI asc")
+    (with-sql-connection (db)
+      (clsql:map-query 
+       nil
+       #'(lambda (cui pfstr cuilrl)
+	   (funcall fn
+		    (make-instance 'ucon :cui (ensure-integer cui)
+				   :pfstr pfstr
+				   :lrl (ensure-integer cuilrl))))
+       ls
+       :database db))))
 
 
 (defun find-udef-cui (cui &key (srl *current-srl*))
@@ -255,7 +271,7 @@
 
 (defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*))
   (mapcar 
-   #'(lambda (cui) (find-ucon-cui cui :key srl))
+   #'(lambda (cui) (find-ucon-cui cui :srl srl))
    (remove-duplicates (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl)))))
 
 (defun find-ucoc-cui (cui &key (srl *current-srl*))
@@ -300,7 +316,7 @@
 (defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*))
   "List of ucon with co-occurance cui2"
   (mapcar 
-   #'(lambda (cui) (find-ucon-cui cui :key srl))
+   #'(lambda (cui) (find-ucon-cui cui :srl srl))
    (remove-duplicates (mapcar #'cui1 (find-ucoc-cui2 cui2 :srl srl)))))
 
 (defun find-ulo-cui (cui &key (srl *current-srl*))
@@ -319,6 +335,7 @@
 	    ulos))
     (nreverse ulos)))
 
+(defgeneric suistr (lo))
 (defmethod suistr ((lo ulo))
   "Return the string for a ulo object"
   (find-string-sui (sui lo)))
@@ -561,18 +578,46 @@
       (push (find-usty-tui (nth 0 tuple)) ustys))
     (nreverse ustys)))
 
-(defun find-usty_freq-all ()
-  (let ((usty_freqs '()))
-    (dolist (tuple (mutex-sql-query "select distinct TUI from MRSTY"))
-      (let* ((tui (car tuple))
-	     (freq (ensure-integer 
-		     (caar (mutex-sql-query 
-			    (format nil "select count(*) from MRSTY where TUI=~a" tui))))))
-	(push (make-instance 'usty_freq :usty (find-usty-tui tui) :freq freq) usty_freqs)))
-    (sort usty_freqs #'> :key #'usty_freq-freq)))
-	
-
-
+(defun find-usab-all ()
+  "Find usab for a key"
+  (let ((results '()))
+    (dolist (tuple (mutex-sql-query "select VCUI,RCUI,VSAB,RSAB,SON,SF,SVER,MSTART,MEND,IMETA,RMETA,SLC,SCC,SRL,TFR,CFR,CXTY,TTYL,ATNL,LAT,CENC,CURVER,SABIN from MRSAB"))
+      (destructuring-bind
+	    (vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) tuple
+	(push 
+	 (make-instance 'usab :vcui (ensure-integer vcui) 
+			:rcui (ensure-integer rcui)
+			:vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart
+			:mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc
+			:srl (ensure-integer srl) 
+			:tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
+			:cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
+			:curver curver :sabin sabin)
+	 results)))
+    (nreverse results)))
+
+(defun find-usab-by-key (key-name key)
+  "Find usab for a key"
+  (aif (car (mutex-sql-query 
+	     (format nil "select VCUI,RCUI,VSAB,RSAB,SON,SF,SVER,MSTART,MEND,IMETA,RMETA,SLC,SCC,SRL,TFR,CFR,CXTY,TTYL,ATNL,LAT,CENC,CURVER,SABIN from MRSAB where ~A='~A'" key-name key)))
+       (destructuring-bind
+	   (vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) it
+	 (make-instance 'usab :vcui (ensure-integer vcui) 
+			:rcui (ensure-integer rcui)
+			:vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart
+			:mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc
+			:srl (ensure-integer srl) 
+			:tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
+			:cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
+			:curver curver :sabin sabin))))
+
+(defun find-usab-rsab (rsab)
+  "Find usab for rsab"
+  (find-usab-by-key "RSAB" rsab))
+
+(defun find-usab-vsab (vsab)
+  "Find usab for vsab"
+  (find-usab-by-key "VSAB" vsab))
 
 (defun find-cui-max ()
   (let ((cui (caar (mutex-sql-query "select max(CUI) from MRCON"))))
@@ -643,6 +688,15 @@
 	    ustrs))
     ustrs))
 
+;; Special tables
+
+(defun find-usrl-all ()
+  (let ((usrls '())
+	(tuples (mutex-sql-query "select SAB,SRL from USRL order by SAB desc")))
+    (dolist (tuple tuples)
+      (push (make-instance 'usrl :sab (nth 0 tuple)
+			   :srl (ensure-integer (nth 1 tuple))) usrls))
+    usrls))
 
 ;;; Multiword lookup and score functions