X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=sql-classes.lisp;h=9e71b0f7b09972c0dcc41a68fce99b222e31857a;hb=dff3199405205cf99782dd3abf9d9dde187f5494;hp=c33a34362c4fd7f730508f6e931fcd2667bcae65;hpb=31094d0b33bfd5cecceb2b77d5f51e4b78365b98;p=umlisp.git diff --git a/sql-classes.lisp b/sql-classes.lisp index c33a343..9e71b0f 100644 --- a/sql-classes.lisp +++ b/sql-classes.lisp @@ -7,7 +7,7 @@ ;;;; Author: Kevin M. Rosenberg ;;;; Date Started: Apr 2000 ;;;; -;;;; $Id: sql-classes.lisp,v 1.19 2003/05/02 22:30:34 kevin Exp $ +;;;; $Id: sql-classes.lisp,v 1.75 2003/05/07 22:53:36 kevin Exp $ ;;;; ;;;; This file, part of UMLisp, is ;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D. @@ -26,104 +26,170 @@ (defun current-srl! (srl) (setq *current-srl* srl)) +(defmacro query-string (table fields &optional srl where-name where-value + &key (lrl "KCUILRL") single distinct order like) + (let* ((%%fields (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)" + (if distinct "distinct " "") fields table)) + (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" + order) + "")) + (%%lrl (format nil " and ~:@(~A~)<=" lrl)) + (%%where (when where-name + (format nil " where ~:@(~A~)~A" where-name + (if like " like " ""))))) + `(concatenate + 'string + ,%%fields + ,@(when %%where (list %%where)) + ,@(when %%where + `((typecase ,where-value + (number + (concatenate 'string "=" (write-to-string ,where-value))) + (null + " is null") + (t + (format nil ,(if like "'%~A%'" "='~A'") ,where-value))))) + (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "") + ,@(when %%order (list %%order)) + ,@(when single (list " limit 1"))))) + +(defun query-string-eval (table fields &optional srl where-name where-value + &key (lrl "KCUILRL") single distinct order like) + (concatenate + 'string + (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)" + (if distinct "distinct " "") fields table) + (if where-name (format nil " where ~:@(~A~)" where-name) "") + (if where-name + (format nil + (typecase where-value + (number "=~D") + (null " is null") + (t + (if like " like '%~A%""='~A'"))) + where-value) + "") + (if srl (format nil " and ~:@(~A~)<=~D" lrl srl) "") + (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) "") + (if single " limit 1" ""))) + + +(defmacro umlisp-query (table fields srl where-name where-value + &key (lrl "KCUILRL") single distinct order like) + "Query the UMLisp database. Return a list of umlisp objects whose name +is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" + `(mutex-sql-query + (query-string ,table ,fields ,srl ,where-name ,where-value + :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like))) + +(defmacro umlisp-query-eval (table fields srl where-name where-value + &key (lrl "KCUILRL") single distinct order like) + "Query the UMLisp database. Return a list of umlisp objects whose name +is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" + `(mutex-sql-query + (query-string-eval ,table ,fields ,srl ,where-name ,where-value + :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like))) +;; only WHERE-VALUE and SRL are evaluated (defmacro with-umlisp-query ((table fields srl where-name where-value - &key (lrlname "KCUILRL") distinct single + &key (lrl "KCUILRL") distinct single order like) &body body) - (let ((query (gensym))) - `(unless (and ,where-name (not ,where-value)) - (let ((,query (umlisp-query ,table ,fields ,srl ,where-name ,where-value - :lrlname ,lrlname :single ,single :distinct ,distinct - :order ,order :like ,like))) - (if ,single - (let ((tuple (car ,query))) - (when tuple + (let ((value (gensym)) + (r (gensym))) + (if single + `(let* ((,value ,where-value) + (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single + :distinct ,distinct :order ,order + :like ,like)))) + ,@(unless where-name `((declare (ignore ,value)))) + (when tuple (destructuring-bind ,fields tuple ,@body))) - (loop - for tuple in ,query collect - (destructuring-bind ,fields tuple - ,@body))))))) - -(defun umlisp-query (table fields srl where-name where-value - &key (lrlname "KCUILRL") single distinct order like) - "Query the UMLisp database. Return a list of umlisp objects whose name -is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" - (when (or (not where-name) where-value) - (mutex-sql-query - (query-string table fields srl where-name where-value - :lrlname lrlname :single single :distinct distinct :order order :like like)))) - - -(defun query-string (table fields &optional srl where-name where-value - &key (lrlname "KCUILRL") single distinct order like) - (let ((qs (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)" - (if distinct "distinct " "") - fields table))) - (when where-name - (setq qs (concatenate 'string qs - (format nil - (if (stringp where-value) - (if like - " where ~A like '%~A%'" - " where ~A='~A'") - " where ~A=~A") - where-name where-value)))) - (when srl - (setq qs (concatenate 'string qs (format nil " and ~:@(~A~) <= ~D" - lrlname srl)))) - (when order - (setq qs (concatenate 'string qs - (format nil " order by ~{~:@(~A) ~A~^,~}" - (flatten - (loop for o in order - collect - (if (atom o) - (list o 'asc) - o))))))) - (when single - (setq qs (concatenate 'string qs " limit 1"))) - qs)) + `(let ((,value ,where-value)) + ,@(unless where-name `((declare (ignore ,value)))) + (let ((,r '())) + (dolist (tuple (umlisp-query ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like)) + (push (destructuring-bind ,fields tuple ,@body) ,r)) + (nreverse ,r)) + #+ignore + (loop for tuple in + (umlisp-query ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like) + collect (destructuring-bind ,fields tuple ,@body)))))) + +(defmacro with-umlisp-query-eval ((table fields srl where-name where-value + &key (lrl "KCUILRL") distinct single + order like) + &body body) + (let ((value (gensym)) + (r (gensym)) + (eval-fields (cadr fields))) + (if single + `(let* ((,value ,where-value) + (tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single + :distinct ,distinct :order ,order + :like ,like)))) + (when tuple + (destructuring-bind ,eval-fields tuple + ,@body))) + `(let ((,value ,where-value) + (,r '())) + (dolist (tuple (umlisp-query-eval ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like)) + (push (destructuring-bind ,eval-fields tuple ,@body) ,r)) + (nreverse ,r) + #+ignore + (loop for tuple in + (umlisp-query-eval ,table ,fields ,srl ,where-name ,value + :lrl ,lrl :single ,single :distinct ,distinct + :order ,order :like ,like) + collect (destructuring-bind ,eval-fields tuple ,@body)))))) + +;;; +;;; Read from SQL database (defun find-ucon-cui (cui &key (srl *current-srl*)) "Find ucon for a cui" - (with-umlisp-query ('mrcon (kpfstr kcuilrl) srl 'cui (parse-cui cui) :single t) - (make-instance 'ucon :cui (parse-cui cui) - :pfstr kpfstr2 + (with-umlisp-query (mrcon (kpfstr kcuilrl) srl cui (parse-cui cui) :single t) + (make-instance 'ucon :cui (parse-cui cui) :pfstr kpfstr :lrl (ensure-integer kcuilrl)))) - (defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*)) "Find ucon for a cui" - (with-umlisp-query ('mrcon (kcuilrl) srl 'cui (parse-cui cui) :single t) - (make-instance 'ucon :cui (parse-cui cui) - :lrl (ensure-integer kcuilrl) + (with-umlisp-query (mrcon (kcuilrl) srl cui (parse-cui cui) :single t) + (make-instance 'ucon :cui (parse-cui cui) :lrl (ensure-integer kcuilrl) :pfstr nil))) (defun find-pfstr-cui (cui &key (srl *current-srl*)) "Find preferred string for a cui" - (with-umlisp-query ('mrcon (kpfstr) srl 'cui (parse-cui cui) :single t) + (with-umlisp-query (mrcon (kpfstr) srl cui (parse-cui cui) :single t) kpfstr)) (defun find-ucon-lui (lui &key (srl *current-srl*)) "Find list of ucon for lui" - (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'lui (parse-lui lui) :distinct t) - (make-instance 'ucon :cui (ensure-integer cui) - :pfstr kpfstr - :lrl (ensure-integer lrl)))) + (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui (parse-lui lui) + :distinct t) + (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr + :lrl (ensure-integer kcuilrl)))) (defun find-ucon-sui (sui &key (srl *current-srl*)) "Find list of ucon for sui" - (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'sui (parse-sui sui) :distinct t) - (make-instance 'ucon :cui (ensure-integer cui) - :pfstr kpfstr - :lrl (ensure-integer kcuilrl))))) + (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui (parse-sui sui) + :distinct t) + (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr + :lrl (ensure-integer kcuilrl)))) (defun find-ucon-cuisui (cui sui &key (srl *current-srl*)) "Find ucon for cui/sui" (when (and cui sui) - (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'kcuisui + (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl kcuisui (make-cuisui (parse-cui cui) (parse-sui sui))) (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr @@ -131,9 +197,8 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-ucon-str (str &key (srl *current-srl*)) "Find ucon that are exact match for str" - (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'str str :distinct t) - (make-instance 'ucon :cui (ensure-integer cui) - :pfstr kpfstr + (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t) + (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr :lrl (ensure-integer kcuilrl)))) (defun find-ucon-all (&key (srl *current-srl*)) @@ -145,9 +210,18 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (make-instance 'ucon :cui (ensure-integer cui) :pfstr pfstr :lrl (ensure-integer cuilrl))) - (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil :order '((cui asc)) :distinct t) + (query-string mrcon (cui kpfstr kcuilrl) srl nil nil + :order (cui asc) :distinct t) :database db))) +(defun find-ucon-all2 (&key (srl *current-srl*)) + "Return list of all ucon's" + (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc) + :distinct t) + (make-instance 'ucon :cui (ensure-integer cui) + :pfstr kpfstr + :lrl (ensure-integer kcuilrl)))) + (defun map-ucon-all (fn &key (srl *current-srl*)) "Map a function over all ucon's" (with-sql-connection (db) @@ -158,59 +232,67 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (make-instance 'ucon :cui (ensure-integer cui) :pfstr pfstr :lrl (ensure-integer cuilrl)))) - (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil :order '((cui asc)) :distinct t) + (query-string mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc) + :distinct t) :database db))) (defun find-udef-cui (cui &key (srl *current-srl*)) "Return a list of udefs for cui" - (with-umlisp-query ('mrdef (sab def) srl 'cui (parse-cui cui) :lrlname "KSRL") + (with-umlisp-query (mrdef (sab def) srl cui (parse-cui cui) :lrl "KSRL") (make-instance 'udef :sab sab :def def))) (defun find-usty-cui (cui &key (srl *current-srl*)) "Return a list of usty for cui" - (with-umlisp-query ('mrsty (tui sty) srl 'cui (parse-cui cui) :lrlname "KLRL") + (with-umlisp-query (mrsty (tui sty) srl cui (parse-cui cui) :lrl "KLRL") (make-instance 'usty :tui (ensure-integer tui) :sty sty))) (defun find-usty-word (word &key (srl *current-srl*)) "Return a list of usty that match word" - (with-umlisp-query ('mrsty (tui sty) srl 'sty word :lrlname 'klrl :like t :distinct t) + (with-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t + :distinct t) (make-instance 'usty :tui (ensure-integer tui) :sty sty))) (defun find-urel-cui (cui &key (srl *current-srl*)) "Return a list of urel for cui" - (with-umlisp-query ('mrrel (rel cui2 rela sab sl mg kpfstr2) srl 'cui1 (parse-cui cui) :lrlname "KSRL") - (make-instance 'urel :cui1 (parse-cui cui) :rel rel :cui2 (ensure-integer cui2) :rela rela - :sab sab :sl sl :mg mg :pfstr2 kpfstr2))) + (with-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1 + (parse-cui cui) :lrl "KSRL") + (make-instance 'urel :cui1 (parse-cui cui) :rel rel + :cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl + :mg mg :pfstr2 kpfstr2))) (defun find-urel-cui2 (cui2 &key (srl *current-srl*)) "Return a list of urel for cui2" - (with-umlisp-query ('mrrel (rel cui1 rela sab sl mg kpfstr2) srl 'cui2 (parse-cui cui2) :lrlname "KSRL") - (make-instance 'urel :cui2 (parse-cui cui2) :rel rel :cui1 (ensure-integer cui1) :rela rela - :sab sab :sl sl :mg mg :pfstr2 kpfstr2)))) + (with-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2 + (parse-cui cui2) :lrl "KSRL") + (make-instance 'urel :cui2 (parse-cui cui2) :rel rel + :cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl + :mg mg :pfstr2 kpfstr2))) (defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*)) - (mapcar - #'(lambda (cui) (find-ucon-cui cui :srl srl)) - (remove-duplicates (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl))))) + (loop for cui in (remove-duplicates + (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl))) + collect (find-ucon-cui cui :srl srl))) (defun find-ucoc-cui (cui &key (srl *current-srl*)) "Return a list of ucoc for cui" - (with-umlisp-query ('mrcoc (cui2 soc cot cof coa kpfstr2) srl 'cui1 (parse-cui cui) - :lrlname "KSRL" :order '((cof asc))) + (with-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1 + (parse-cui cui) :lrl klrl :order (cof asc)) (setq cui2 (ensure-integer cui2)) (when (zerop cui2) (setq cui2 nil)) - (make-instance 'ucoc :cui1 (parse-cui cui) :cui2 (ensure-integer cui2) :soc soc :cot cot - :cof (ensure-integer cof) :coa coa :pfstr2 kpfstr2))) + (make-instance 'ucoc :cui1 (parse-cui cui) :cui2 (ensure-integer cui2) + :soc soc :cot cot :cof (ensure-integer cof) :coa coa + :pfstr2 kpfstr2))) (defun find-ucoc-cui2 (cui2 &key (srl *current-srl*)) "Return a list of ucoc for cui2" - (with-umlisp-query ('mrcoc (cui1 soc cot cof coa kpfstr2) srl 'cui2 (parse-cui cui2) - :lrlname "KSRL" :order '((cof asc))) + (with-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2 + (parse-cui cui2) :lrl klrl :order (cof asc)) (setq cui2 (ensure-integer cui2)) (when (zerop cui2) (setq cui2 nil)) - (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 (parse-cui cui2) :soc soc :cot cot - :cof (ensure-integer cof) :coa coa :pfstr2 kpfstr2))) + (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 (parse-cui cui2) + :soc soc :cot cot :cof (ensure-integer cof) :coa coa + :pfstr2 kpfstr2))) (defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*)) "List of ucon with co-occurance cui2" @@ -220,71 +302,71 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-ulo-cui (cui &key (srl *current-srl*)) "Return a list of ulo for cui" - (with-umlisp-query ('mrlo (isn fr un sui sna soui) srl 'cui (parse-cui cui) :lrlname "KLRL") - (make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un :sui (ensure-integer sui) :sna sna - :soui soui))) - -(defgeneric suistr (lo)) -(defmethod suistr ((lo ulo)) - "Return the string for a ulo object" - (find-string-sui (sui lo))) + (with-umlisp-query (mrlo (isn fr un sui sna soui) srl cui (parse-cui cui) + :lrl "KLRL") + (make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un + :sui (ensure-integer sui) :sna sna :soui soui))) (defun find-uatx-cui (cui &key (srl *current-srl*)) "Return a list of uatx for cui" - (with-umlisp-query ('mratx (sab rel atx) srl 'cui (parse-cui cui) :lrlname 'ksrl) + (with-umlisp-query (mratx (sab rel atx) srl cui (parse-cui cui) :lrl ksrl) (make-instance 'uatx :sab sab :rel rel :atx atx))) (defun find-uterm-cui (cui &key (srl *current-srl*)) "Return a list of uterm for cui" - (with-umlisp-query ('mrcon (lui lat ts kluilrl) srl 'cui (parse-cui cui) :lrlname 'kluilrl - :distinct t) + (with-umlisp-query (mrcon (lui lat ts kluilrl) srl cui (parse-cui cui) + :lrl kluilrl :distinct t) (make-instance 'uterm :lui (ensure-integer lui) :cui (parse-cui cui) - :lat lat :ts ts :lrl (ensure-integer lrl)))) + :lat lat :ts ts :lrl (ensure-integer kluilrl)))) (defun find-uterm-lui (lui &key (srl *current-srl*)) "Return a list of uterm for lui" - (with-umlisp-query ('mrcon (cui lat ts kluilrl) srl 'lui (parse-lui lui) - :lrlname 'kluilrl :distinct t) + (with-umlisp-query (mrcon (cui lat ts kluilrl) srl lui (parse-lui lui) + :lrl kluilrl :distinct t) (make-instance 'uterm :cui (ensure-integer cui) :lui (parse-lui lui) :lat lat :ts ts :lrl (ensure-integer kluilrl)))) - (defun find-uterm-cuilui (cui lui &key (srl *current-srl*)) "Return single uterm for cui/lui" - (with-umlisp-query ('mrcon (lat ts kluilrl) srl 'kcuilui + (with-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui (make-cuilui (parse-cui cui) (parse-lui lui)) - :lrlname 'kluilrl :single t) - (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts :lrl (ensure-integer kluilrl))))) + :lrl kluilrl :single t) + (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts + :lrl (ensure-integer kluilrl)))) (defun find-ustr-cuilui (cui lui &key (srl *current-srl*)) "Return a list of ustr for cui/lui" - (with-umlisp-query ('mrcon (sui stt str lrl) srl 'kcuilui (make-cuilui cui lui) :lrlname 'lrl) + (with-umlisp-query (mrcon (sui stt str lrl) srl kcuilui + (make-cuilui cui lui) :lrl lrl) (make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui :cuisui (make-cuisui cui sui) :stt stt :str str :lrl (ensure-integer lrl)))) (defun find-ustr-cuisui (cui sui &key (srl *current-srl*)) "Return the single ustr for cuisui" - (with-umlisp-query ('mrcon (lui stt str lrl) srl 'kcuisui (make-cuisui cui sui) :lrlname 'lrl :single t) + (with-umlisp-query (mrcon (lui stt str lrl) srl kcuisui + (make-cuisui cui sui) :lrl lrl :single t) (make-instance 'ustr :sui sui :cui cui :cuisui (make-cuisui cui sui) - :lui (ensure-integer lui) :stt stt :str str :lrl (ensure-integer lrl)))) + :lui (ensure-integer lui) :stt stt :str str + :lrl (ensure-integer lrl)))) (defun find-ustr-sui (sui &key (srl *current-srl*)) "Return the list of ustr for sui" - (with-umlisp-query ('mrcon (cui lui stt str lrl) srl 'sui (parse-sui sui) :lrlname 'lrl) + (with-umlisp-query (mrcon (cui lui stt str lrl) srl sui (parse-sui sui) + :lrl lrl) (make-instance 'ustr :sui sui :cui cui :stt stt :str str :cuisui (make-cuisui (ensure-integer cui) (parse-sui sui)) - :lui (ensure-integer lui) - :lrl (ensure-integer lrl)))) + :lui (ensure-integer lui) :lrl (ensure-integer lrl)))) (defun find-ustr-sab (sab &key (srl *current-srl*)) "Return the list of ustr for sab" - (with-umlisp-query ('mrso '(kcuisui) srl 'sab sab :lrlname 'srl) - (let ((cuisui (ensure-integer (car tuple)))) + (with-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl) + (let ((cuisui (ensure-integer kcuisui))) (apply #'find-ustr-cuisui (append - (multiple-value-list (decompose-cuisui cuisui)) (list :srl srl)))))) + (multiple-value-list (decompose-cuisui cuisui)) + (list :srl srl)))))) (defun find-ustr-all (&key (srl *current-srl*)) "Return list of all ustr's" @@ -292,101 +374,97 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (clsql:map-query 'list #'(lambda (cui lui sui stt lrl pfstr) - (setq cui (ensure-integer cui)) - (setq lui (ensure-integer lui)) - (setq sui (ensure-integer sui)) - (setq lrl (ensure-integer lrl)) - (make-instance 'ustr :cui cui - :lui lui - :sui sui - :cuisui (make-cuisui cui sui) - :stt stt - :lrl lrl - :str pfstr)) - (query-string 'mrcon '(cui lui sui stt lrl kpfstr) srl nil nil :lrlname 'lrl :distinct t - :order '((sui asc))) + (make-instance 'ustr :cui (ensure-integer cui) + :lui (ensure-integer lui) :sui (ensure-integer sui) + :stt stt :str pfstr + :cuisui (make-cuisui (ensure-integer cui) + (ensure-integer sui)) + :lrl (ensure-integer lrl))) + (query-string mrcon (cui lui sui stt lrl kpfstr) srl nil nil :lrl lrl + :distinct t + :order (sui asc)) :database db))) (defun find-string-sui (sui &key (srl *current-srl*)) "Return the string associated with sui" - (with-umlisp-query ('mrcon '(str) srl 'sui sui :lrlname 'lrl :single t) - (car tuple))) + (with-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t) + str)) (defun find-uso-cuisui (cui sui &key (srl *current-srl*)) - (with-umlisp-query ('mrso (sab code srl tty) srl 'kcuisui (make-cuisui cui sui) :lrlname 'srl) + (with-umlisp-query (mrso (sab code srl tty) srl kcuisui + (make-cuisui cui sui) :lrl srl) (make-instance 'uso :sab sab :code code :srl srl :tty tty))) (defun find-ucxt-cuisui (cui sui &key (srl *current-srl*)) - (with-umlisp-query ('mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela cx) srl 'kcuisui - (make-cuisui cui sui) :lrlname 'ksrl) + (with-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc) + srl kcuisui (make-cuisui cui sui) :lrl ksrl) (make-instance 'ucxt :sab sab :code code - :cxn (ensure-integer cxn) - :cxl cxl :cxs cxs :hcd hcd :rela rela :xc xc - :rnk (ensure-integer rnk) + :cxn (ensure-integer cxn) :cxl cxl :cxs cxs :hcd hcd + :rela rela :xc xc :rnk (ensure-integer rnk) :cui2 (ensure-integer cui2)))) (defun find-usat-ui (cui &optional (lui nil) (sui nil) &key (srl *current-srl*)) (let ((ls (format nil "select CODE,ATN,SAB,ATV from MRSAT where "))) (cond - (sui (string-append ls (format nil "KCUISUI=~d" (make-cuisui cui sui)))) - (lui (string-append ls (format nil "KCUILUI=~d and sui=0" (make-cuilui cui lui)))) - (t (string-append ls (format nil "cui=~d and lui=0 and sui=0" cui)))) + (sui (string-append ls (format nil "KCUISUI=~D" (make-cuisui cui sui)))) + (lui (string-append ls (format nil "KCUILUI=~D and sui=0" + (make-cuilui cui lui)))) + (t (string-append ls (format nil "cui=~D and lui=0 and sui=0" cui)))) (when srl - (string-append ls (format nil " and KSRL <= ~d" srl))) - (let ((usats '())) - (dolist (tuple (mutex-sql-query ls)) - (destructuring-bind (code atn sab atv) tuple - (push (make-instance 'usat :code code :atn atn :sab sab :atv atv) - usats))) - (nreverse usats)))) - + (string-append ls (format nil " and KSRL <= ~D" srl))) + (loop for tuple in (mutex-sql-query ls) collect + (destructuring-bind (code atn sab atv) tuple + (make-instance 'usat :code code :atn atn :sab sab :atv atv))))) (defun find-usty-tui (tui) "Find usty for tui" - (with-umlisp-query ('mrsty (sty) nil 'tui (parse-tui tui) :single t) + (with-umlisp-query (mrsty (sty) nil tui (parse-tui tui) :single t) (make-instance 'usty :tui (parse-tui tui) :sty sty))) (defun find-usty-sty (sty) "Find usty for a sty" - (with-umlisp-query ('mrsty (tui) nil 'sty sty :single t) + (with-umlisp-query (mrsty (tui) nil sty sty :single t) (make-instance 'usty :tui (ensure-integer tui) :sty sty))) (defun find-usty-all () "Return list of usty's for all semantic types" - (with-umlisp-query ('mrsty '(tui) nil nil nil :distinct t) + (with-umlisp-query (mrsty (tui) nil nil nil :distinct t) (find-usty-tui tui))) (defun find-usab-all () "Find usab for a key" - (with-umlisp-query ('mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) nil nil nil) + (with-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta + rmeta slc scc srl tfr cfr cxty ttyl atnl lat + cenc curver sabin) nil nil nil) (make-instance 'usab :vcui (ensure-integer vcui) - :rcui (ensure-integer rcui) - :vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart - :mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc - :srl (ensure-integer srl) + :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son + :sf sf :sver sver :mstart mstart :mend mend :imeta imeta + :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl) :tfr (ensure-integer tfr) :cfr (ensure-integer cfr) :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc :curver curver :sabin sabin))) (defun find-usab-by-key (key-name key) "Find usab for a key" - (with-umlisp-query ('mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) nil key-name key :single t) + (with-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver mstart + mend imeta rmeta slc scc srl tfr cfr cxty + ttyl atnl lat cenc curver sabin) + nil key-name key :single t) (make-instance 'usab :vcui (ensure-integer vcui) - :rcui (ensure-integer rcui) - :vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart - :mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc - :srl (ensure-integer srl) + :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son + :sf sf :sver sver :mstart mstart :mend mend :imeta imeta + :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl) :tfr (ensure-integer tfr) :cfr (ensure-integer cfr) :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc :curver curver :sabin sabin))) (defun find-usab-rsab (rsab) "Find usab for rsab" - (find-usab-by-key "RSAB" rsab)) + (find-usab-by-key 'rsab rsab)) (defun find-usab-vsab (vsab) "Find usab for vsab" - (find-usab-by-key "VSAB" vsab)) + (find-usab-by-key 'vsab vsab)) (defun find-cui-max () (ensure-integer (caar (mutex-sql-query "select max(CUI) from MRCON")))) @@ -395,39 +473,50 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-ucon-tui (tui &key (srl *current-srl*)) "Find list of ucon for tui" - (with-umlisp-query ('mrsty (cui) srl 'tui (parse-tui tui) :lrlname 'klrl :order '((cui asc))) + (with-umlisp-query (mrsty (cui) srl tui (parse-tui tui) :lrl klrl :order (cui asc)) (find-ucon-cui (ensure-integer cui) :srl srl))) (defun find-ucon-word (word &key (srl *current-srl*) (like nil)) "Return list of ucons that match word. Optionally, use SQL's LIKE syntax" - (with-umlisp-query ('mrxw_eng (cui) srl 'wd word :like like :distinct t - :lrlname 'klrl :order '((cui asc))) + (with-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t + :lrl 'klrl :order '(cui asc)) (find-ucon-cui cui :srl srl))) (defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil)) "Return list of ucons that match word, optionally use SQL's LIKE syntax" - (with-umlisp-query ('mrxnw_eng (cui) srl 'nwd word :like like :distinct t - :lrlname 'klrl :order '((cui asc))) + (with-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t + :lrl 'klrl :order '(cui asc)) (find-ucon-cui cui :srl srl))) (defun find-ustr-word (word &key (srl *current-srl*)) "Return list of ustrs that match word" - (with-umlisp-query ('mrxw_eng (cui sui) srl 'wd word - :lrlname 'klrl - :order '((cui asc) (sui asc))) + (with-umlisp-query (mrxw_eng (cui sui) srl wd word :lrl klrl + :order (cui asc sui asc)) (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl))) (defun find-ustr-normalized-word (word &key (srl *current-srl*)) "Return list of ustrs that match word" - (with-umlisp-query ('mrxnw_eng (cui sui) srl 'nwd word :lrlname 'klrl - :order '((cui asc) (sui asc))) + (with-umlisp-query (mrxnw_eng (cui sui) srl nwd word :lrl klrl + :order (cui asc sui asc)) + (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl))) + +(defun find-ucon-noneng-word (word &key (srl *current-srl*) (like nil)) + "Return list of ucons that match non-english word" + (with-umlisp-query-eval ('mrxw_noneng '(cui) srl 'wd word :like like + :distinct t :lrl 'klrl :order '(cui asc)) + (find-ucon-cui cui :srl srl))) + +(defun find-ustr-noneng-word (word &key (srl *current-srl*)) + "Return list of ustrs that match non-english word" + (with-umlisp-query (mrxw_noneng (cui sui) srl wd word :lrl klrl + :order (cui asc sui asc)) (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl))) ;; Special tables (defun find-usrl-all () - (with-umlisp-query ('usrl (sab srl) nil nil nil :order '((sab asc)) - (make-instance 'usrl :sab sab :srl (ensure-integer srl)) usrls)) + (with-umlisp-query (usrl (sab srl) nil nil nil :order (sab asc)) + (make-instance 'usrl :sab sab :srl (ensure-integer srl)))) ;;; Multiword lookup and score functions @@ -459,9 +548,7 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" "Sort a list of objects based on scoring to a string" (let ((scored '())) (dolist (obj objs) - (push - (list obj - (score-multiword-match str (funcall lookup-func obj))) + (push (list obj (score-multiword-match str (funcall lookup-func obj))) scored)) (mapcar #'car (sort scored #'> :key #'cadr)))) @@ -502,96 +589,96 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" ;;; LEX SQL functions (defun find-lexterm-eui (eui) - (with-umlisp-query ('lrwd (wrd) nil 'eui eui :single t) + (with-umlisp-query (lrwd (wrd) nil eui eui :single t) (make-instance 'lexterm :eui eui :wrd wrd))) (defun find-lexterm-word (wrd) - (with-umlisp-query ('lrwd (eui) nil 'wrd wrd) + (with-umlisp-query (lrwd (eui) nil wrd wrd) (make-instance 'lexterm :eui (ensure-integer eui) :wrd (copy-seq wrd)))) ;; LEX SQL Read functions (defun find-labr-eui (eui) - (with-umlisp-query ('lrabr (bas abr eui2 bas2) nil 'eui eui) + (with-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui) (make-instance 'labr :eui eui :bas bas :abr abr :bas2 bas2 :eui2 (ensure-integer eui2)))) (defun find-labr-bas (bas) - (with-umlisp-query ('labr (eui abr eui2 bas2) nil 'bas bas) + (with-umlisp-query (labr (eui abr eui2 bas2) nil bas bas) (make-instance 'labr :eui (ensure-integer eui) :abr abr :bas2 bas2 :bas (copy-seq bas) :eui2 (ensure-integer eui2)))) (defun find-lagr-eui (eui) - (with-umlisp-query ('lragr (str sca agr cit bas) nil 'eui eui) + (with-umlisp-query (lragr (str sca agr cit bas) nil eui eui) (make-instance 'lagr :eui eui :str str :sca sca :agr agr :cit cit :bas bas))) (defun find-lcmp-eui (eui) - (with-umlisp-query ('lrcmp (bas sca com) nil 'eui eui) + (with-umlisp-query (lrcmp (bas sca com) nil eui eui) (make-instance 'lcmp :eui eui :bas bas :sca sca :com com))) (defun find-lmod-eui (eui) - (with-umlisp-query ('lrmod (bas sca psn_mod fea) nil 'eui eui) - (make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psnmod :fea fea))) + (with-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui) + (make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psn_mod :fea fea))) (defun find-lnom-eui (eui) - (with-umlisp-query ('lrnom (bas sca eui2 bas2 sca2) nil 'eui eui) + (with-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui) (make-instance 'lnom :eui eui :bas bas :sca sca :bas2 bas2 :sca2 sca2 :eui2 (ensure-integer eui2)))) (defun find-lprn-eui (eui) - (with-umlisp-query ('lrprn (bas num gnd cas pos qnt fea) nil 'eui eui) + (with-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui) (make-instance 'lprn :eui eui :bas bas :num num :gnd gnd :cas cas :pos pos :qnt qnt :fea fea))) (defun find-lprp-eui (eui) - (with-umlisp-query ('lrprp (bas str sca fea) nil 'eui eui) + (with-umlisp-query (lrprp (bas str sca fea) nil eui eui) (make-instance 'lprp :eui eui :bas bas :str str :sca sca :fea fea))) (defun find-lspl-eui (eui) - (with-umlisp-query ('lrspl (spv bas) nil 'eui eui) + (with-umlisp-query (lrspl (spv bas) nil eui eui) (make-instance 'lspl :eui eui :spv spv :bas bas))) (defun find-ltrm-eui (eui) - (with-umlisp-query ('lrtrm (bas gen) nil 'eui eui) + (with-umlisp-query (lrtrm (bas gen) nil eui eui) (make-instance 'ltrm :eui eui :bas bas :gen gen))) (defun find-ltyp-eui (eui) - (with-umlisp-query ('lrtyp (bas sca typ) nil 'eui eui) + (with-umlisp-query (lrtyp (bas sca typ) nil eui eui) (make-instance 'ltyp :eui eui :bas bas :sca sca :typ typ))) (defun find-lwd-wrd (wrd) (make-instance 'lwd :wrd - :euilist (with-umlisp-query ('lrwd (eui) nil 'wrd wrd) + :euilist (with-umlisp-query (lrwd (eui) nil wrd wrd) (ensure-integer eui)))) ;;; Semantic Network SQL access functions (defun find-sdef-ui (ui) - (with-umlisp-query ('srdef (rt sty_rl stn_rtn def ex un rh abr rin) - nil 'ui ui :single t) - (make-instance 'sdef :rt rt :ui ui :styrl styrl :stnrtn stnrtn + (with-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin) + nil ui ui :single t) + (make-instance 'sdef :rt rt :ui ui :styrl sty_rl :stnrtn stn_rtn :def def :ex ex :un un :rh rh :abr abr :rin rin))) (defun find-sstre1-ui (ui) - (with-umlisp-query ('srstre1 (ui2 ui3) nil 'ui ui) + (with-umlisp-query (srstre1 (ui2 ui3) nil ui ui) (make-instance 'sstre1 :ui ui :ui2 (ensure-integer ui2) :ui3 (ensure-integer ui3)))) (defun find-sstre1-ui2 (ui2) - (with-umlisp-query ('srstre1 (ui ui3) nil 'ui2 ui2) + (with-umlisp-query (srstre1 (ui ui3) nil ui2 ui2) (make-instance 'sstre1 :ui (ensure-integer ui) :ui2 ui2 :ui3 (ensure-integer ui3)))) (defun find-sstr-rl (rl) - (with-umlisp-query ('srstre (sty_rl sty_rl2 ls) nil 'rl rl) - (make-instance 'sstr :rl rl :styrl styrl :styrl2 styrl2 :ls ls))) + (with-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl) + (make-instance 'sstr :rl rl :styrl sty_rl :styrl2 sty_rl2 :ls ls))) (defun find-sstre2-sty (sty) - (with-umlisp-query ('srstre2 (rl sty2) nil 'sty sty) + (with-umlisp-query (srstre2 (rl sty2) nil sty sty) (make-instance 'sstre2 :sty (copy-seq sty) :rl rl :sty2 sty2))) (defun find-sstr-styrl (styrl) - (with-umlisp-query ('srstr (rl sty_rl2 ls) nil 'styrl styrl) - (make-instance 'sstr :styrl styrl :rl rl :styrl2 styrl2 :ls ls))) + (with-umlisp-query (srstr (rl sty_rl2 ls) nil styrl styrl) + (make-instance 'sstr :styrl styrl :rl rl :styrl2 sty_rl2 :ls ls)))