X-Git-Url: http://git.kpe.io/?a=blobdiff_plain;f=sql.lisp;h=671e3213be703c208b27053bcd81afb049b9a2f7;hb=78849aa930b4215a487b0a08492989196556efdd;hp=94a7243e9da75dbbeeb019516f1405b4f1008de9;hpb=77d1409857f947a3fd9e8a07d19ff937952a25b5;p=umlisp.git

diff --git a/sql.lisp b/sql.lisp
index 94a7243..671e321 100644
--- a/sql.lisp
+++ b/sql.lisp
@@ -4,10 +4,10 @@
 ;;;;
 ;;;; Name:          sql.lisp
 ;;;; Purpose:       Low-level SQL routines data for UMLisp
-;;;; Programmer:    Kevin M. Rosenberg
+;;;; Author:        Kevin M. Rosenberg
 ;;;; Date Started:  Apr 2000
 ;;;;
-;;;; $Id: sql.lisp,v 1.4 2002/10/16 15:22:28 kevin Exp $
+;;;; $Id: sql.lisp,v 1.11 2003/05/06 02:14:59 kevin Exp $
 ;;;;
 ;;;; This file, part of UMLisp, is
 ;;;;    Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
@@ -16,16 +16,14 @@
 ;;;; as governed by the terms of the GNU General Public License.
 ;;;; *************************************************************************
 
-(in-package :umlisp)
-(declaim (optimize (speed 3) (safety 1) (compilation-speed 0) (debug 3)))
+(in-package #:umlisp)
 
-
-(defvar *umls-sql-dsn* "KUMLS2002AC")
-(defun umls-sql-dsn ()
-  *umls-sql-dsn*)
-(defun umls-sql-dsn! (dbname)
+(defvar *umls-sql-db* "KUMLS2003AA")
+(defun umls-sql-db ()
+  *umls-sql-db*)
+(defun umls-sql-db! (dbname)
   (sql-disconnect-pooled)
-  (setq *umls-sql-dsn* dbname))
+  (setq *umls-sql-db* dbname))
 
 (defvar *umls-sql-user* "secret")
 (defun umls-sql-user ()
@@ -57,8 +55,9 @@
 
 (defun sql-connect ()
   "Connect to UMLS database, automatically used pooled connections"
-  (clsql:connect `(,(umls-sql-host) ,(umls-sql-dsn) ,(umls-sql-user) ,(umls-sql-passwd)) 
-		 :database-type *umls-sql-type* :pool t))
+  (clsql:connect
+   `(,(umls-sql-host) ,(umls-sql-db) ,(umls-sql-user) ,(umls-sql-passwd)) 
+   :database-type *umls-sql-type* :pool t))
 
 (defun sql-disconnect (conn)
   "Disconnect from UMLS database, but put connection back into pool"
@@ -104,77 +103,3 @@
 (defun mutex-sql-query (cmd &key (types :auto))
   (with-mutex-sql (conn)
     (sql-query cmd conn :types types)))
-
-
-
-(defun make-usrl ()
-  (with-sql-connection (conn)
-    (sql-execute "drop table if exists USRL" conn)
-    (sql-execute "create table USRL (sab varchar(80), srl integer)" conn)
-    (dolist (tuple (mutex-sql-query "select distinct SAB,SRL from MRSO order by SAB asc"))
-      (sql-execute (format nil "insert into USRL (sab,srl) values ('~a',~d)" 
-			   (car tuple) (ensure-integer (cadr tuple)))
-		   conn)))
-  (find-usrl-all))
-
-(defun find-usrl-all ()
-  (let ((usrls '())
-	(tuples (mutex-sql-query "select SAB,SRL from USRL order by SAB desc")))
-    (dolist (tuple tuples)
-      (push (make-instance 'usrl :sab (nth 0 tuple)
-			   :srl (ensure-integer (nth 1 tuple))) usrls))
-    usrls))
-
-;; already reversed by sql
-
-(defun find-usrl_freq-all ()
-  (let ((freqs '()))
-    (dolist (usrl (find-usrl-all))
-      (let ((freq (ensure-integer 
-		   (caar (mutex-sql-query 
-			  (format nil "select count(*) from MRSO where SAB='~a'" 
-				  (sab usrl)))))))
-	(push (make-instance 'usrl_freq :usrl usrl :freq freq) freqs)))
-    (sort freqs #'> :key #'usrl_freq-freq)))
-
-
-(defun find-ucon-normalized-multiword (str &key (srl *current-srl*))
-  "Return sorted list of ucon's that match a multiword string"
-  (let* ((words (delimited-string-to-list str #\space))
-	 (ucons '())
-	 (nwords '()))
-    (dolist (word words)
-      (let ((nws (lvg:process-terms word)))
-	(dolist (nword nws)
-	  (push nword nwords))))
-    (dolist (word nwords)
-      (setq ucons (append ucons (find-ucon-word word :srl srl))))
-    (umlisp::sort-score-ucon-str str (delete-duplicates ucons :test #'eql :key #'cui))))
-(defun find-ustr-normalized-multiword (str &key (srl *current-srl*))
-  "Return sorted list of ustr's that match a multiword string"
-  (let* ((words (delimited-string-to-list str #\space))
-	 (ustrs '())
-	 (nwords '()))
-    (dolist (word words)
-      (let ((nws (lvg:process-terms word)))
-	(dolist (nword nws)
-	  (push nword nwords))))
-    (dolist (word nwords)
-      (setq ustrs (append ustrs (find-ustr-word word :srl srl))))
-    (umlisp::sort-score-ustr-str str (delete-duplicates ustrs :test #'eql :key #'ustr-cui))))
-
-(defun a (str)
-  (find-normalized-matches-for-str str #'find-ustr-normalized-word #'ustr-sui))
-
-(defun find-normalized-matches-for-str (str lookup-func key-func)
-  "Return list of objects that normalize match for words in string,
-eliminate duplicates."
-  (let ((objs '())
-	(nwords '()))
-    (dolist (word (delimited-string-to-list str #\space))
-      (dolist (nword (lvg:process-terms word))
-	(unless (member nword nwords :test #'string-equal)
-	  (push nword nwords))))
-    (dolist (nw nwords)
-      (setq objs (append objs (funcall lookup-func nw))))
-    (delete-duplicates objs :key key-func :test #'eql)))