aui
(fmt-aui (parse-integer aui))))
+(defgeneric fmt-rui (rui))
+(when *has-fixnum-class*
+ (defmethod fmt-rui ((rui fixnum))
+ (prefixed-fixnum-string aui #\A 8)))
+
+(defmethod fmt-rui ((rui integer))
+ (prefixed-integer-string rui #\A 8))
+
+(defmethod fmt-rui ((rui string))
+ (if (eql (aref rui 0) #\R)
+ rui
+ (fmt-rui (parse-integer rui))))
+
(defgeneric fmt-eui (e))
(when *has-fixnum-class*
(defmethod fmt-eui ((e fixnum))
(defparameter +col-datatypes+
'(("AV" sql-f) ("BTS" sql-i) ("CLS" sql-i) ("COF" sql-i) ("CUI1" sql-u)
("AUI" sql-u) ("AUI1" sql-u) ("AUI2" sql-u) ("PCUI" sql-u)
- ("PLUI" sql-u) ("PAUI" sql-u)
+ ("PLUI" sql-u) ("PAUI" sql-u) ("RUI" sql-u)
("CUI2" sql-u) ("CUI" sql-u) ("CXN" sql-s) ("FR" sql-i) ("LRL" sql-s)
("LUI" sql-u) ("MAX" sql-s) ("MIN" sql-s) ("RANK" sql-s) ("REF" sql-c)
("PTR" sql-c)
(defparameter +index-cols+
'(("CUI1" "MRCOC") ("CUI" "MRCONSO") ("LUI" "MRCONSO")
("SRL" "MRCONSO") ("AUI" "MRCONSO") ("KPFENG" "MRCONSO")
- ("SUI" "MRCONSO") ("CUI" "MRDEF")
- ("CUI1" "MRREL") ("CUI" "MRSAT") ("LUI" "MRSAT") ("SUI" "MRSAT")
- ("CUI" "MRSTY")
- ("TUI" "MRSTY") ("CUI" "MRXNS_ENG")
+ ("SUI" "MRCONSO") ("SAUI" "MRCONSO") ("CODE" "MRCONSO")
+ ("SCUI" "MRCONSO")
+ ("CUI" "MRDEF")
+ ("CUI1" "MRREL") ("CUI2" "MRREL")
+ ("RUI" "MRREL") ("AUI" "MRREL") ("AUI2" "MRREL")
+ ("CUI" "MRSAT") ("LUI" "MRSAT") ("SUI" "MRSAT")
+ ("METAUI" "MRSAT") ("ATN" "MRSAT")
+ ("CUI" "MRSTY") ("TUI" "MRSTY") ("CUI" "MRXNS_ENG")
("AUI" "MRHIER") ("PTR" "MRHIER" 255) ("CUI" "MRHIER") ("CXN" "MRHIER") ("RELA" "MRHIER") ("PAUI" "MRHIER")
("SAB" "MRHIER")
#+ignore ("NSTR" "MRXNS_ENG" 10)
(setq ,sui (parse-sui ,sui))
,sui))
+(defmacro ensure-aui-integer (aui)
+ `(if (stringp ,aui)
+ (setq ,aui (parse-aui ,aui))
+ ,aui))
+
+(defmacro ensure-rui-integer (rui)
+ `(if (stringp ,rui)
+ (setq ,rui (parse-rui ,rui))
+ ,rui))
+
(defmacro ensure-tui-integer (tui)
`(if (stringp ,tui)
(setq ,tui (parse-tui ,tui))
(defun find-ucon-aui (aui &key (srl *current-srl*))
"Find list of ucon for aui"
- (ensure-sui-integer aui)
+ (ensure-aui-integer aui)
(collect-umlisp-query (mrconso (cui kcuilrl) srl aui aui :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr (find-pfstr-cui cui)
:lrl (ensure-integer kcuilrl))))
srl cui1 cui :lrl "KSRL")
(make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
:cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2
- :rui rui :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
+ :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
+ :suppress suppress :cvf cvf :pfstr2 (find-pfstr-cui cui2))))
+
+(defun find-urel-rui (rui &key (srl *current-srl*))
+ "Return the urel for a rui"
+ (ensure-rui-integer rui)
+ (collect-umlisp-query (mrrel (aui1 rel stype1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
+ srl rui rui :lrl "KSRL" :single t)
+ (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
+ :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2
+ :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
:suppress suppress :cvf cvf :pfstr2 (find-pfstr-cui cui2))))
(defun find-cui2-urel-cui (cui &key (srl *current-srl*))
(ensure-cui-integer cui2)
(collect-umlisp-query (mrrel (rel cui1 aui1 stype1 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
srl cui2 cui2 :lrl "KSRL")
- (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2) :stype2 stype2 :rui rui :srui srui
- :stype1 stype1 :cui1 (ensure-integer cui1) :aui1 (ensure-integer aui1)
+ (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2)
+ :stype2 stype2 :rui (ensure-integer rui) :srui srui
+ :stype1 stype1 :cui1 (ensure-integer cui1)
+ :aui1 (ensure-integer aui1)
:rela rela :sab sab :sl sl :rg rg :dir dir :suppress suppress :cvf cvf
:pfstr2 (find-pfstr-cui cui2))))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
(ensure-sui-integer sui)
(ensure-cui-integer cui)
- (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str) srl kcuisui
- (make-cuisui cui sui) :lrl srl)
+ (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str)
+ srl kcuisui (make-cuisui cui sui) :lrl srl)
(make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty
:cui cui :sui sui :saui saui :sdui sdui :scui scui
:lat lat :str str)))