X-Git-Url: http://git.kpe.io/?p=ctsim.git;a=blobdiff_plain;f=doc%2Fctsim.tex;h=73deaf43dbbce8090180e9cdebb2bf174a68aff3;hp=a2af298271fe0d19b8891fba946e1bb4fff8981f;hb=d3fa225aa232e132cc198672c4fc148f96a1ab8c;hpb=c48151d8bbe76cc8368ff3f80de989ee3d7d8589

diff --git a/doc/ctsim.tex b/doc/ctsim.tex
index a2af298..73deaf4 100644
--- a/doc/ctsim.tex
+++ b/doc/ctsim.tex
@@ -2,44 +2,48 @@
 \usepackage{graphicx}
 \usepackage{texhelp}
 \usepackage{fancyhea}
-\usepackage{mysober}
+%\usepackage{mysober}
 \usepackage{mytitle}
-\usepackage{verbatim}
+%\usepackage{verbatim}
 \usepackage{makeidx}
-\usepackage{times}
+%\usepackage{times}
 \usepackage{hyperref}
 \input{psbox.tex}
 
+\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
+\hyphenation{poly-gon-al}
+
 \newcommand{\ctsim}{\texttt{CTSim}}
 \newcommand{\ctsimtext}{\texttt{CTSimText}}
 \newcommand{\usage}{\textbf{Usage}\par}
 
 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
 \newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
-\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}%
+\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
 \newcommand{\indexit}[1]{#1\index{#1}}%
 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
+
+\latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}%
+
 \parskip=10pt%
 \parindent=0pt%
 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
-\winhelpignore{\title{Manual for CTSim 3.0}%
+\title{CTSim 3.0 User Manual}%
 \author{Kevin Rosenberg, M.D.}%
-\date{January 2001}%
-}%
-\winhelponly{\title{Manual for CTSim 3.0}%
-\author{by Kevin Rosenberg, M.D.\\$$\image{3cm;3cm}{logo-huge.bmp}$$}%
-}%
+\date{February 9, 2001}%
 \makeindex%
+
 \begin{document}%
 \maketitle%
 \pagestyle{fancyplain}%
-\bibliographystyle{plain}%
 \pagenumbering{roman}%
 
 \setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
+\parskip=2pt
 \tableofcontents%
 
+\parskip=10pt
 \chapter*{Copyright notice}%
 \setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
@@ -67,7 +71,7 @@ PERFORMANCE OF THIS SOFTWARE.
 \setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 
-\image{3cm;3cm}{logo-huge.eps}
+$$\image{3cm;3cm}{logo-huge.eps}$$
 Computed Tomography is a technique for estimating the interior of an object
 from measurement of radiation collected around the object. This radiation
 can be either projected through or emitted from the object.
@@ -75,11 +79,16 @@ can be either projected through or emitted from the object.
 \rtfsp\ctsim\ can then reconstruct the interior of the object from the projections
 collected around the phantom object.
 
-The \ctsim\ package has two executable files: the graphical \helprefn{ctsim}{ctsim} and text \helprefn{ctsimtext}{ctsimtext} programs.
+This manual begins with an introduction into the concepts of
+\rtfsp\ctsim. Then, the graphical shell, \helprefn{ctsim}{ctsim},
+is documented followed the the command-line shell,
+\helprefn{ctsimtext}{ctsimtext}. Finally, the web-based
+\helprefn{interface}{webinterface} is discussed followed by
+\helprefn{installation}{installation} instructions.
 
-\include{ctsim-concepts}
+I hope that you enjoy \ctsim!
 
-\include{ctsim-install}
+\include{ctsim-concepts}
 
 \include{ctsim-gui}
 
@@ -87,6 +96,8 @@ The \ctsim\ package has two executable files: the graphical \helprefn{ctsim}{cts
 
 \include{ctsim-web}
 
+\include{ctsim-install}
+
 \include{ctsim-appendix}
 
 \newpage