X-Git-Url: http://git.kpe.io/?p=ctsim.git;a=blobdiff_plain;f=libctsim%2Fimagefile.cpp;h=51a8dea82e94f2924671f0a9998119b055963990;hp=946e4db75e17ee766a924939f2237b02a13ee1c7;hb=f13a8c004b8f182b42d9e4df2bcd7c7f030bf1ad;hpb=23f5654dacb1952c15bda92c2606fae3a55e48ad diff --git a/libctsim/imagefile.cpp b/libctsim/imagefile.cpp index 946e4db..51a8dea 100644 --- a/libctsim/imagefile.cpp +++ b/libctsim/imagefile.cpp @@ -1,15 +1,13 @@ /***************************************************************************** ** FILE IDENTIFICATION ** -** Name: imagefile.cpp -** Purpose: Imagefile classes -** Programmer: Kevin Rosenberg -** Date Started: June 2000 +** Name: imagefile.cpp +** Purpose: Imagefile classes +** Programmer: Kevin Rosenberg +** Date Started: June 2000 ** ** This is part of the CTSim program -** Copyright (C) 1983-2000 Kevin Rosenberg -** -** $Id: imagefile.cpp,v 1.34 2001/01/04 21:28:41 kevin Exp $ +** Copyright (c) 1983-2009 Kevin Rosenberg ** ** This program is free software; you can redistribute it and/or modify ** it under the terms of the GNU General Public License (version 2) as @@ -26,34 +24,91 @@ ******************************************************************************/ #include "ct.h" +#ifdef HAVE_CTN_DICOM +#include "ctndicom.h" +#endif +#include "interpolator.h" + +const double ImageFile::s_dRedGrayscaleFactor = 0.299; +const double ImageFile::s_dGreenGrayscaleFactor = 0.587; +const double ImageFile::s_dBlueGrayscaleFactor = 0.114; + + +const int ImageFile::EXPORT_FORMAT_INVALID = -1; +const int ImageFile::EXPORT_FORMAT_TEXT = 0; +const int ImageFile::EXPORT_FORMAT_PGM = 1; +const int ImageFile::EXPORT_FORMAT_PGMASCII = 2; +#ifdef HAVE_PNG +const int ImageFile::EXPORT_FORMAT_PNG = 3; +const int ImageFile::EXPORT_FORMAT_PNG16 = 4; +#endif +#ifdef HAVE_CTN_DICOM +const int ImageFile::EXPORT_FORMAT_DICOM = 5; +#endif +const int ImageFile::EXPORT_FORMAT_RAW = 6; -const int ImageFile::FORMAT_INVALID = -1; -const int ImageFile::FORMAT_PGM = 0; -const int ImageFile::FORMAT_PGMASCII = 1; +const char* ImageFile::s_aszExportFormatName[] = +{ + "text", + "pgm", + "pgmascii", #ifdef HAVE_PNG -const int ImageFile::FORMAT_PNG = 2; -const int ImageFile::FORMAT_PNG16 = 3; + "png", + "png16", +#endif +#ifdef HAVE_CTN_DICOM + "dicom", #endif +}; -const char* ImageFile::s_aszFormatName[] = +const char* ImageFile::s_aszExportFormatTitle[] = { - {"pgm"}, - {"pgmascii"}, + "Text", + "PGM", + "PGM ASCII", #ifdef HAVE_PNG - {"png"}, - {"png16"}, + "PNG", + "PNG 16-bit", +#endif +#ifdef HAVE_CTN_DICOM + "Dicom", #endif }; +const int ImageFile::s_iExportFormatCount = sizeof(s_aszExportFormatName) / sizeof(const char*); + + +const int ImageFile::IMPORT_FORMAT_INVALID = -1; +const int ImageFile::IMPORT_FORMAT_PPM = 0; +#ifdef HAVE_PNG +const int ImageFile::IMPORT_FORMAT_PNG = 1; +#endif +#ifdef HAVE_CTN_DICOM +const int ImageFile::IMPORT_FORMAT_DICOM = 2; +#endif + -const char* ImageFile::s_aszFormatTitle[] = +const char* ImageFile::s_aszImportFormatName[] = { - {"PGM"}, - {"PGM ASCII"}, - {"PNG"}, - {"PNG 16-bit"}, + "ppm", +#ifdef HAVE_PNG + "png", +#endif +#ifdef HAVE_CTN_DICOM + "dicom", +#endif }; -const int ImageFile::s_iFormatCount = sizeof(s_aszFormatName) / sizeof(const char*); +const char* ImageFile::s_aszImportFormatTitle[] = +{ + "PPM", +#ifdef HAVE_PNG + "PNG", +#endif +#ifdef HAVE_CTN_DICOM + "Dicom", +#endif +}; +const int ImageFile::s_iImportFormatCount = sizeof(s_aszImportFormatName) / sizeof(const char*); @@ -83,7 +138,7 @@ F64Image::F64Image (void) setDataType (Array2dFile::DATA_TYPE_REAL); } -void +void ImageFile::getCenterCoordinates (unsigned int& iXCenter, unsigned int& iYCenter) { if (isEven (m_nx)) @@ -98,12 +153,13 @@ ImageFile::getCenterCoordinates (unsigned int& iXCenter, unsigned int& iYCenter) } -void -ImageFile::filterResponse (const char* const domainName, double bw, const char* const filterName, double filt_param, double dInputScale, double dOutputScale) +void +ImageFile::filterResponse (const char* const domainName, double bw, const char* const filterName, + double filt_param, double dInputScale, double dOutputScale) { ImageFileArray v = getArray(); SignalFilter filter (filterName, domainName, bw, filt_param); - + unsigned int iXCenter, iYCenter; getCenterCoordinates (iXCenter, iYCenter); @@ -115,60 +171,6 @@ ImageFile::filterResponse (const char* const domainName, double bw, const char* } } -int -ImageFile::display (void) const -{ - double pmin, pmax; - - getMinMax (pmin, pmax); - - return (displayScaling (1, pmin, pmax)); -} - -int -ImageFile::displayScaling (const int scale, const ImageFileValue pmin, const ImageFileValue pmax) const -{ - int nx = m_nx; - int ny = m_ny; - ImageFileArrayConst v = getArray(); - if (v == NULL || nx == 0 || ny == 0) - return 0; - -#if HAVE_G2_H - int* pPens = new int [nx * ny * scale * scale ]; - - double view_scale = 255 / (pmax - pmin); - int id_X11 = g2_open_X11 (nx * scale, ny * scale); - int grayscale[256]; - for (int i = 0; i < 256; i++) { - double cval = i / 255.; - grayscale[i] = g2_ink (id_X11, cval, cval, cval); - } - - for (int iy = ny - 1; iy >= 0; iy--) { - int iRowPos = ((ny - 1 - iy) * scale) * (nx * scale); - for (int ix = 0; ix < nx; ix++) { - int cval = static_cast((v[ix][iy] - pmin) * view_scale); - if (cval < 0) - cval = 0; - else if (cval > 255) - cval = 255; - for (int sy = 0; sy < scale; sy++) - for (int sx = 0; sx < scale; sx++) - pPens[iRowPos+(sy * nx * scale)+(sx + (ix * scale))] = grayscale[cval]; - } - } - - g2_image (id_X11, 0., 0., nx * scale, ny * scale, pPens); - - delete pPens; - return (id_X11); -#else - return 0; -#endif -} - - // ImageFile::comparativeStatistics Calculate comparative stats // @@ -190,9 +192,9 @@ ImageFile::comparativeStatistics (const ImageFile& imComp, double& d, double& r, ImageFileArrayConst v = getArray(); if (v == NULL || m_nx == 0 || m_ny == 0) return false; - + ImageFileArrayConst vComp = imComp.getArray(); - + double myMean = 0.; for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { @@ -200,7 +202,7 @@ ImageFile::comparativeStatistics (const ImageFile& imComp, double& d, double& r, } } myMean /= (m_nx * m_ny); - + double sqErrorSum = 0.; double absErrorSum = 0.; double sqDiffFromMeanSum = 0.; @@ -215,10 +217,10 @@ ImageFile::comparativeStatistics (const ImageFile& imComp, double& d, double& r, absValueSum += fabs(v[ix2][iy]); } } - + d = ::sqrt (sqErrorSum / sqDiffFromMeanSum); r = absErrorSum / absValueSum; - + int hx = m_nx / 2; int hy = m_ny / 2; double eMax = -1; @@ -231,9 +233,9 @@ ImageFile::comparativeStatistics (const ImageFile& imComp, double& d, double& r, eMax = error; } } - + e = eMax; - + return true; } @@ -242,7 +244,7 @@ bool ImageFile::printComparativeStatistics (const ImageFile& imComp, std::ostream& os) const { double d, r, e; - + if (comparativeStatistics (imComp, d, r, e)) { os << " Normalized root mean squared distance (d): " << d << std::endl; os << " Normalized mean absolute distance (r): " << r << std::endl; @@ -257,18 +259,18 @@ void ImageFile::printStatistics (std::ostream& os) const { double min, max, mean, mode, median, stddev; - + statistics (min, max, mean, mode, median, stddev); if (isComplex()) os << "Real Component Statistics" << std::endl; - + os << " min: " << min << std::endl; os << " max: " << max << std::endl; os << " mean: " << mean << std::endl; os << " mode: " << mode << std::endl; os << "median: " << median << std::endl; os << "stddev: " << stddev << std::endl; - + if (isComplex()) { statistics (getImaginaryArray(), min, max, mean, mode, median, stddev); os << std::endl << "Imaginary Component Statistics" << std::endl; @@ -295,10 +297,10 @@ ImageFile::statistics (ImageFileArrayConst v, double& min, double& max, double& { int nx = m_nx; int ny = m_ny; - + if (v == NULL || nx == 0 || ny == 0) return; - + std::vector vecImage; int iVec = 0; vecImage.resize (nx * ny); @@ -306,7 +308,7 @@ ImageFile::statistics (ImageFileArrayConst v, double& min, double& max, double& for (int iy = 0; iy < ny; iy++) vecImage[iVec++] = v[ix][iy]; } - + vectorNumericStatistics (vecImage, nx * ny, min, max, mean, mode, median, stddev); } @@ -316,10 +318,10 @@ ImageFile::getMinMax (double& min, double& max) const int nx = m_nx; int ny = m_ny; ImageFileArrayConst v = getArray(); - + if (v == NULL || nx == 0 || ny == 0) return; - + min = v[0][0]; max = v[0][0]; for (int ix = 0; ix < nx; ix++) { @@ -337,17 +339,17 @@ ImageFile::convertRealToComplex () { if (dataType() != Array2dFile::DATA_TYPE_REAL) return false; - + if (! reallocRealToComplex()) return false; - + ImageFileArray vImag = getImaginaryArray(); for (unsigned int ix = 0; ix < m_nx; ix++) { ImageFileColumn vCol = vImag[ix]; for (unsigned int iy = 0; iy < m_ny; iy++) *vCol++ = 0; } - + return true; } @@ -356,7 +358,7 @@ ImageFile::convertComplexToReal () { if (dataType() != Array2dFile::DATA_TYPE_COMPLEX) return false; - + ImageFileArray vReal = getArray(); ImageFileArray vImag = getImaginaryArray(); for (unsigned int ix = 0; ix < m_nx; ix++) { @@ -368,7 +370,7 @@ ImageFile::convertComplexToReal () vImagCol++; } } - + return reallocComplexToReal(); } @@ -379,17 +381,17 @@ ImageFile::subtractImages (const ImageFile& rRHS, ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::subtractImage]"); return false; } - - if (isComplex() || rRHS.isComplex() && ! result.isComplex()) + + if (isComplex() || (rRHS.isComplex() && ! result.isComplex())) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArrayConst vRHS = rRHS.getArray(); ImageFileArrayConst vRHSImag = rRHS.getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { vResult[ix][iy] = vLHS[ix][iy] - vRHS[ix][iy]; @@ -402,7 +404,7 @@ ImageFile::subtractImages (const ImageFile& rRHS, ImageFile& result) const } } } - + return true; } @@ -413,17 +415,17 @@ ImageFile::addImages (const ImageFile& rRHS, ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::subtractImage]"); return false; } - - if (isComplex() || rRHS.isComplex() && ! result.isComplex()) + + if (isComplex() || (rRHS.isComplex() && ! result.isComplex())) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArrayConst vRHS = rRHS.getArray(); ImageFileArrayConst vRHSImag = rRHS.getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { vResult[ix][iy] = vLHS[ix][iy] + vRHS[ix][iy]; @@ -436,7 +438,7 @@ ImageFile::addImages (const ImageFile& rRHS, ImageFile& result) const } } } - + return true; } @@ -447,17 +449,17 @@ ImageFile::multiplyImages (const ImageFile& rRHS, ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::subtractImage]"); return false; } - - if (isComplex() || rRHS.isComplex() && ! result.isComplex()) + + if (isComplex() || (rRHS.isComplex() && ! result.isComplex())) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArrayConst vRHS = rRHS.getArray(); ImageFileArrayConst vRHSImag = rRHS.getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { if (result.isComplex()) { @@ -476,8 +478,8 @@ ImageFile::multiplyImages (const ImageFile& rRHS, ImageFile& result) const vResult[ix][iy] = vLHS[ix][iy] * vRHS[ix][iy]; } } - - + + return true; } @@ -488,17 +490,17 @@ ImageFile::divideImages (const ImageFile& rRHS, ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::subtractImage]"); return false; } - - if (isComplex() || rRHS.isComplex() && ! result.isComplex()) + + if (isComplex() || (rRHS.isComplex() && ! result.isComplex())) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArrayConst vRHS = rRHS.getArray(); ImageFileArrayConst vRHSImag = rRHS.getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { if (result.isComplex()) { @@ -521,7 +523,7 @@ ImageFile::divideImages (const ImageFile& rRHS, ImageFile& result) const } } } - + return true; } @@ -533,20 +535,20 @@ ImageFile::invertPixelValues (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + if (isComplex() && ! result.isComplex()) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArray vResult = result.getArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { ImageFileColumnConst in = vLHS[ix]; ImageFileColumn out = vResult[ix]; for (unsigned int iy = 0; iy < m_ny; iy++) *out++ = - *in++; } - + return true; } @@ -557,10 +559,10 @@ ImageFile::sqrt (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + if (isComplex() && ! result.isComplex()) result.convertRealToComplex(); - + bool bComplexOutput = result.isComplex(); ImageFileArrayConst vLHS = getArray(); if (! bComplexOutput) // check if should convert to complex output @@ -571,11 +573,11 @@ ImageFile::sqrt (ImageFile& result) const bComplexOutput = true; break; } - + ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { if (result.isComplex()) { @@ -590,8 +592,8 @@ ImageFile::sqrt (ImageFile& result) const vResult[ix][iy] = ::sqrt (vLHS[ix][iy]); } } - - + + return true; } @@ -599,18 +601,18 @@ bool ImageFile::log (ImageFile& result) const { if (m_nx != result.nx() || m_ny != result.ny()) { - sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::log]"); return false; } - + if (isComplex() && ! result.isComplex()) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { if (result.isComplex()) { @@ -621,12 +623,16 @@ ImageFile::log (ImageFile& result) const std::complex cResult = std::log (cLHS); vResult[ix][iy] = cResult.real(); vResultImag[ix][iy] = cResult.imag(); - } else - vResult[ix][iy] = ::log (vLHS[ix][iy]); + } else { + if (vLHS[ix][iy] > 0) + vResult[ix][iy] = ::log (vLHS[ix][iy]); + else + vResult[ix][iy] = 0; + } } } - - + + return true; } @@ -637,15 +643,15 @@ ImageFile::exp (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + if (isComplex() && ! result.isComplex()) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { if (result.isComplex()) { @@ -660,8 +666,8 @@ ImageFile::exp (ImageFile& result) const vResult[ix][iy] = ::exp (vLHS[ix][iy]); } } - - + + return true; } @@ -672,50 +678,36 @@ ImageFile::scaleImage (ImageFile& result) const unsigned int ny = m_ny; unsigned int newNX = result.nx(); unsigned int newNY = result.ny(); - + double dXScale = static_cast(newNX) / static_cast(nx); double dYScale = static_cast(newNY) / static_cast(ny); - + if (isComplex() && ! result.isComplex()) result.convertRealToComplex(); - + ImageFileArrayConst vReal = getArray(); ImageFileArrayConst vImag = getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + + BilinearInterpolator realInterp (vReal, nx, ny); + BilinearInterpolator imagInterp (vImag, nx, ny); + for (unsigned int ix = 0; ix < newNX; ix++) { for (unsigned int iy = 0; iy < newNY; iy++) { double dXPos = ix / dXScale; double dYPos = iy / dYScale; - unsigned int scaleNX = static_cast (dXPos); - unsigned int scaleNY = static_cast (dYPos); - double dXFrac = dXPos - scaleNX; - double dYFrac = dYPos - scaleNY; - if (scaleNX >= nx - 1 || scaleNY >= ny - 1) { - vResult[ix][iy] = vReal[scaleNX][scaleNY]; - if (result.isComplex()) { - if (isComplex()) - vResultImag[ix][iy] = vImag[scaleNX][scaleNY]; - else - vResultImag[ix][iy] = 0; - } - } else { - vResult[ix][iy] = vReal[scaleNX][scaleNY] + - dXFrac * (vReal[scaleNX+1][scaleNY] - vReal[scaleNX][scaleNY]) + - dYFrac * (vReal[scaleNX][scaleNY+1] - vReal[scaleNX][scaleNY]); - if (result.isComplex()) { - if (isComplex()) - vResultImag[ix][iy] = vImag[scaleNX][scaleNY] + - dXFrac * (vImag[scaleNX+1][scaleNY] - vImag[scaleNX][scaleNY]) + - dYFrac * (vImag[scaleNX][scaleNY+1] - vImag[scaleNX][scaleNY]); - else - vResultImag[ix][iy] = 0; + vResult[ix][iy] = realInterp.interpolate (dXPos, dYPos); + if (result.isComplex()) { + if (isComplex()) { + vResultImag[ix][iy] = imagInterp.interpolate (dXPos, dYPos); + } else { + vResultImag[ix][iy] = 0; } } } } - + return true; } @@ -727,51 +719,50 @@ ImageFile::fft (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + if (result.dataType() == Array2dFile::DATA_TYPE_REAL) { if (! result.convertRealToComplex ()) return false; } - - fftw_complex* in = new fftw_complex [m_nx * m_ny]; - + + fftw_complex* in = static_cast (fftw_malloc (sizeof(fftw_complex) * m_nx * m_ny)); + ImageFileArrayConst vReal = getArray(); ImageFileArrayConst vImag = getImaginaryArray(); - + unsigned int ix, iy; unsigned int iArray = 0; - for (ix = 0; ix < m_nx; ix++) + for (ix = 0; ix < m_nx; ix++) { for (iy = 0; iy < m_ny; iy++) { - in[iArray].re = vReal[ix][iy]; + in[iArray][0] = vReal[ix][iy]; if (isComplex()) - in[iArray].im = vImag[ix][iy]; + in[iArray][1] = vImag[ix][iy]; else - in[iArray].im = 0; + in[iArray][1] = 0; iArray++; } - - fftwnd_plan plan = fftw2d_create_plan (m_nx, m_ny, FFTW_FORWARD, FFTW_IN_PLACE); - - fftwnd_one (plan, in, NULL); - - ImageFileArray vRealResult = result.getArray(); - ImageFileArray vImagResult = result.getImaginaryArray(); - iArray = 0; - unsigned int iScale = m_nx * m_ny; - for (ix = 0; ix < m_nx; ix++) - for (iy = 0; iy < m_ny; iy++) { - vRealResult[ix][iy] = in[iArray].re / iScale; - vImagResult[ix][iy] = in[iArray].im / iScale; - iArray++; - } - - fftwnd_destroy_plan (plan); - delete in; - - - Fourier::shuffleFourierToNaturalOrder (result); - - return true; + } + + fftw_plan plan = fftw_plan_dft_2d (m_nx, m_ny, in, in, FFTW_FORWARD, FFTW_ESTIMATE); + fftw_execute (plan); + + ImageFileArray vRealResult = result.getArray(); + ImageFileArray vImagResult = result.getImaginaryArray(); + iArray = 0; + unsigned int iScale = m_nx * m_ny; + for (ix = 0; ix < m_nx; ix++) { + for (iy = 0; iy < m_ny; iy++) { + vRealResult[ix][iy] = in[iArray][0] / iScale; + vImagResult[ix][iy] = in[iArray][1] / iScale; + iArray++; + } + } + fftw_free(in); + fftw_destroy_plan (plan); + + Fourier::shuffleFourierToNaturalOrder (result); + + return true; } @@ -782,162 +773,366 @@ ImageFile::ifft (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + if (result.dataType() == Array2dFile::DATA_TYPE_REAL) { if (! result.convertRealToComplex ()) return false; } - + ImageFileArrayConst vReal = getArray(); ImageFileArrayConst vImag = getImaginaryArray(); ImageFileArray vRealResult = result.getArray(); ImageFileArray vImagResult = result.getImaginaryArray(); unsigned int ix, iy; - for (ix = 0; ix < m_nx; ix++) + for (ix = 0; ix < m_nx; ix++) { for (iy = 0; iy < m_ny; iy++) { vRealResult[ix][iy] = vReal[ix][iy]; - if (isComplex()) + if (isComplex()) vImagResult[ix][iy] = vImag[ix][iy]; else vImagResult[ix][iy] = 0; } - - Fourier::shuffleNaturalToFourierOrder (result); - - fftw_complex* in = new fftw_complex [m_nx * m_ny]; - - unsigned int iArray = 0; - for (ix = 0; ix < m_nx; ix++) - for (iy = 0; iy < m_ny; iy++) { - in[iArray].re = vRealResult[ix][iy]; - in[iArray].im = vImagResult[ix][iy]; - iArray++; - } - - fftwnd_plan plan = fftw2d_create_plan (m_nx, m_ny, FFTW_BACKWARD, FFTW_IN_PLACE); - - fftwnd_one (plan, in, NULL); - - iArray = 0; - for (ix = 0; ix < m_nx; ix++) - for (iy = 0; iy < m_ny; iy++) { - vRealResult[ix][iy] = in[iArray].re; - vImagResult[ix][iy] = in[iArray].im; - iArray++; - } - - fftwnd_destroy_plan (plan); - - delete in; - - return true; -} -#endif // HAVE_FFTW + } + + Fourier::shuffleNaturalToFourierOrder (result); + + fftw_complex* in = static_cast(fftw_malloc(sizeof(fftw_complex) * m_nx * m_ny)); + + unsigned int iArray = 0; + for (ix = 0; ix < m_nx; ix++) { + for (iy = 0; iy < m_ny; iy++) { + in[iArray][0] = vRealResult[ix][iy]; + in[iArray][1] = vImagResult[ix][iy]; + iArray++; + } + } + + fftw_plan plan = fftw_plan_dft_2d (m_nx, m_ny, in, in, FFTW_BACKWARD, FFTW_ESTIMATE); + fftw_execute (plan); + + iArray = 0; + for (ix = 0; ix < m_nx; ix++) { + for (iy = 0; iy < m_ny; iy++) { + vRealResult[ix][iy] = in[iArray][0]; + vImagResult[ix][iy] = in[iArray][1]; + iArray++; + } + } + fftw_destroy_plan (plan); + fftw_free(in); + return true; +} bool -ImageFile::fourier (ImageFile& result) const +ImageFile::fftRows (ImageFile& result) const { if (m_nx != result.nx() || m_ny != result.ny()) { - sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::fftRows]"); return false; } - - if (! result.isComplex()) + + if (result.dataType() == Array2dFile::DATA_TYPE_REAL) { if (! result.convertRealToComplex ()) return false; - - ImageFileArrayConst vLHS = getArray(); - ImageFileArrayConst vLHSImag = getImaginaryArray(); - ImageFileArray vRealResult = result.getArray(); - ImageFileArray vImagResult = result.getImaginaryArray(); - - unsigned int ix, iy; - - // alloc output matrix - CTSimComplex** complexOut = new CTSimComplex* [m_nx]; - for (ix = 0; ix < m_nx; ix++) - complexOut[ix] = new CTSimComplex [m_ny]; - - // fourier each x column - CTSimComplex* pY = new CTSimComplex [m_ny]; + } + + ImageFileArrayConst vReal = getArray(); + ImageFileArrayConst vImag = getImaginaryArray(); + + fftw_complex* in = static_cast(fftw_malloc(sizeof(fftw_complex) * m_nx)); + fftw_plan plan = fftw_plan_dft_1d (m_nx, in, in, FFTW_FORWARD, FFTW_ESTIMATE); + + std::complex* pcRow = new std::complex [m_nx]; + for (unsigned int iy = 0; iy < m_ny; iy++) { + unsigned int ix; for (ix = 0; ix < m_nx; ix++) { - for (iy = 0; iy < m_ny; iy++) { - double dImag = 0; - if (isComplex()) - dImag = vLHSImag[ix][iy]; - pY[iy] = std::complex(vLHS[ix][iy], dImag); - } - ProcessSignal::finiteFourierTransform (pY, complexOut[ix], m_ny, ProcessSignal::FORWARD); - } - delete [] pY; - - // fourier each y row - CTSimComplex* pX = new CTSimComplex [m_nx]; - CTSimComplex* complexOutRow = new CTSimComplex [m_nx]; - for (iy = 0; iy < m_ny; iy++) { - for (ix = 0; ix < m_nx; ix++) - pX[ix] = complexOut[ix][iy]; - ProcessSignal::finiteFourierTransform (pX, complexOutRow, m_nx, ProcessSignal::FORWARD); - for (ix = 0; ix < m_nx; ix++) - complexOut[ix][iy] = complexOutRow[ix]; + in[ix][0] = vReal[ix][iy]; + if (isComplex()) + in[ix][1] = vImag[ix][iy]; + else + in[ix][1] = 0; } - delete [] pX; - delete [] complexOutRow; - + + fftw_execute (plan); + for (ix = 0; ix < m_nx; ix++) - for (iy = 0; iy < m_ny; iy++) { - vRealResult[ix][iy] = complexOut[ix][iy].real(); - vImagResult[ix][iy] = complexOut[ix][iy].imag(); - } - - Fourier::shuffleFourierToNaturalOrder (result); - - // delete complexOut matrix - for (ix = 0; ix < m_nx; ix++) - delete [] complexOut[ix]; - delete [] complexOut; - - return true; + pcRow[ix] = std::complex(in[ix][0], in[ix][1]); + + Fourier::shuffleFourierToNaturalOrder (pcRow, m_nx); + for (ix = 0; ix < m_nx; ix++) { + vReal[ix][iy] = pcRow[ix].real() / m_nx; + vImag[ix][iy] = pcRow[ix].imag() / m_nx; + } + } + delete [] pcRow; + + fftw_destroy_plan (plan); + fftw_free(in); + + return true; } bool -ImageFile::inverseFourier (ImageFile& result) const +ImageFile::ifftRows (ImageFile& result) const { if (m_nx != result.nx() || m_ny != result.ny()) { - sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::fftRows]"); return false; } - + if (result.dataType() == Array2dFile::DATA_TYPE_REAL) { if (! result.convertRealToComplex ()) return false; } - - ImageFileArrayConst vLHSReal = getArray(); - ImageFileArrayConst vLHSImag = getImaginaryArray(); - ImageFileArray vRealResult = result.getArray(); - ImageFileArray vImagResult = result.getImaginaryArray(); - + + ImageFileArrayConst vReal = getArray(); + ImageFileArrayConst vImag = getImaginaryArray(); + + fftw_complex* in = static_cast(fftw_malloc(sizeof(fftw_complex) * m_nx)); + fftw_plan plan = fftw_plan_dft_1d (m_nx, in, in, FFTW_BACKWARD, FFTW_ESTIMATE); + std::complex* pcRow = new std::complex [m_nx]; + unsigned int ix, iy; - // alloc 2d complex output matrix - CTSimComplex** complexOut = new CTSimComplex* [m_nx]; - for (ix = 0; ix < m_nx; ix++) - complexOut[ix] = new CTSimComplex [m_ny]; - - // put input image into result - for (ix = 0; ix < m_nx; ix++) - for (iy = 0; iy < m_ny; iy++) { - vRealResult[ix][iy] = vLHSReal[ix][iy]; + // unsigned int iArray = 0; + for (iy = 0; iy < m_ny; iy++) { + for (ix = 0; ix < m_nx; ix++) { + double dImag = 0; if (isComplex()) - vImagResult[ix][iy] = vLHSImag[ix][iy]; - else + dImag = vImag[ix][iy]; + pcRow[ix] = std::complex (vReal[ix][iy], dImag); + } + + Fourier::shuffleNaturalToFourierOrder (pcRow, m_nx); + + for (ix = 0; ix < m_nx; ix++) { + in[ix][0] = pcRow[ix].real(); + in[ix][1] = pcRow[ix].imag(); + } + + fftw_execute (plan); + + for (ix = 0; ix < m_nx; ix++) { + vReal[ix][iy] = in[ix][0]; + vImag[ix][iy] = in[ix][1]; + } + } + delete [] pcRow; + + fftw_destroy_plan (plan); + fftw_free(in); + + return true; +} + +bool +ImageFile::fftCols (ImageFile& result) const +{ + if (m_nx != result.nx() || m_ny != result.ny()) { + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::fftRows]"); + return false; + } + + if (result.dataType() == Array2dFile::DATA_TYPE_REAL) { + if (! result.convertRealToComplex ()) + return false; + } + + ImageFileArrayConst vReal = getArray(); + ImageFileArrayConst vImag = getImaginaryArray(); + + fftw_complex* in = static_cast(fftw_malloc(sizeof(fftw_complex) * m_ny)); + fftw_plan plan = fftw_plan_dft_1d (m_ny, in, in, FFTW_FORWARD, FFTW_ESTIMATE); + + std::complex* pcCol = new std::complex [m_ny]; + for (unsigned int ix = 0; ix < m_nx; ix++) { + unsigned int iy; + for (iy = 0; iy < m_ny; iy++) { + in[iy][0] = vReal[ix][iy]; + if (isComplex()) + in[iy][1] = vImag[ix][iy]; + else + in[iy][1] = 0; + } + + fftw_execute (plan); + + for (iy = 0; iy < m_ny; iy++) + pcCol[iy] = std::complex(in[iy][0], in[iy][1]); + + Fourier::shuffleFourierToNaturalOrder (pcCol, m_ny); + for (iy = 0; iy < m_ny; iy++) { + vReal[ix][iy] = pcCol[iy].real() / m_ny; + vImag[ix][iy] = pcCol[iy].imag() / m_ny; + } + } + delete [] pcCol; + + fftw_destroy_plan (plan); + fftw_free(in); + + return true; +} + +bool +ImageFile::ifftCols (ImageFile& result) const +{ + if (m_nx != result.nx() || m_ny != result.ny()) { + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::fftRows]"); + return false; + } + + if (result.dataType() == Array2dFile::DATA_TYPE_REAL) { + if (! result.convertRealToComplex ()) + return false; + } + + ImageFileArrayConst vReal = getArray(); + ImageFileArrayConst vImag = getImaginaryArray(); + + fftw_complex* in = static_cast(fftw_malloc(sizeof(fftw_complex) * m_ny)); + fftw_plan plan = fftw_plan_dft_1d (m_ny, in, in, FFTW_BACKWARD, FFTW_ESTIMATE); + std::complex* pcCol = new std::complex [m_ny]; + + unsigned int ix, iy; + // unsigned int iArray = 0; + for (ix = 0; ix < m_nx; ix++) { + for (iy = 0; iy < m_ny; iy++) { + double dImag = 0; + if (isComplex()) + dImag = vImag[ix][iy]; + pcCol[iy] = std::complex (vReal[ix][iy], dImag); + } + + Fourier::shuffleNaturalToFourierOrder (pcCol, m_ny); + + for (iy = 0; iy < m_ny; iy++) { + in[iy][0] = pcCol[iy].real(); + in[iy][1] = pcCol[iy].imag(); + } + + fftw_execute (plan); + + for (iy = 0; iy < m_ny; iy++) { + vReal[ix][iy] = in[iy][0]; + vImag[ix][iy] = in[iy][1]; + } + } + delete [] pcCol; + + fftw_destroy_plan (plan); + fftw_free(in); + + return true; +} + +#endif // HAVE_FFTW + + + +bool +ImageFile::fourier (ImageFile& result) const +{ + if (m_nx != result.nx() || m_ny != result.ny()) { + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); + return false; + } + + if (! result.isComplex()) + if (! result.convertRealToComplex ()) + return false; + + ImageFileArrayConst vLHS = getArray(); + ImageFileArrayConst vLHSImag = getImaginaryArray(); + ImageFileArray vRealResult = result.getArray(); + ImageFileArray vImagResult = result.getImaginaryArray(); + + unsigned int ix, iy; + + // alloc output matrix + CTSimComplex** complexOut = new CTSimComplex* [m_nx]; + for (ix = 0; ix < m_nx; ix++) + complexOut[ix] = new CTSimComplex [m_ny]; + + // fourier each x column + CTSimComplex* pY = new CTSimComplex [m_ny]; + for (ix = 0; ix < m_nx; ix++) { + for (iy = 0; iy < m_ny; iy++) { + double dImag = 0; + if (isComplex()) + dImag = vLHSImag[ix][iy]; + pY[iy] = std::complex(vLHS[ix][iy], dImag); + } + ProcessSignal::finiteFourierTransform (pY, complexOut[ix], m_ny, ProcessSignal::FORWARD); + } + delete [] pY; + + // fourier each y row + CTSimComplex* pX = new CTSimComplex [m_nx]; + CTSimComplex* complexOutRow = new CTSimComplex [m_nx]; + for (iy = 0; iy < m_ny; iy++) { + for (ix = 0; ix < m_nx; ix++) + pX[ix] = complexOut[ix][iy]; + ProcessSignal::finiteFourierTransform (pX, complexOutRow, m_nx, ProcessSignal::FORWARD); + for (ix = 0; ix < m_nx; ix++) + complexOut[ix][iy] = complexOutRow[ix]; + } + delete [] pX; + delete [] complexOutRow; + + for (ix = 0; ix < m_nx; ix++) + for (iy = 0; iy < m_ny; iy++) { + vRealResult[ix][iy] = complexOut[ix][iy].real(); + vImagResult[ix][iy] = complexOut[ix][iy].imag(); + } + + Fourier::shuffleFourierToNaturalOrder (result); + + // delete complexOut matrix + for (ix = 0; ix < m_nx; ix++) + delete [] complexOut[ix]; + delete [] complexOut; + + return true; +} + +bool +ImageFile::inverseFourier (ImageFile& result) const +{ + if (m_nx != result.nx() || m_ny != result.ny()) { + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); + return false; + } + + if (result.dataType() == Array2dFile::DATA_TYPE_REAL) { + if (! result.convertRealToComplex ()) + return false; + } + + ImageFileArrayConst vLHSReal = getArray(); + ImageFileArrayConst vLHSImag = getImaginaryArray(); + ImageFileArray vRealResult = result.getArray(); + ImageFileArray vImagResult = result.getImaginaryArray(); + + unsigned int ix, iy; + // alloc 2d complex output matrix + CTSimComplex** complexOut = new CTSimComplex* [m_nx]; + for (ix = 0; ix < m_nx; ix++) + complexOut[ix] = new CTSimComplex [m_ny]; + + // put input image into result + for (ix = 0; ix < m_nx; ix++) + for (iy = 0; iy < m_ny; iy++) { + vRealResult[ix][iy] = vLHSReal[ix][iy]; + if (isComplex()) + vImagResult[ix][iy] = vLHSImag[ix][iy]; + else vImagResult[ix][iy] = 0; } - + Fourier::shuffleNaturalToFourierOrder (result); - + // ifourier each x column CTSimComplex* pCol = new CTSimComplex [m_ny]; for (ix = 0; ix < m_nx; ix++) { @@ -947,7 +1142,7 @@ ImageFile::inverseFourier (ImageFile& result) const ProcessSignal::finiteFourierTransform (pCol, complexOut[ix], m_ny, ProcessSignal::BACKWARD); } delete [] pCol; - + // ifourier each y row CTSimComplex* complexInRow = new CTSimComplex [m_nx]; CTSimComplex* complexOutRow = new CTSimComplex [m_nx]; @@ -960,18 +1155,18 @@ ImageFile::inverseFourier (ImageFile& result) const } delete [] complexInRow; delete [] complexOutRow; - + for (ix = 0; ix < m_nx; ix++) for (iy = 0; iy < m_ny; iy++) { vRealResult[ix][iy] = complexOut[ix][iy].real(); vImagResult[ix][iy] = complexOut[ix][iy].imag(); } - + // delete complexOut matrix for (ix = 0; ix < m_nx; ix++) delete [] complexOut[ix]; delete [] complexOut; - + return true; } @@ -983,22 +1178,22 @@ ImageFile::magnitude (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + ImageFileArray vReal = getArray(); ImageFileArray vImag = getImaginaryArray(); ImageFileArray vRealResult = result.getArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) for (unsigned int iy = 0; iy < m_ny; iy++) { - if (isComplex()) + if (isComplex()) vRealResult[ix][iy] = ::sqrt (vReal[ix][iy] * vReal[ix][iy] + vImag[ix][iy] * vImag[ix][iy]); else - vRealResult[ix][iy] = vReal[ix][iy]; + vRealResult[ix][iy] = ::fabs(vReal[ix][iy]); } - + if (result.isComplex()) - result.convertComplexToReal(); - + result.reallocComplexToReal(); + return true; } @@ -1009,23 +1204,72 @@ ImageFile::phase (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + ImageFileArray vReal = getArray(); ImageFileArray vImag = getImaginaryArray(); ImageFileArray vRealResult = result.getArray(); - - for (unsigned int ix = 0; ix < m_nx; ix++) + + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { if (isComplex()) vRealResult[ix][iy] = ::atan2 (vImag[ix][iy], vReal[ix][iy]); else vRealResult[ix][iy] = 0; } - - if (result.isComplex()) - result.convertComplexToReal(); - - return true; + } + if (result.isComplex()) + result.reallocComplexToReal(); + + return true; +} + +bool +ImageFile::real (ImageFile& result) const +{ + if (m_nx != result.nx() || m_ny != result.ny()) { + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); + return false; + } + + ImageFileArray vReal = getArray(); + ImageFileArray vRealResult = result.getArray(); + + for (unsigned int ix = 0; ix < m_nx; ix++) { + for (unsigned int iy = 0; iy < m_ny; iy++) { + vRealResult[ix][iy] = vReal[ix][iy]; + } + } + + if (result.isComplex()) + result.reallocComplexToReal(); + + return true; +} + +bool +ImageFile::imaginary (ImageFile& result) const +{ + if (m_nx != result.nx() || m_ny != result.ny()) { + sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); + return false; + } + + ImageFileArray vImag = getArray(); + ImageFileArray vRealResult = result.getArray(); + + for (unsigned int ix = 0; ix < m_nx; ix++) { + for (unsigned int iy = 0; iy < m_ny; iy++) { + if (isComplex()) + vRealResult[ix][iy] = vImag[ix][iy]; + else + vRealResult[ix][iy] = 0; + } + } + + if (result.isComplex()) + result.reallocComplexToReal(); + + return true; } bool @@ -1035,15 +1279,15 @@ ImageFile::square (ImageFile& result) const sys_error (ERR_WARNING, "Difference sizes of images [ImageFile::invertPixelValues]"); return false; } - + if (isComplex() && ! result.isComplex()) result.convertRealToComplex(); - + ImageFileArrayConst vLHS = getArray(); ImageFileArrayConst vLHSImag = getImaginaryArray(); ImageFileArray vResult = result.getArray(); ImageFileArray vResultImag = result.getImaginaryArray(); - + for (unsigned int ix = 0; ix < m_nx; ix++) { for (unsigned int iy = 0; iy < m_ny; iy++) { if (result.isComplex()) { @@ -1058,69 +1302,385 @@ ImageFile::square (ImageFile& result) const vResult[ix][iy] = vLHS[ix][iy] * vLHS[ix][iy]; } } - - + return true; } int -ImageFile::convertFormatNameToID (const char* const formatName) +ImageFile::convertExportFormatNameToID (const char* const formatName) { - int formatID = FORMAT_INVALID; - - for (int i = 0; i < s_iFormatCount; i++) - if (strcasecmp (formatName, s_aszFormatName[i]) == 0) { + int formatID = EXPORT_FORMAT_INVALID; + + for (int i = 0; i < s_iExportFormatCount; i++) + if (strcasecmp (formatName, s_aszExportFormatName[i]) == 0) { formatID = i; break; } - + return (formatID); } const char* -ImageFile::convertFormatIDToName (int formatID) +ImageFile::convertExportFormatIDToName (int formatID) { static const char *formatName = ""; - - if (formatID >= 0 && formatID < s_iFormatCount) - return (s_aszFormatName[formatID]); - + + if (formatID >= 0 && formatID < s_iExportFormatCount) + return (s_aszExportFormatName[formatID]); + return (formatName); } const char* -ImageFile::convertFormatIDToTitle (const int formatID) +ImageFile::convertExportFormatIDToTitle (const int formatID) { static const char *formatTitle = ""; - - if (formatID >= 0 && formatID < s_iFormatCount) - return (s_aszFormatTitle[formatID]); - + + if (formatID >= 0 && formatID < s_iExportFormatCount) + return (s_aszExportFormatTitle[formatID]); + + return (formatTitle); +} + +int +ImageFile::convertImportFormatNameToID (const char* const formatName) +{ + int formatID = IMPORT_FORMAT_INVALID; + + for (int i = 0; i < s_iImportFormatCount; i++) + if (strcasecmp (formatName, s_aszImportFormatName[i]) == 0) { + formatID = i; + break; + } + + return (formatID); +} + +const char* +ImageFile::convertImportFormatIDToName (int formatID) +{ + static const char *formatName = ""; + + if (formatID >= 0 && formatID < s_iImportFormatCount) + return (s_aszImportFormatName[formatID]); + + return (formatName); +} + +const char* +ImageFile::convertImportFormatIDToTitle (const int formatID) +{ + static const char *formatTitle = ""; + + if (formatID >= 0 && formatID < s_iImportFormatCount) + return (s_aszImportFormatTitle[formatID]); + return (formatTitle); } bool -ImageFile::exportImage (const char* const pszFormat, const char* const pszFilename, int nxcell, int nycell, double densmin, double densmax) +ImageFile::importImage (const char* const pszFormat, const char* const pszFilename) { - int iFormatID = convertFormatNameToID (pszFormat); - if (iFormatID == FORMAT_INVALID) { - sys_error (ERR_SEVERE, "Invalid format %s [ImageFile::exportImage]", pszFormat); + int iFormatID = convertImportFormatNameToID (pszFormat); + + if (iFormatID == IMPORT_FORMAT_PPM) + return readImagePPM (pszFilename); +#ifdef HAVE_PNG + else if (iFormatID == IMPORT_FORMAT_PNG) + return readImagePNG (pszFilename); +#endif + + sys_error (ERR_SEVERE, "Invalid format %s [ImageFile::importImage]", pszFormat); + return false; +} + +void +ImageFile::skipSpacePPM (FILE* fp) +{ + int c = fgetc (fp); + while (isspace (c) || c == '#') { + if (c == '#') { // comment until end of line + c = fgetc(fp); + while (c != 13 && c != 10) + c = fgetc(fp); + } + else + c = fgetc(fp); + } + + ungetc (c, fp); +} + +bool +ImageFile::readImagePPM (const char* const pszFile) +{ + FILE* fp = fopen (pszFile, "r"); + if ((fp = fopen (pszFile, "r")) == NULL) + return false; + char cSignature = toupper(fgetc(fp)); + if (cSignature != 'P') { + fclose(fp); + return false; + } + cSignature = fgetc(fp); + if (cSignature == '5' || cSignature == '6') { // binary modes + fclose(fp); + fp = fopen(pszFile, "rb"); // reopen in binary mode + fgetc(fp); + fgetc(fp); + } else if (cSignature != '2' && cSignature != '3') { + fclose(fp); + return false; + } + + int nRows, nCols, iMaxValue; + skipSpacePPM (fp); + if (fscanf (fp, "%d", &nCols) != 1) { + fclose(fp); + return false; + } + skipSpacePPM (fp); + if (fscanf (fp, "%d", &nRows) != 1) { + fclose(fp); + return false; + } + skipSpacePPM (fp); + if (fscanf (fp, "%d", &iMaxValue) != 1) { + fclose(fp); + return false; + } + setArraySize (nRows, nCols); + + if (cSignature == '5' || cSignature == '6') { // binary modes + int c = fgetc(fp); + if (c == 13) { + c = fgetc(fp); + if (c != 10) // read msdos 13-10 newline + ungetc(c, fp); + } + } else + skipSpacePPM (fp); // ascii may have comments + + bool bMonochromeImage = false; + double dMaxValue = iMaxValue; + double dMaxValue3 = iMaxValue * 3; + + ImageFileArray v = getArray(); + for (int iy = nRows - 1; iy >= 0; iy--) { + for (int ix = 0; ix < nCols; ix++) { + int iGS, iR, iG, iB; + double dR, dG, dB; + switch (cSignature) { + case '2': + if (fscanf(fp, "%d ", &iGS) != 1) { + fclose(fp); + return false; + } + v[ix][iy] = iGS / dMaxValue; + break; + case '5': + iGS = fgetc(fp); + if (iGS == EOF) { + fclose(fp); + return false; + } + v[ix][iy] = iGS / dMaxValue; + break; + case '3': + if (fscanf (fp, "%d %d %d ", &iR, &iG, &iB) != 3) { + fclose(fp); + return false; + } + if (ix == 0 && iy == 0 && (iR == iG && iG == iB)) + bMonochromeImage = true; + if (bMonochromeImage) + v[ix][iy] = (iR + iG + iB) / dMaxValue3; + else { + dR = iR / dMaxValue; + dG = iG / dMaxValue; + dB = iB / dMaxValue; + v[ix][iy] = colorToGrayscale (dR, dG, dB); + } + break; + case '6': + iR = fgetc(fp); + iG = fgetc(fp); + iB = fgetc(fp); + + if (iB == EOF) { + fclose(fp); + return false; + } + if (ix == 0 && iy == 0 && (iR == iG && iG == iB)) + bMonochromeImage = true; + + if (bMonochromeImage) + v[ix][iy] = (iR + iG + iB) / dMaxValue3; + else { + dR = iR / dMaxValue; + dG = iG / dMaxValue; + dB = iB / dMaxValue; + v[ix][iy] = colorToGrayscale (dR, dG, dB); + } + break; + } + } + } + + fclose(fp); + return true; +} + +#ifdef HAVE_PNG +bool +ImageFile::readImagePNG (const char* const pszFile) +{ + FILE* fp = fopen(pszFile, "rb"); + if (!fp) + return false; + unsigned char header[8]; + fread (header, 1, 8, fp); + if (png_sig_cmp (header, 0, 8)) { + fclose (fp); + return false; + } + + png_structp png_ptr = png_create_read_struct (PNG_LIBPNG_VER_STRING, NULL, NULL, NULL); + if (!png_ptr) { + fclose(fp); + return false; + } + + png_infop info_ptr = png_create_info_struct(png_ptr); + if (!info_ptr) { + png_destroy_read_struct(&png_ptr, (png_infopp)NULL, (png_infopp)NULL); + fclose(fp); return false; } - - if (iFormatID == FORMAT_PGM) + + png_infop end_info = png_create_info_struct(png_ptr); + if (!end_info) { + png_destroy_read_struct(&png_ptr, &info_ptr, (png_infopp)NULL); + fclose(fp); + return false; + } + + if (setjmp(png_ptr->jmpbuf)) { + png_destroy_read_struct(&png_ptr, &info_ptr, &end_info); + fclose(fp); + return false; + } + + png_init_io(png_ptr, fp); + png_set_sig_bytes(png_ptr, 8); + png_read_info(png_ptr, info_ptr); + + int width = png_get_image_width (png_ptr, info_ptr); + int height = png_get_image_height (png_ptr, info_ptr); + int bit_depth = png_get_bit_depth (png_ptr, info_ptr); + int color_type = png_get_color_type (png_ptr, info_ptr); + + if (color_type == PNG_COLOR_TYPE_PALETTE && bit_depth <= 8) + png_set_expand(png_ptr); + + if (color_type == PNG_COLOR_TYPE_GRAY && bit_depth < 8) + png_set_expand(png_ptr); + + if (bit_depth < 8) + png_set_packing(png_ptr); + + if (color_type & PNG_COLOR_MASK_ALPHA) + png_set_strip_alpha(png_ptr); + + if (bit_depth == 16) + png_set_swap(png_ptr); // convert to little-endian format + + png_read_update_info(png_ptr, info_ptr); // update with transformations + int rowbytes = png_get_rowbytes (png_ptr, info_ptr); + bit_depth = png_get_bit_depth (png_ptr, info_ptr); + color_type = png_get_color_type (png_ptr, info_ptr); + + png_bytep* row_pointers = new png_bytep [height]; + int i; + for (i = 0; i < height; i++) + row_pointers[i] = new unsigned char [rowbytes]; + + png_read_image(png_ptr, row_pointers); + + setArraySize (width, height); + ImageFileArray v = getArray(); + for (int iy = 0; iy < height; iy++) { + for (int ix = 0; ix < width; ix++) { + double dV = 0; + if (color_type == PNG_COLOR_TYPE_GRAY) { + if (bit_depth == 8) + dV = row_pointers[iy][ix] / 255.; + else if (bit_depth == 16) { + int iBase = ix * 2; + dV = (row_pointers[iy][iBase] + (row_pointers[iy][iBase+1] << 8)) / 65536.; + } else + dV = 0; + } else if (color_type == PNG_COLOR_TYPE_RGB) { + if (bit_depth == 8) { + int iBase = ix * 3; + double dR = row_pointers[iy][iBase] / 255.; + double dG = row_pointers[iy][iBase+1] / 255.; + double dB = row_pointers[iy][iBase+2] / 255.; + dV = colorToGrayscale (dR, dG, dB); + } else + dV = 0; + } + v[ix][height-iy-1] = dV; + } + } + + png_read_end(png_ptr, end_info); + png_destroy_read_struct(&png_ptr, &info_ptr, &end_info); + + for (i = 0; i < height; i++) + delete row_pointers[i]; + delete row_pointers; + + fclose (fp); + return true; +} +#endif + +bool +ImageFile::exportImage (const char* const pszFormat, const char* const pszFilename, int nxcell, int nycell, double densmin, double densmax) +{ + int iFormatID = convertExportFormatNameToID (pszFormat); + + if (iFormatID == EXPORT_FORMAT_PGM) return writeImagePGM (pszFilename, nxcell, nycell, densmin, densmax); - else if (iFormatID == FORMAT_PGMASCII) + else if (iFormatID == EXPORT_FORMAT_PGMASCII) return writeImagePGMASCII (pszFilename, nxcell, nycell, densmin, densmax); - else if (iFormatID == FORMAT_PNG) + else if (iFormatID == EXPORT_FORMAT_TEXT) + return writeImageText (pszFilename); +#ifdef HAVE_PNG + else if (iFormatID == EXPORT_FORMAT_PNG) return writeImagePNG (pszFilename, 8, nxcell, nycell, densmin, densmax); - else if (iFormatID == FORMAT_PNG16) + else if (iFormatID == EXPORT_FORMAT_PNG16) return writeImagePNG (pszFilename, 16, nxcell, nycell, densmin, densmax); - +#endif +#ifdef HAVE_CTN_DICOM + else if (iFormatID == EXPORT_FORMAT_DICOM) { + DicomExporter dicomExport (this); + bool bSuccess = dicomExport.writeFile (pszFilename); + if (! bSuccess) + sys_error (ERR_SEVERE, dicomExport.failMessage().c_str()); + return bSuccess; + } +#endif + else if (iFormatID == EXPORT_FORMAT_RAW) + return writeImageRaw(pszFilename, nxcell, nycell); + + sys_error (ERR_SEVERE, "Invalid format %s [ImageFile::exportImage]", pszFormat); return false; } + bool ImageFile::writeImagePGM (const char* const outfile, int nxcell, int nycell, double densmin, double densmax) { @@ -1128,16 +1688,16 @@ ImageFile::writeImagePGM (const char* const outfile, int nxcell, int nycell, dou int nx = m_nx; int ny = m_ny; ImageFileArray v = getArray(); - + unsigned char* rowp = new unsigned char [nx * nxcell]; - + if ((fp = fopen (outfile, "wb")) == NULL) return false; - + fprintf(fp, "P5\n"); fprintf(fp, "%d %d\n", nx, ny); fprintf(fp, "255\n"); - + for (int irow = ny - 1; irow >= 0; irow--) { for (int icol = 0; icol < nx; icol++) { int pos = icol * nxcell; @@ -1148,14 +1708,14 @@ ImageFile::writeImagePGM (const char* const outfile, int nxcell, int nycell, dou } } for (int ir = 0; ir < nycell; ir++) { - for (int ic = 0; ic < nx * nxcell; ic++) + for (int ic = 0; ic < nx * nxcell; ic++) fputc( rowp[ic], fp ); } } - + delete rowp; fclose(fp); - + return true; } @@ -1166,16 +1726,16 @@ ImageFile::writeImagePGMASCII (const char* const outfile, int nxcell, int nycell int nx = m_nx; int ny = m_ny; ImageFileArray v = getArray(); - + unsigned char* rowp = new unsigned char [nx * nxcell]; - + if ((fp = fopen (outfile, "wb")) == NULL) return false; - + fprintf(fp, "P2\n"); fprintf(fp, "%d %d\n", nx, ny); fprintf(fp, "255\n"); - + for (int irow = ny - 1; irow >= 0; irow--) { for (int icol = 0; icol < nx; icol++) { int pos = icol * nxcell; @@ -1186,15 +1746,45 @@ ImageFile::writeImagePGMASCII (const char* const outfile, int nxcell, int nycell } } for (int ir = 0; ir < nycell; ir++) { - for (int ic = 0; ic < nx * nxcell; ic++) + for (int ic = 0; ic < nx * nxcell; ic++) fprintf(fp, "%d ", rowp[ic]); fprintf(fp, "\n"); } } - + delete rowp; fclose(fp); - + + return true; +} + +bool +ImageFile::writeImageText (const char* const outfile) +{ + FILE *fp; + int nx = m_nx; + int ny = m_ny; + ImageFileArray v = getArray(); + ImageFileArray vImag = getImaginaryArray(); + + if ((fp = fopen (outfile, "w")) == NULL) + return false; + + for (int irow = ny - 1; irow >= 0; irow--) { + for (int icol = 0; icol < nx; icol++) { + if (isComplex()) { + if (vImag[icol][irow] >= 0) + fprintf (fp, "%.9g+%.9gi ", v[icol][irow], vImag[icol][irow]); + else + fprintf (fp, "%.9g-%.9gi ", v[icol][irow], -vImag[icol][irow]); + } else + fprintf (fp, "%12.8g ", v[icol][irow]); + } + fprintf(fp, "\n"); + } + + fclose(fp); + return true; } @@ -1207,44 +1797,44 @@ ImageFile::writeImagePNG (const char* const outfile, int bitdepth, int nxcell, i int nx = m_nx; int ny = m_ny; ImageFileArray v = getArray(); - + unsigned char* rowp = new unsigned char [nx * nxcell * (bitdepth / 8)]; - + FILE *fp = fopen (outfile, "wb"); if (! fp) return false; - + png_structp png_ptr = png_create_write_struct (PNG_LIBPNG_VER_STRING, NULL, NULL, NULL); if (! png_ptr) return false; - + png_infop info_ptr = png_create_info_struct (png_ptr); if (! info_ptr) { png_destroy_write_struct (&png_ptr, (png_infopp) NULL); fclose (fp); return false; } - + if (setjmp (png_ptr->jmpbuf)) { png_destroy_write_struct (&png_ptr, &info_ptr); fclose (fp); return false; } - + png_init_io(png_ptr, fp); - - png_set_IHDR (png_ptr, info_ptr, nx * nxcell, ny * nycell, bitdepth, PNG_COLOR_TYPE_GRAY, PNG_INTERLACE_NONE, PNG_COMPRESSION_TYPE_BASE, PNG_FILTER_TYPE_DEFAULT); - + + png_set_IHDR (png_ptr, info_ptr, nx * nxcell, ny * nycell, bitdepth, PNG_COLOR_TYPE_GRAY, PNG_INTERLACE_NONE, PNG_COMPRESSION_TYPE_DEFAULT, PNG_FILTER_TYPE_DEFAULT); + png_write_info(png_ptr, info_ptr); for (int irow = ny - 1; irow >= 0; irow--) { png_bytep row_pointer = rowp; - + for (int icol = 0; icol < nx; icol++) { int pos = icol * nxcell; double dens = (v[icol][irow] - densmin) / (densmax - densmin); dens = clamp (dens, 0., 1.); unsigned int outval = static_cast (dens * max_out_level); - + for (int p = pos; p < pos + nxcell; p++) { if (bitdepth == 8) rowp[p] = outval; @@ -1258,13 +1848,13 @@ ImageFile::writeImagePNG (const char* const outfile, int bitdepth, int nxcell, i for (int ir = 0; ir < nycell; ir++) png_write_rows (png_ptr, &row_pointer, 1); } - + png_write_end (png_ptr, info_ptr); png_destroy_write_struct (&png_ptr, &info_ptr); delete rowp; - + fclose(fp); - + return true; } #endif @@ -1280,13 +1870,13 @@ ImageFile::writeImageGIF (const char* const outfile, int nxcell, int nycell, dou int nx = m_nx; int ny = m_ny; ImageFileArray v = getArray(); - + unsigned char* rowp = new unsigned char [nx * nxcell]; - + gdImagePtr gif = gdImageCreate(nx * nxcell, ny * nycell); for (int i = 0; i < N_GRAYSCALE; i++) gs_indices[i] = gdImageColorAllocate(gif, i, i, i); - + int lastrow = ny * nycell - 1; for (int irow = 0; irow < ny; irow++) { int rpos = irow * nycell; @@ -1302,19 +1892,42 @@ ImageFile::writeImageGIF (const char* const outfile, int nxcell, int nycell, dou } } } - + FILE *out; if ((out = fopen (outfile,"w")) == NULL) { - sys_error(ERR_FATAL, "Error opening output file %s for writing", outfile); + sys_error(ERR_SEVERE, "Error opening output file %s for writing", outfile); return false; } gdImageGif(gif,out); fclose(out); gdImageDestroy(gif); - + delete rowp; - + return true; } #endif +bool +ImageFile::writeImageRaw (const char* const outfile, int nxcell, int nycell) +{ + FILE *fp; + int nx = m_nx; + int ny = m_ny; + ImageFileArray v = getArray(); + + if ((fp = fopen (outfile, "wb")) == NULL) + return false; + + for (int irow = ny - 1; irow >= 0; irow--) { + for (int icol = 0; icol < nx; icol++) { + float dens = v[icol][irow]; + fwrite(&dens, sizeof(float), 1, fp); + } + } + + fclose(fp); + return true; +} + +