From: Kevin M. Rosenberg <kevin@rosenberg.net>
Date: Sun, 28 Sep 2003 19:04:35 +0000 (+0000)
Subject: r7920: changes to compile on new automake and xfree_4.3.0_0pre1v1
X-Git-Tag: debian-4.5.3-3~66
X-Git-Url: http://git.kpe.io/?p=ctsim.git;a=commitdiff_plain;h=5de81048494731a2879f3145517af82722c98f83

r7920: changes to compile on new automake and xfree_4.3.0_0pre1v1
---

diff --git a/Makefile.in b/Makefile.in
index d317b9f..4d72d32 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -184,10 +184,10 @@ RECURSIVE_TARGETS = info-recursive dvi-recursive pdf-recursive \
 	all-recursive install-data-recursive install-exec-recursive \
 	installdirs-recursive install-recursive uninstall-recursive \
 	check-recursive installcheck-recursive
-DIST_COMMON = README AUTHORS COPYING ChangeLog INSTALL Makefile.am \
-	Makefile.in NEWS TODO aclocal.m4 config.guess config.h.in \
-	config.sub configure configure.ac depcomp install-sh missing \
-	mkinstalldirs
+DIST_COMMON = README $(srcdir)/Makefile.in $(srcdir)/configure AUTHORS \
+	COPYING ChangeLog INSTALL Makefile.am NEWS TODO aclocal.m4 \
+	config.guess config.h.in config.sub configure configure.ac \
+	depcomp install-sh missing mkinstalldirs
 DIST_SUBDIRS = man libctsupport libctsim html cgi-bin include getopt \
 	libctgraphics src tools helical
 all: config.h
@@ -309,9 +309,15 @@ TAGS: tags-recursive $(HEADERS) $(SOURCES) config.h.in $(TAGS_DEPENDENCIES) \
 		$(TAGS_FILES) $(LISP)
 	tags=; \
 	here=`pwd`; \
+	if (etags --etags-include --version) >/dev/null 2>&1; then \
+	  include_option=--etags-include; \
+	else \
+	  include_option=--include; \
+	fi; \
 	list='$(SUBDIRS)'; for subdir in $$list; do \
 	  if test "$$subdir" = .; then :; else \
-	    test -f $$subdir/TAGS && tags="$$tags -i $$here/$$subdir/TAGS"; \
+	    test -f $$subdir/TAGS && \
+	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
 	  fi; \
 	done; \
 	list='$(SOURCES) $(HEADERS) config.h.in $(LISP) $(TAGS_FILES)'; \
@@ -455,7 +461,7 @@ distcheck: dist
 	@echo "$(distdir).tar.gz is ready for distribution" | \
 	  sed 'h;s/./=/g;p;x;p;x'
 distuninstallcheck:
-	cd $(distuninstallcheck_dir) \
+	@cd $(distuninstallcheck_dir) \
 	&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
 	   || { echo "ERROR: files left after uninstall:" ; \
 	        if test -n "$(DESTDIR)"; then \
@@ -464,11 +470,11 @@ distuninstallcheck:
 	        $(distuninstallcheck_listfiles) ; \
 	        exit 1; } >&2
 distcleancheck: distclean
-	if test '$(srcdir)' = . ; then \
+	@if test '$(srcdir)' = . ; then \
 	  echo "ERROR: distcleancheck can only run from a VPATH build" ; \
 	  exit 1 ; \
 	fi
-	test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
+	@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
 	  || { echo "ERROR: files left in build directory after distclean:" ; \
 	       $(distcleancheck_listfiles) ; \
 	       exit 1; } >&2
@@ -497,7 +503,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -508,6 +514,8 @@ clean-am: clean-generic mostlyclean-am
 
 distclean: distclean-recursive
 	-rm -f $(am__CONFIG_DISTCLEAN_FILES)
+
+	-rm -f Makefile
 distclean-am: clean-am distclean-generic distclean-hdr distclean-tags
 
 dvi: dvi-recursive
@@ -530,7 +538,9 @@ installcheck-am:
 
 maintainer-clean: maintainer-clean-recursive
 	-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-	-rm -rf autom4te.cache
+	-rm -rf $(top_srcdir)/autom4te.cache
+
+	-rm -f Makefile
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
 mostlyclean: mostlyclean-recursive
diff --git a/aclocal.m4 b/aclocal.m4
index 17158c6..5bf46be 100644
--- a/aclocal.m4
+++ b/aclocal.m4
@@ -1,4 +1,4 @@
-# generated automatically by aclocal 1.7.3 -*- Autoconf -*-
+# generated automatically by aclocal 1.7.7 -*- Autoconf -*-
 
 # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002
 # Free Software Foundation, Inc.
@@ -99,7 +99,7 @@ fi])])
 # This macro actually does too much some checks are only needed if
 # your package does certain things.  But this isn't really a big deal.
 
-# Copyright 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
 # Free Software Foundation, Inc.
 
 # This program is free software; you can redistribute it and/or modify
@@ -117,14 +117,7 @@ fi])])
 # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
 # 02111-1307, USA.
 
-# serial 9
-
-# There are a few dirty hacks below to avoid letting `AC_PROG_CC' be
-# written in clear, in which case automake, when reading aclocal.m4,
-# will think it sees a *use*, and therefore will trigger all it's
-# C support machinery.  Also note that it means that autoscan, seeing
-# CC etc. in the Makefile, will ask for an AC_PROG_CC use...
-
+# serial 10
 
 AC_PREREQ([2.54])
 
@@ -253,7 +246,7 @@ AC_DEFUN([AM_AUTOMAKE_VERSION],[am__api_version="1.7"])
 # Call AM_AUTOMAKE_VERSION so it can be traced.
 # This function is AC_REQUIREd by AC_INIT_AUTOMAKE.
 AC_DEFUN([AM_SET_CURRENT_AUTOMAKE_VERSION],
-	 [AM_AUTOMAKE_VERSION([1.7.3])])
+	 [AM_AUTOMAKE_VERSION([1.7.7])])
 
 # Helper functions for option handling.                    -*- Autoconf -*-
 
@@ -635,18 +628,32 @@ AC_CACHE_CHECK([dependency style of $depcc],
   # using a relative directory.
   cp "$am_depcomp" conftest.dir
   cd conftest.dir
+  # We will build objects and dependencies in a subdirectory because
+  # it helps to detect inapplicable dependency modes.  For instance
+  # both Tru64's cc and ICC support -MD to output dependencies as a
+  # side effect of compilation, but ICC will put the dependencies in
+  # the current directory while Tru64 will put them in the object
+  # directory.
+  mkdir sub
 
   am_cv_$1_dependencies_compiler_type=none
   if test "$am_compiler_list" = ""; then
      am_compiler_list=`sed -n ['s/^#*\([a-zA-Z0-9]*\))$/\1/p'] < ./depcomp`
   fi
   for depmode in $am_compiler_list; do
+    # Setup a source with many dependencies, because some compilers
+    # like to wrap large dependency lists on column 80 (with \), and
+    # we should not choose a depcomp mode which is confused by this.
+    #
     # We need to recreate these files for each test, as the compiler may
     # overwrite some of them when testing with obscure command lines.
     # This happens at least with the AIX C compiler.
-    echo '#include "conftest.h"' > conftest.c
-    echo 'int i;' > conftest.h
-    echo "${am__include} ${am__quote}conftest.Po${am__quote}" > confmf
+    : > sub/conftest.c
+    for i in 1 2 3 4 5 6; do
+      echo '#include "conftst'$i'.h"' >> sub/conftest.c
+      : > sub/conftst$i.h
+    done
+    echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
 
     case $depmode in
     nosideeffect)
@@ -664,11 +671,12 @@ AC_CACHE_CHECK([dependency style of $depcc],
     # mode.  It turns out that the SunPro C++ compiler does not properly
     # handle `-M -o', and we need to detect this.
     if depmode=$depmode \
-       source=conftest.c object=conftest.o \
-       depfile=conftest.Po tmpdepfile=conftest.TPo \
-       $SHELL ./depcomp $depcc -c -o conftest.o conftest.c \
+       source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \
+       depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
+       $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \
          >/dev/null 2>conftest.err &&
-       grep conftest.h conftest.Po > /dev/null 2>&1 &&
+       grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
+       grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 &&
        ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
       # icc doesn't choke on unknown options, it will just issue warnings
       # (even with -Werror).  So we grep stderr for any message
@@ -803,7 +811,7 @@ AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS],
 
 # Check to see how 'make' treats includes.	-*- Autoconf -*-
 
-# Copyright (C) 2001, 2002 Free Software Foundation, Inc.
+# Copyright (C) 2001, 2002, 2003 Free Software Foundation, Inc.
 
 # This program is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -828,8 +836,9 @@ AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS],
 AC_DEFUN([AM_MAKE_INCLUDE],
 [am_make=${MAKE-make}
 cat > confinc << 'END'
-doit:
+am__doit:
 	@echo done
+.PHONY: am__doit
 END
 # If we don't find an include directive, just comment out the code.
 AC_MSG_CHECKING([for style of include used by $am_make])
@@ -857,9 +866,9 @@ if test "$am__include" = "#"; then
       _am_result=BSD
    fi
 fi
-AC_SUBST(am__include)
-AC_SUBST(am__quote)
-AC_MSG_RESULT($_am_result)
+AC_SUBST([am__include])
+AC_SUBST([am__quote])
+AC_MSG_RESULT([$_am_result])
 rm -f confinc confmf
 ])
 
diff --git a/cgi-bin/Makefile.in b/cgi-bin/Makefile.in
index 7cb4c52..ee9412a 100644
--- a/cgi-bin/Makefile.in
+++ b/cgi-bin/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -163,13 +163,15 @@ wxlibs = @wxlibs@
 cgibin_SCRIPTS = @cgiprograms@
 EXTRA_SCRIPTS = ctsim.cgi ctsim.conf
 subdir = cgi-bin
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES = ctsim.cgi ctsim.conf
 SCRIPTS = $(cgibin_SCRIPTS)
 
 DIST_SOURCES =
-DIST_COMMON = Makefile.am Makefile.in ctsim.cgi.in ctsim.conf.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am ctsim.cgi.in \
+	ctsim.conf.in
 all: all-am
 
 .SUFFIXES:
@@ -247,7 +249,6 @@ all-am: Makefile $(SCRIPTS)
 
 installdirs:
 	$(mkinstalldirs) $(DESTDIR)$(cgibindir)
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -267,7 +268,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -277,6 +278,7 @@ clean: clean-am
 clean-am: clean-generic mostlyclean-am
 
 distclean: distclean-am
+	-rm -f Makefile
 
 distclean-am: clean-am distclean-generic
 
@@ -299,6 +301,7 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
diff --git a/configure b/configure
index 881c7bf..fc903ac 100755
--- a/configure
+++ b/configure
@@ -954,7 +954,7 @@ ac_abs_top_srcdir=`cd "$ac_dir" && cd $ac_top_srcdir && pwd`
     else
       echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
     fi
-    cd $ac_popdir
+    cd "$ac_popdir"
   done
 fi
 
@@ -1151,7 +1151,7 @@ _ASBOX
       echo "$as_me: caught signal $ac_signal"
     echo "$as_me: exit $exit_status"
   } >&5
-  rm -f core core.* *.core &&
+  rm -f core *.core &&
   rm -rf conftest* confdefs* conf$$* $ac_clean_files &&
     exit $exit_status
      ' 0
@@ -1600,7 +1600,7 @@ fi
 
 # Define the identity of the package.
  PACKAGE=ctsim
- VERSION=4.2.3
+ VERSION=4.2.6
 
 
 cat >>confdefs.h <<_ACEOF
@@ -2724,8 +2724,7 @@ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
   echo "$as_me:$LINENO: \$? = $ac_status" >&5
   (exit $ac_status); }; }; then
   for ac_declaration in \
-   ''\
-   '#include <stdlib.h>' \
+   '' \
    'extern "C" void std::exit (int) throw (); using std::exit;' \
    'extern "C" void std::exit (int); using std::exit;' \
    'extern "C" void exit (int) throw ();' \
@@ -2739,8 +2738,8 @@ _ACEOF
 cat confdefs.h >>conftest.$ac_ext
 cat >>conftest.$ac_ext <<_ACEOF
 /* end confdefs.h.  */
-#include <stdlib.h>
 $ac_declaration
+#include <stdlib.h>
 int
 main ()
 {
@@ -2830,8 +2829,9 @@ DEPDIR="${am__leading_dot}deps"
 
 am_make=${MAKE-make}
 cat > confinc << 'END'
-doit:
+am__doit:
 	@echo done
+.PHONY: am__doit
 END
 # If we don't find an include directive, just comment out the code.
 echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5
@@ -2906,18 +2906,32 @@ else
   # using a relative directory.
   cp "$am_depcomp" conftest.dir
   cd conftest.dir
+  # We will build objects and dependencies in a subdirectory because
+  # it helps to detect inapplicable dependency modes.  For instance
+  # both Tru64's cc and ICC support -MD to output dependencies as a
+  # side effect of compilation, but ICC will put the dependencies in
+  # the current directory while Tru64 will put them in the object
+  # directory.
+  mkdir sub
 
   am_cv_CC_dependencies_compiler_type=none
   if test "$am_compiler_list" = ""; then
      am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
   fi
   for depmode in $am_compiler_list; do
+    # Setup a source with many dependencies, because some compilers
+    # like to wrap large dependency lists on column 80 (with \), and
+    # we should not choose a depcomp mode which is confused by this.
+    #
     # We need to recreate these files for each test, as the compiler may
     # overwrite some of them when testing with obscure command lines.
     # This happens at least with the AIX C compiler.
-    echo '#include "conftest.h"' > conftest.c
-    echo 'int i;' > conftest.h
-    echo "${am__include} ${am__quote}conftest.Po${am__quote}" > confmf
+    : > sub/conftest.c
+    for i in 1 2 3 4 5 6; do
+      echo '#include "conftst'$i'.h"' >> sub/conftest.c
+      : > sub/conftst$i.h
+    done
+    echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
 
     case $depmode in
     nosideeffect)
@@ -2935,11 +2949,12 @@ else
     # mode.  It turns out that the SunPro C++ compiler does not properly
     # handle `-M -o', and we need to detect this.
     if depmode=$depmode \
-       source=conftest.c object=conftest.o \
-       depfile=conftest.Po tmpdepfile=conftest.TPo \
-       $SHELL ./depcomp $depcc -c -o conftest.o conftest.c \
+       source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \
+       depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
+       $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \
          >/dev/null 2>conftest.err &&
-       grep conftest.h conftest.Po > /dev/null 2>&1 &&
+       grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
+       grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 &&
        ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
       # icc doesn't choke on unknown options, it will just issue warnings
       # (even with -Werror).  So we grep stderr for any message
@@ -3201,8 +3216,7 @@ else
   fi
 fi
 for ac_declaration in \
-   ''\
-   '#include <stdlib.h>' \
+   '' \
    'extern "C" void std::exit (int) throw (); using std::exit;' \
    'extern "C" void std::exit (int); using std::exit;' \
    'extern "C" void exit (int) throw ();' \
@@ -3216,8 +3230,8 @@ _ACEOF
 cat confdefs.h >>conftest.$ac_ext
 cat >>conftest.$ac_ext <<_ACEOF
 /* end confdefs.h.  */
-#include <stdlib.h>
 $ac_declaration
+#include <stdlib.h>
 int
 main ()
 {
@@ -3313,18 +3327,32 @@ else
   # using a relative directory.
   cp "$am_depcomp" conftest.dir
   cd conftest.dir
+  # We will build objects and dependencies in a subdirectory because
+  # it helps to detect inapplicable dependency modes.  For instance
+  # both Tru64's cc and ICC support -MD to output dependencies as a
+  # side effect of compilation, but ICC will put the dependencies in
+  # the current directory while Tru64 will put them in the object
+  # directory.
+  mkdir sub
 
   am_cv_CXX_dependencies_compiler_type=none
   if test "$am_compiler_list" = ""; then
      am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
   fi
   for depmode in $am_compiler_list; do
+    # Setup a source with many dependencies, because some compilers
+    # like to wrap large dependency lists on column 80 (with \), and
+    # we should not choose a depcomp mode which is confused by this.
+    #
     # We need to recreate these files for each test, as the compiler may
     # overwrite some of them when testing with obscure command lines.
     # This happens at least with the AIX C compiler.
-    echo '#include "conftest.h"' > conftest.c
-    echo 'int i;' > conftest.h
-    echo "${am__include} ${am__quote}conftest.Po${am__quote}" > confmf
+    : > sub/conftest.c
+    for i in 1 2 3 4 5 6; do
+      echo '#include "conftst'$i'.h"' >> sub/conftest.c
+      : > sub/conftst$i.h
+    done
+    echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
 
     case $depmode in
     nosideeffect)
@@ -3342,11 +3370,12 @@ else
     # mode.  It turns out that the SunPro C++ compiler does not properly
     # handle `-M -o', and we need to detect this.
     if depmode=$depmode \
-       source=conftest.c object=conftest.o \
-       depfile=conftest.Po tmpdepfile=conftest.TPo \
-       $SHELL ./depcomp $depcc -c -o conftest.o conftest.c \
+       source=sub/conftest.c object=sub/conftest.${OBJEXT-o} \
+       depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
+       $SHELL ./depcomp $depcc -c -o sub/conftest.${OBJEXT-o} sub/conftest.c \
          >/dev/null 2>conftest.err &&
-       grep conftest.h conftest.Po > /dev/null 2>&1 &&
+       grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
+       grep sub/conftest.${OBJEXT-o} sub/conftest.Po > /dev/null 2>&1 &&
        ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
       # icc doesn't choke on unknown options, it will just issue warnings
       # (even with -Werror).  So we grep stderr for any message
@@ -3563,7 +3592,7 @@ sed 's/^/| /' conftest.$ac_ext >&5
 ( exit $ac_status )
 ac_cv_c_bigendian=yes
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 rm -f conftest.$ac_objext conftest.$ac_ext
@@ -4136,7 +4165,7 @@ sed 's/^/| /' conftest.$ac_ext >&5
 ( exit $ac_status )
 ac_cv_header_stdc=no
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 fi
@@ -4559,7 +4588,7 @@ echo "$as_me: error: cannot compute sizeof (short), 77
 See \`config.log' for more details." >&2;}
    { (exit 1); exit 1; }; }
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 rm -f conftest.val
@@ -4920,7 +4949,7 @@ echo "$as_me: error: cannot compute sizeof (int), 77
 See \`config.log' for more details." >&2;}
    { (exit 1); exit 1; }; }
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 rm -f conftest.val
@@ -5281,7 +5310,7 @@ echo "$as_me: error: cannot compute sizeof (long), 77
 See \`config.log' for more details." >&2;}
    { (exit 1); exit 1; }; }
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 rm -f conftest.val
@@ -5642,7 +5671,7 @@ echo "$as_me: error: cannot compute sizeof (float), 77
 See \`config.log' for more details." >&2;}
    { (exit 1); exit 1; }; }
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 rm -f conftest.val
@@ -6003,7 +6032,7 @@ echo "$as_me: error: cannot compute sizeof (double), 77
 See \`config.log' for more details." >&2;}
    { (exit 1); exit 1; }; }
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 rm -f conftest.val
@@ -6805,7 +6834,7 @@ sed 's/^/| /' conftest.$ac_ext >&5
 ( exit $ac_status )
 ac_cv_header_stdc=no
 fi
-rm -f core core.* *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+rm -f core *.core gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
 fi
 fi
 fi
@@ -8043,9 +8072,11 @@ _ACEOF
 
   ctlibs_base="$ctlibs_base -lgetopt"
   LDFLAGS="$LDFLAGS -L../getopt"
+  GETOPTLONG=1
+fi
 
 
-if test 1==1; then
+if test $GETOPTLONG==1; then
   INCLUDED_GETOPT_LONG_TRUE=
   INCLUDED_GETOPT_LONG_FALSE='#'
 else
@@ -8053,7 +8084,6 @@ else
   INCLUDED_GETOPT_LONG_FALSE=
 fi
 
-fi
 
 if test "${readline}" = "true" ; then
   ctlibs_base="$ctlibs_base -lreadline"
diff --git a/configure.ac b/configure.ac
index e1927eb..e9f4c40 100644
--- a/configure.ac
+++ b/configure.ac
@@ -6,7 +6,7 @@ dnl CDPATH=
 AC_INIT
 AC_CONFIG_SRCDIR([src/ctsim.cpp])
 AM_MAINTAINER_MODE
-AM_INIT_AUTOMAKE(ctsim,4.2.4)
+AM_INIT_AUTOMAKE(ctsim,4.2.6)
 AM_CONFIG_HEADER(config.h)
 
 dnl Checks for programs.
@@ -82,8 +82,9 @@ if test "${getopt_long}" = "false" ; then
   AC_DEFINE(HAVE_GETOPT_LONG,1,[getopt_long library])
   ctlibs_base="$ctlibs_base -lgetopt"
   LDFLAGS="$LDFLAGS -L../getopt"
-  AM_CONDITIONAL(INCLUDED_GETOPT_LONG, test 1==1)
+  GETOPTLONG=1
 fi
+AM_CONDITIONAL(INCLUDED_GETOPT_LONG, test $GETOPTLONG==1)
 
 if test "${readline}" = "true" ; then
   ctlibs_base="$ctlibs_base -lreadline"
diff --git a/debian/changelog b/debian/changelog
index ace0c65..c977612 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+ctsim (4.2.6-1) unstable; urgency=low
+
+  * Update missing file from automake-1.7
+  * Test building on xfree86_4.3.0-0pre1v1
+
+ -- Kevin M. Rosenberg <kmr@debian.org>  Sun, 28 Sep 2003 10:57:05 -0600
+
 ctsim (4.2.5-1) unstable; urgency=low
 
   * Fix gcc-3.3 compilation issues (closes:200074)
diff --git a/debian/control b/debian/control
index 090d916..209ff67 100644
--- a/debian/control
+++ b/debian/control
@@ -2,9 +2,9 @@ Source: ctsim
 Section: science
 Priority: extra
 Maintainer: Kevin M. Rosenberg <kmr@debian.org>
-Build-Depends: debhelper (>= 4.0.0), wxwin2.4-headers, fftw-dev, libreadline4-dev, mesa-common-dev, libwxgtk2.4-dev, ctn-dev, libpng12-dev, dpkg-dev
+Build-Depends: debhelper (>= 4.0.0), wxwin2.4-headers, fftw-dev, libreadline4-dev, mesa-common-dev | xlibmesa-gl-dev, xlibmesa-glu-dev, libwxgtk2.4-dev, ctn-dev, libpng12-dev, dpkg-dev
 Build-Depends-Indep: debhelper (>= 4.0.0)
-Standards-Version: 3.5.10.0
+Standards-Version: 3.6.1.0
 
 Package: ctsim
 Architecture: any
diff --git a/depcomp b/depcomp
new file mode 100755
index 0000000..edb5d38
--- /dev/null
+++ b/depcomp
@@ -0,0 +1,479 @@
+#! /bin/sh
+
+# depcomp - compile a program generating dependencies as side-effects
+# Copyright 1999, 2000, 2003 Free Software Foundation, Inc.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
+# 02111-1307, USA.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
+
+if test -z "$depmode" || test -z "$source" || test -z "$object"; then
+  echo "depcomp: Variables source, object and depmode must be set" 1>&2
+  exit 1
+fi
+# `libtool' can also be set to `yes' or `no'.
+
+if test -z "$depfile"; then
+   base=`echo "$object" | sed -e 's,^.*/,,' -e 's,\.\([^.]*\)$,.P\1,'`
+   dir=`echo "$object" | sed 's,/.*$,/,'`
+   if test "$dir" = "$object"; then
+      dir=
+   fi
+   # FIXME: should be _deps on DOS.
+   depfile="$dir.deps/$base"
+fi
+
+tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
+
+rm -f "$tmpdepfile"
+
+# Some modes work just like other modes, but use different flags.  We
+# parameterize here, but still list the modes in the big case below,
+# to make depend.m4 easier to write.  Note that we *cannot* use a case
+# here, because this file can only contain one case statement.
+if test "$depmode" = hp; then
+  # HP compiler uses -M and no extra arg.
+  gccflag=-M
+  depmode=gcc
+fi
+
+if test "$depmode" = dashXmstdout; then
+   # This is just like dashmstdout with a different argument.
+   dashmflag=-xM
+   depmode=dashmstdout
+fi
+
+case "$depmode" in
+gcc3)
+## gcc 3 implements dependency tracking that does exactly what
+## we want.  Yay!  Note: for some reason libtool 1.4 doesn't like
+## it if -MD -MP comes after the -MF stuff.  Hmm.
+  "$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  mv "$tmpdepfile" "$depfile"
+  ;;
+
+gcc)
+## There are various ways to get dependency output from gcc.  Here's
+## why we pick this rather obscure method:
+## - Don't want to use -MD because we'd like the dependencies to end
+##   up in a subdir.  Having to rename by hand is ugly.
+##   (We might end up doing this anyway to support other compilers.)
+## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
+##   -MM, not -M (despite what the docs say).
+## - Using -M directly means running the compiler twice (even worse
+##   than renaming).
+  if test -z "$gccflag"; then
+    gccflag=-MD,
+  fi
+  "$@" -Wp,"$gccflag$tmpdepfile"
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
+## The second -e expression handles DOS-style file names with drive letters.
+  sed -e 's/^[^:]*: / /' \
+      -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
+## This next piece of magic avoids the `deleted header file' problem.
+## The problem is that when a header file which appears in a .P file
+## is deleted, the dependency causes make to die (because there is
+## typically no way to rebuild the header).  We avoid this by adding
+## dummy dependencies for each header file.  Too bad gcc doesn't do
+## this for us directly.
+  tr ' ' '
+' < "$tmpdepfile" |
+## Some versions of gcc put a space before the `:'.  On the theory
+## that the space means something, we add a space to the output as
+## well.
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+hp)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+sgi)
+  if test "$libtool" = yes; then
+    "$@" "-Wp,-MDupdate,$tmpdepfile"
+  else
+    "$@" -MDupdate "$tmpdepfile"
+  fi
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+
+  if test -f "$tmpdepfile"; then  # yes, the sourcefile depend on other files
+    echo "$object : \\" > "$depfile"
+
+    # Clip off the initial element (the dependent).  Don't try to be
+    # clever and replace this with sed code, as IRIX sed won't handle
+    # lines with more than a fixed number of characters (4096 in
+    # IRIX 6.2 sed, 8192 in IRIX 6.5).  We also remove comment lines;
+    # the IRIX cc adds comments like `#:fec' to the end of the
+    # dependency line.
+    tr ' ' '
+' < "$tmpdepfile" \
+    | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
+    tr '
+' ' ' >> $depfile
+    echo >> $depfile
+
+    # The second pass generates a dummy entry for each header file.
+    tr ' ' '
+' < "$tmpdepfile" \
+   | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
+   >> $depfile
+  else
+    # The sourcefile does not contain any dependencies, so just
+    # store a dummy comment line, to avoid errors with the Makefile
+    # "include basename.Plo" scheme.
+    echo "#dummy" > "$depfile"
+  fi
+  rm -f "$tmpdepfile"
+  ;;
+
+aix)
+  # The C for AIX Compiler uses -M and outputs the dependencies
+  # in a .u file.  In older versions, this file always lives in the
+  # current directory.  Also, the AIX compiler puts `$object:' at the
+  # start of each line; $object doesn't have directory information.
+  # Version 6 uses the directory in both cases.
+  stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
+  tmpdepfile="$stripped.u"
+  if test "$libtool" = yes; then
+    "$@" -Wc,-M
+  else
+    "$@" -M
+  fi
+  stat=$?
+
+  if test -f "$tmpdepfile"; then :
+  else
+    stripped=`echo "$stripped" | sed 's,^.*/,,'`
+    tmpdepfile="$stripped.u"
+  fi
+
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+
+  if test -f "$tmpdepfile"; then
+    outname="$stripped.o"
+    # Each line is of the form `foo.o: dependent.h'.
+    # Do two passes, one to just change these to
+    # `$object: dependent.h' and one to simply `dependent.h:'.
+    sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
+    sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
+  else
+    # The sourcefile does not contain any dependencies, so just
+    # store a dummy comment line, to avoid errors with the Makefile
+    # "include basename.Plo" scheme.
+    echo "#dummy" > "$depfile"
+  fi
+  rm -f "$tmpdepfile"
+  ;;
+
+icc)
+  # Intel's C compiler understands `-MD -MF file'.  However on
+  #    icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
+  # ICC 7.0 will fill foo.d with something like
+  #    foo.o: sub/foo.c
+  #    foo.o: sub/foo.h
+  # which is wrong.  We want:
+  #    sub/foo.o: sub/foo.c
+  #    sub/foo.o: sub/foo.h
+  #    sub/foo.c:
+  #    sub/foo.h:
+  # ICC 7.1 will output
+  #    foo.o: sub/foo.c sub/foo.h
+  # and will wrap long lines using \ :
+  #    foo.o: sub/foo.c ... \
+  #     sub/foo.h ... \
+  #     ...
+
+  "$@" -MD -MF "$tmpdepfile"
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  # Each line is of the form `foo.o: dependent.h',
+  # or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
+  # Do two passes, one to just change these to
+  # `$object: dependent.h' and one to simply `dependent.h:'.
+  sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process this invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
+    sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+tru64)
+   # The Tru64 compiler uses -MD to generate dependencies as a side
+   # effect.  `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
+   # At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
+   # dependencies in `foo.d' instead, so we check for that too.
+   # Subdirectories are respected.
+   dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
+   test "x$dir" = "x$object" && dir=
+   base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
+
+   if test "$libtool" = yes; then
+      tmpdepfile1="$dir.libs/$base.lo.d"
+      tmpdepfile2="$dir.libs/$base.d"
+      "$@" -Wc,-MD
+   else
+      tmpdepfile1="$dir$base.o.d"
+      tmpdepfile2="$dir$base.d"
+      "$@" -MD
+   fi
+
+   stat=$?
+   if test $stat -eq 0; then :
+   else
+      rm -f "$tmpdepfile1" "$tmpdepfile2"
+      exit $stat
+   fi
+
+   if test -f "$tmpdepfile1"; then
+      tmpdepfile="$tmpdepfile1"
+   else
+      tmpdepfile="$tmpdepfile2"
+   fi
+   if test -f "$tmpdepfile"; then
+      sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
+      # That's a tab and a space in the [].
+      sed -e 's,^.*\.[a-z]*:[	 ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
+   else
+      echo "#dummy" > "$depfile"
+   fi
+   rm -f "$tmpdepfile"
+   ;;
+
+#nosideeffect)
+  # This comment above is used by automake to tell side-effect
+  # dependency tracking mechanisms from slower ones.
+
+dashmstdout)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout, regardless of -o.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test $1 != '--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove `-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  test -z "$dashmflag" && dashmflag=-M
+  # Require at least two characters before searching for `:'
+  # in the target name.  This is to cope with DOS-style filenames:
+  # a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
+  "$@" $dashmflag |
+    sed 's:^[  ]*[^: ][^:][^:]*\:[    ]*:'"$object"'\: :' > "$tmpdepfile"
+  rm -f "$depfile"
+  cat < "$tmpdepfile" > "$depfile"
+  tr ' ' '
+' < "$tmpdepfile" | \
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+dashXmstdout)
+  # This case only exists to satisfy depend.m4.  It is never actually
+  # run, as this mode is specially recognized in the preamble.
+  exit 1
+  ;;
+
+makedepend)
+  "$@" || exit $?
+  # Remove any Libtool call
+  if test "$libtool" = yes; then
+    while test $1 != '--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+  # X makedepend
+  shift
+  cleared=no
+  for arg in "$@"; do
+    case $cleared in
+    no)
+      set ""; shift
+      cleared=yes ;;
+    esac
+    case "$arg" in
+    -D*|-I*)
+      set fnord "$@" "$arg"; shift ;;
+    # Strip any option that makedepend may not understand.  Remove
+    # the object too, otherwise makedepend will parse it as a source file.
+    -*|$object)
+      ;;
+    *)
+      set fnord "$@" "$arg"; shift ;;
+    esac
+  done
+  obj_suffix="`echo $object | sed 's/^.*\././'`"
+  touch "$tmpdepfile"
+  ${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
+  rm -f "$depfile"
+  cat < "$tmpdepfile" > "$depfile"
+  sed '1,2d' "$tmpdepfile" | tr ' ' '
+' | \
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile" "$tmpdepfile".bak
+  ;;
+
+cpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test $1 != '--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove `-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  "$@" -E |
+    sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
+    sed '$ s: \\$::' > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  cat < "$tmpdepfile" >> "$depfile"
+  sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+msvisualcpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout, regardless of -o,
+  # because we must use -o when running libtool.
+  "$@" || exit $?
+  IFS=" "
+  for arg
+  do
+    case "$arg" in
+    "-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
+	set fnord "$@"
+	shift
+	shift
+	;;
+    *)
+	set fnord "$@" "$arg"
+	shift
+	shift
+	;;
+    esac
+  done
+  "$@" -E |
+  sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  . "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::	\1 \\:p' >> "$depfile"
+  echo "	" >> "$depfile"
+  . "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+none)
+  exec "$@"
+  ;;
+
+*)
+  echo "Unknown depmode $depmode" 1>&2
+  exit 1
+  ;;
+esac
+
+exit 0
diff --git a/docs/ctsim.htb b/docs/ctsim.htb
index 5fc655a..21d6fbe 100644
Binary files a/docs/ctsim.htb and b/docs/ctsim.htb differ
diff --git a/docs/ctsim.pdf b/docs/ctsim.pdf
index 47656e0..b8f20bf 100644
Binary files a/docs/ctsim.pdf and b/docs/ctsim.pdf differ
diff --git a/docs/html.tar.gz b/docs/html.tar.gz
index 90133ea..56cfa46 100644
Binary files a/docs/html.tar.gz and b/docs/html.tar.gz differ
diff --git a/getopt/Makefile.in b/getopt/Makefile.in
index e7c813f..ca1ab59 100644
--- a/getopt/Makefile.in
+++ b/getopt/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -166,6 +166,7 @@ noinst_HEADERS = getopt.h
 INCLUDES = @my_includes@
 EXTRA_DIST = Makefile.nt
 subdir = getopt
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
@@ -187,7 +188,8 @@ LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
 DIST_SOURCES = $(libgetopt_a_SOURCES)
 HEADERS = $(noinst_HEADERS)
 
-DIST_COMMON = $(noinst_HEADERS) Makefile.am Makefile.in depcomp
+DIST_COMMON = $(noinst_HEADERS) $(srcdir)/Makefile.in Makefile.am \
+	depcomp
 SOURCES = $(libgetopt_a_SOURCES)
 
 all: all-am
@@ -218,13 +220,10 @@ distclean-compile:
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/getopt.Po@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/getopt1.Po@am__quote@
 
-distclean-depend:
-	-rm -rf ./$(DEPDIR)
-
 .c.o:
 @am__fastdepCC_TRUE@	if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCC_TRUE@	  -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<; \
-@am__fastdepCC_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCC_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCC_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -235,7 +234,7 @@ distclean-depend:
 .c.obj:
 @am__fastdepCC_TRUE@	if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCC_TRUE@	  -c -o $@ `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'; fi`; \
-@am__fastdepCC_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCC_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCC_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCC_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -334,7 +333,6 @@ check: check-am
 all-am: Makefile $(LIBRARIES) $(HEADERS)
 
 installdirs:
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -354,7 +352,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -364,9 +362,11 @@ clean: clean-am
 clean-am: clean-generic clean-noinstLIBRARIES mostlyclean-am
 
 distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
-distclean-am: clean-am distclean-compile distclean-depend \
-	distclean-generic distclean-tags
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
 
 dvi: dvi-am
 
@@ -387,6 +387,8 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
@@ -406,14 +408,13 @@ uninstall-am: uninstall-info-am
 
 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
 	clean-noinstLIBRARIES ctags distclean distclean-compile \
-	distclean-depend distclean-generic distclean-tags distdir dvi \
-	dvi-am info info-am install install-am install-data \
-	install-data-am install-exec install-exec-am install-info \
-	install-info-am install-man install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-compile \
-	mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \
-	uninstall-am uninstall-info-am
+	distclean-generic distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-data install-data-am \
+	install-exec install-exec-am install-info install-info-am \
+	install-man install-strip installcheck installcheck-am \
+	installdirs maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-compile mostlyclean-generic pdf pdf-am \
+	ps ps-am tags uninstall uninstall-am uninstall-info-am
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.
diff --git a/helical/Makefile.in b/helical/Makefile.in
index 71b26de..7bb8e48 100644
--- a/helical/Makefile.in
+++ b/helical/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -162,11 +162,12 @@ wxconfig = @wxconfig@
 wxlibs = @wxlibs@
 CLEANFILES = \*.pgm \*.if \*~ \*.pj \.*~ \#\*\# \#\*~
 subdir = helical
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES = sample-helical.sh
 DIST_SOURCES =
-DIST_COMMON = Makefile.am Makefile.in sample-helical.sh.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am sample-helical.sh.in
 all: all-am
 
 .SUFFIXES:
@@ -221,7 +222,6 @@ check: check-am
 all-am: Makefile
 
 installdirs:
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -242,7 +242,7 @@ clean-generic:
 	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -252,6 +252,7 @@ clean: clean-am
 clean-am: clean-generic mostlyclean-am
 
 distclean: distclean-am
+	-rm -f Makefile
 
 distclean-am: clean-am distclean-generic
 
@@ -274,6 +275,7 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
diff --git a/html/Makefile.in b/html/Makefile.in
index 2d26541..875ca3e 100644
--- a/html/Makefile.in
+++ b/html/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -162,13 +162,14 @@ wxconfig = @wxconfig@
 wxlibs = @wxlibs@
 @USE_HTML_TRUE@html_DATA = @htmldata@
 subdir = html
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES = simulate.html
 DIST_SOURCES =
 DATA = $(html_DATA)
 
-DIST_COMMON = Makefile.am Makefile.in simulate.html.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am simulate.html.in
 all: all-am
 
 .SUFFIXES:
@@ -242,7 +243,6 @@ all-am: Makefile $(DATA)
 
 installdirs:
 	$(mkinstalldirs) $(DESTDIR)$(htmldir)
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -262,7 +262,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -272,6 +272,7 @@ clean: clean-am
 clean-am: clean-generic mostlyclean-am
 
 distclean: distclean-am
+	-rm -f Makefile
 
 distclean-am: clean-am distclean-generic
 
@@ -294,6 +295,7 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
diff --git a/include/Makefile.in b/include/Makefile.in
index e8bfee9..8d93321 100644
--- a/include/Makefile.in
+++ b/include/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -162,13 +162,14 @@ wxconfig = @wxconfig@
 wxlibs = @wxlibs@
 noinst_HEADERS = ct.h ezplot.h pol.h sgp.h array2d.h imagefile.h backprojectors.h mpiworld.h fnetorderstream.h phantom.h timer.h sstream_subst scanner.h projections.h ctsupport.h filter.h array2dfile.h trace.h transformmatrix.h procsignal.h reconstruct.h plotfile.h hashtable.h fourier.h ctglobals.h interpolator.h ctndicom.h nographics.h
 subdir = include
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
 DIST_SOURCES =
 HEADERS = $(noinst_HEADERS)
 
-DIST_COMMON = $(noinst_HEADERS) Makefile.am Makefile.in
+DIST_COMMON = $(noinst_HEADERS) $(srcdir)/Makefile.in Makefile.am
 all: all-am
 
 .SUFFIXES:
@@ -269,7 +270,6 @@ check: check-am
 all-am: Makefile $(HEADERS)
 
 installdirs:
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -289,7 +289,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -299,6 +299,7 @@ clean: clean-am
 clean-am: clean-generic mostlyclean-am
 
 distclean: distclean-am
+	-rm -f Makefile
 
 distclean-am: clean-am distclean-generic distclean-tags
 
@@ -321,6 +322,7 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
diff --git a/libctgraphics/Makefile.in b/libctgraphics/Makefile.in
index f3dced1..6b06ef4 100644
--- a/libctgraphics/Makefile.in
+++ b/libctgraphics/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -165,6 +165,7 @@ libctgraphics_a_SOURCES = ezplot.cpp ezset.cpp pol.cpp sgp.cpp transformmatrix.c
 INCLUDES = @my_includes@
 EXTRA_DIST = Makefile.nt
 subdir = libctgraphics
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
@@ -188,7 +189,7 @@ CXXLD = $(CXX)
 CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
 	-o $@
 DIST_SOURCES = $(libctgraphics_a_SOURCES)
-DIST_COMMON = Makefile.am Makefile.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am
 SOURCES = $(libctgraphics_a_SOURCES)
 
 all: all-am
@@ -222,13 +223,10 @@ distclean-compile:
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/sgp.Po@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/transformmatrix.Po@am__quote@
 
-distclean-depend:
-	-rm -rf ./$(DEPDIR)
-
 .cpp.o:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -239,7 +237,7 @@ distclean-depend:
 .cpp.obj:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'; fi`; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -338,7 +336,6 @@ check: check-am
 all-am: Makefile $(LIBRARIES)
 
 installdirs:
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -358,7 +355,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -368,9 +365,11 @@ clean: clean-am
 clean-am: clean-generic clean-noinstLIBRARIES mostlyclean-am
 
 distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
-distclean-am: clean-am distclean-compile distclean-depend \
-	distclean-generic distclean-tags
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
 
 dvi: dvi-am
 
@@ -391,6 +390,8 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
@@ -410,14 +411,13 @@ uninstall-am: uninstall-info-am
 
 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
 	clean-noinstLIBRARIES ctags distclean distclean-compile \
-	distclean-depend distclean-generic distclean-tags distdir dvi \
-	dvi-am info info-am install install-am install-data \
-	install-data-am install-exec install-exec-am install-info \
-	install-info-am install-man install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-compile \
-	mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \
-	uninstall-am uninstall-info-am
+	distclean-generic distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-data install-data-am \
+	install-exec install-exec-am install-info install-info-am \
+	install-man install-strip installcheck installcheck-am \
+	installdirs maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-compile mostlyclean-generic pdf pdf-am \
+	ps ps-am tags uninstall uninstall-am uninstall-info-am
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.
diff --git a/libctsim/Makefile.in b/libctsim/Makefile.in
index 50e033b..97ef538 100644
--- a/libctsim/Makefile.in
+++ b/libctsim/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -166,6 +166,7 @@ libctsim_a_SOURCES = filter.cpp scanner.cpp projections.cpp phantom.cpp imagefil
 INCLUDES = @my_includes@
 EXTRA_DIST = Makefile.nt
 subdir = libctsim
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
@@ -197,7 +198,7 @@ CXXLD = $(CXX)
 CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
 	-o $@
 DIST_SOURCES = $(libctsim_a_SOURCES)
-DIST_COMMON = Makefile.am Makefile.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am
 SOURCES = $(libctsim_a_SOURCES)
 
 all: all-am
@@ -238,13 +239,10 @@ distclean-compile:
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/scanner.Po@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/trace.Po@am__quote@
 
-distclean-depend:
-	-rm -rf ./$(DEPDIR)
-
 .cpp.o:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -255,7 +253,7 @@ distclean-depend:
 .cpp.obj:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'; fi`; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -354,7 +352,6 @@ check: check-am
 all-am: Makefile $(LIBRARIES)
 
 installdirs:
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -374,7 +371,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -384,9 +381,11 @@ clean: clean-am
 clean-am: clean-generic clean-noinstLIBRARIES mostlyclean-am
 
 distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
-distclean-am: clean-am distclean-compile distclean-depend \
-	distclean-generic distclean-tags
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
 
 dvi: dvi-am
 
@@ -407,6 +406,8 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
@@ -426,14 +427,13 @@ uninstall-am: uninstall-info-am
 
 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
 	clean-noinstLIBRARIES ctags distclean distclean-compile \
-	distclean-depend distclean-generic distclean-tags distdir dvi \
-	dvi-am info info-am install install-am install-data \
-	install-data-am install-exec install-exec-am install-info \
-	install-info-am install-man install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-compile \
-	mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \
-	uninstall-am uninstall-info-am
+	distclean-generic distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-data install-data-am \
+	install-exec install-exec-am install-info install-info-am \
+	install-man install-strip installcheck installcheck-am \
+	installdirs maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-compile mostlyclean-generic pdf pdf-am \
+	ps ps-am tags uninstall uninstall-am uninstall-info-am
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.
diff --git a/libctsupport/Makefile.in b/libctsupport/Makefile.in
index c0163ab..0ffbae6 100644
--- a/libctsupport/Makefile.in
+++ b/libctsupport/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -165,6 +165,7 @@ INCLUDES = @my_includes@
 libctsupport_a_SOURCES = strfuncs.cpp syserror.cpp fnetorderstream.cpp consoleio.cpp mathfuncs.cpp xform.cpp clip.cpp plotfile.cpp hashtable.cpp interpolator.cpp globalvars.cpp
 EXTRA_DIST = Makefile.nt
 subdir = libctsupport
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
@@ -195,7 +196,7 @@ CXXLD = $(CXX)
 CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
 	-o $@
 DIST_SOURCES = $(libctsupport_a_SOURCES)
-DIST_COMMON = Makefile.am Makefile.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am
 SOURCES = $(libctsupport_a_SOURCES)
 
 all: all-am
@@ -235,13 +236,10 @@ distclean-compile:
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/syserror.Po@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/xform.Po@am__quote@
 
-distclean-depend:
-	-rm -rf ./$(DEPDIR)
-
 .cpp.o:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -252,7 +250,7 @@ distclean-depend:
 .cpp.obj:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'; fi`; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -351,7 +349,6 @@ check: check-am
 all-am: Makefile $(LIBRARIES)
 
 installdirs:
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -371,7 +368,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -381,9 +378,11 @@ clean: clean-am
 clean-am: clean-generic clean-noinstLIBRARIES mostlyclean-am
 
 distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
-distclean-am: clean-am distclean-compile distclean-depend \
-	distclean-generic distclean-tags
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
 
 dvi: dvi-am
 
@@ -404,6 +403,8 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
@@ -423,14 +424,13 @@ uninstall-am: uninstall-info-am
 
 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
 	clean-noinstLIBRARIES ctags distclean distclean-compile \
-	distclean-depend distclean-generic distclean-tags distdir dvi \
-	dvi-am info info-am install install-am install-data \
-	install-data-am install-exec install-exec-am install-info \
-	install-info-am install-man install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-compile \
-	mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \
-	uninstall-am uninstall-info-am
+	distclean-generic distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-data install-data-am \
+	install-exec install-exec-am install-info install-info-am \
+	install-man install-strip installcheck installcheck-am \
+	installdirs maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-compile mostlyclean-generic pdf pdf-am \
+	ps ps-am tags uninstall uninstall-am uninstall-info-am
 
 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 # Otherwise a system limit (for SysV at least) may be exceeded.
diff --git a/man/Makefile.in b/man/Makefile.in
index c03221f..770e52c 100644
--- a/man/Makefile.in
+++ b/man/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -160,9 +160,10 @@ webenabled = @webenabled@
 wxcflags = @wxcflags@
 wxconfig = @wxconfig@
 wxlibs = @wxlibs@
-man_MANS = pjrec.1 phm2pj.1 phm2if.1 ifexport.1 ifinfo.1 if1.1 if2.1 pjinfo.1 ifinfo.1 pj2if.1 ctsim.1 ctsimtext.1 phm2helix.1 pjHinterp.1
+man_MANS = pjrec.1 phm2pj.1 phm2if.1 ifexport.1 ifinfo.1 if1.1 if2.1 pjinfo.1 ifinfo.1 pj2if.1 ctsim.1 ctsimtext.1 phm2helix.1 pjHinterp.1 linogram.1
 EXTRA_DIST = $(man_MANS) 
 subdir = man
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
@@ -170,7 +171,7 @@ DIST_SOURCES =
 
 NROFF = nroff
 MANS = $(man_MANS)
-DIST_COMMON = Makefile.am Makefile.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am
 all: all-am
 
 .SUFFIXES:
@@ -271,7 +272,6 @@ all-am: Makefile $(MANS)
 
 installdirs:
 	$(mkinstalldirs) $(DESTDIR)$(man1dir)
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -291,7 +291,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -301,6 +301,7 @@ clean: clean-am
 clean-am: clean-generic mostlyclean-am
 
 distclean: distclean-am
+	-rm -f Makefile
 
 distclean-am: clean-am distclean-generic
 
@@ -323,6 +324,7 @@ install-man: install-man1
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
diff --git a/missing b/missing
index 7789652..fc54c64 100755
--- a/missing
+++ b/missing
@@ -1,7 +1,7 @@
 #! /bin/sh
 # Common stub for a few missing GNU programs while installing.
-# Copyright (C) 1996, 1997 Free Software Foundation, Inc.
-# Franc,ois Pinard <pinard@iro.umontreal.ca>, 1996.
+# Copyright (C) 1996, 1997, 1999, 2000, 2002, 2003 Free Software Foundation, Inc.
+# Originally by Fran,cois Pinard <pinard@iro.umontreal.ca>, 1996.
 
 # This program is free software; you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -18,11 +18,37 @@
 # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
 # 02111-1307, USA.
 
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
 if test $# -eq 0; then
   echo 1>&2 "Try \`$0 --help' for more information"
   exit 1
 fi
 
+run=:
+
+# In the cases where this matters, `missing' is being run in the
+# srcdir already.
+if test -f configure.ac; then
+  configure_ac=configure.ac
+else
+  configure_ac=configure.in
+fi
+
+case "$1" in
+--run)
+  # Try to run requested program, and just exit if it succeeds.
+  run=
+  shift
+  "$@" && exit 0
+  ;;
+esac
+
+# If it does not exist, or fails to run (possibly an outdated version),
+# try to emulate it.
 case "$1" in
 
   -h|--h|--he|--hel|--help)
@@ -35,6 +61,7 @@ error status if there is no known handling for PROGRAM.
 Options:
   -h, --help      display this help and exit
   -v, --version   output version information and exit
+  --run           try to run the given command, and emulate it if it fails
 
 Supported PROGRAM values:
   aclocal      touch file \`aclocal.m4'
@@ -43,13 +70,15 @@ Supported PROGRAM values:
   automake     touch all \`Makefile.in' files
   bison        create \`y.tab.[ch]', if possible, from existing .[ch]
   flex         create \`lex.yy.c', if possible, from existing .c
+  help2man     touch the output file
   lex          create \`lex.yy.c', if possible, from existing .c
   makeinfo     touch the output file
+  tar          try tar, gnutar, gtar, then tar without non-portable flags
   yacc         create \`y.tab.[ch]', if possible, from existing .[ch]"
     ;;
 
   -v|--v|--ve|--ver|--vers|--versi|--versio|--version)
-    echo "missing - GNU libit 0.0"
+    echo "missing 0.4 - GNU automake"
     ;;
 
   -*)
@@ -58,31 +87,46 @@ Supported PROGRAM values:
     exit 1
     ;;
 
-  aclocal)
+  aclocal*)
+    if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
+       # We have it, but it failed.
+       exit 1
+    fi
+
     echo 1>&2 "\
 WARNING: \`$1' is missing on your system.  You should only need it if
-         you modified \`acinclude.m4' or \`configure.in'.  You might want
+         you modified \`acinclude.m4' or \`${configure_ac}'.  You might want
          to install the \`Automake' and \`Perl' packages.  Grab them from
          any GNU archive site."
     touch aclocal.m4
     ;;
 
   autoconf)
+    if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
+       # We have it, but it failed.
+       exit 1
+    fi
+
     echo 1>&2 "\
 WARNING: \`$1' is missing on your system.  You should only need it if
-         you modified \`configure.in'.  You might want to install the
+         you modified \`${configure_ac}'.  You might want to install the
          \`Autoconf' and \`GNU m4' packages.  Grab them from any GNU
          archive site."
     touch configure
     ;;
 
   autoheader)
+    if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
+       # We have it, but it failed.
+       exit 1
+    fi
+
     echo 1>&2 "\
 WARNING: \`$1' is missing on your system.  You should only need it if
-         you modified \`acconfig.h' or \`configure.in'.  You might want
+         you modified \`acconfig.h' or \`${configure_ac}'.  You might want
          to install the \`Autoconf' and \`GNU m4' packages.  Grab them
          from any GNU archive site."
-    files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' configure.in`
+    files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}`
     test -z "$files" && files="config.h"
     touch_files=
     for f in $files; do
@@ -95,10 +139,15 @@ WARNING: \`$1' is missing on your system.  You should only need it if
     touch $touch_files
     ;;
 
-  automake)
+  automake*)
+    if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
+       # We have it, but it failed.
+       exit 1
+    fi
+
     echo 1>&2 "\
 WARNING: \`$1' is missing on your system.  You should only need it if
-         you modified \`Makefile.am', \`acinclude.m4' or \`configure.in'.
+         you modified \`Makefile.am', \`acinclude.m4' or \`${configure_ac}'.
          You might want to install the \`Automake' and \`Perl' packages.
          Grab them from any GNU archive site."
     find . -type f -name Makefile.am -print |
@@ -106,6 +155,34 @@ WARNING: \`$1' is missing on your system.  You should only need it if
 	   while read f; do touch "$f"; done
     ;;
 
+  autom4te)
+    if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
+       # We have it, but it failed.
+       exit 1
+    fi
+
+    echo 1>&2 "\
+WARNING: \`$1' is needed, and you do not seem to have it handy on your
+         system.  You might have modified some files without having the
+         proper tools for further handling them.
+         You can get \`$1' as part of \`Autoconf' from any GNU
+         archive site."
+
+    file=`echo "$*" | sed -n 's/.*--output[ =]*\([^ ]*\).*/\1/p'`
+    test -z "$file" && file=`echo "$*" | sed -n 's/.*-o[ ]*\([^ ]*\).*/\1/p'`
+    if test -f "$file"; then
+	touch $file
+    else
+	test -z "$file" || exec >$file
+	echo "#! /bin/sh"
+	echo "# Created by GNU Automake missing as a replacement of"
+	echo "#  $ $@"
+	echo "exit 0"
+	chmod +x $file
+	exit 1
+    fi
+    ;;
+
   bison|yacc)
     echo 1>&2 "\
 WARNING: \`$1' is missing on your system.  You should only need it if
@@ -159,7 +236,37 @@ WARNING: \`$1' is missing on your system.  You should only need it if
     fi
     ;;
 
+  help2man)
+    if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
+       # We have it, but it failed.
+       exit 1
+    fi
+
+    echo 1>&2 "\
+WARNING: \`$1' is missing on your system.  You should only need it if
+	 you modified a dependency of a manual page.  You may need the
+	 \`Help2man' package in order for those modifications to take
+	 effect.  You can get \`Help2man' from any GNU archive site."
+
+    file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
+    if test -z "$file"; then
+	file=`echo "$*" | sed -n 's/.*--output=\([^ ]*\).*/\1/p'`
+    fi
+    if [ -f "$file" ]; then
+	touch $file
+    else
+	test -z "$file" || exec >$file
+	echo ".ab help2man is required to generate this page"
+	exit 1
+    fi
+    ;;
+
   makeinfo)
+    if test -z "$run" && (makeinfo --version) > /dev/null 2>&1; then
+       # We have makeinfo, but it failed.
+       exit 1
+    fi
+
     echo 1>&2 "\
 WARNING: \`$1' is missing on your system.  You should only need it if
          you modified a \`.texi' or \`.texinfo' file, or any other file
@@ -175,12 +282,51 @@ WARNING: \`$1' is missing on your system.  You should only need it if
     touch $file
     ;;
 
+  tar)
+    shift
+    if test -n "$run"; then
+      echo 1>&2 "ERROR: \`tar' requires --run"
+      exit 1
+    fi
+
+    # We have already tried tar in the generic part.
+    # Look for gnutar/gtar before invocation to avoid ugly error
+    # messages.
+    if (gnutar --version > /dev/null 2>&1); then
+       gnutar "$@" && exit 0
+    fi
+    if (gtar --version > /dev/null 2>&1); then
+       gtar "$@" && exit 0
+    fi
+    firstarg="$1"
+    if shift; then
+	case "$firstarg" in
+	*o*)
+	    firstarg=`echo "$firstarg" | sed s/o//`
+	    tar "$firstarg" "$@" && exit 0
+	    ;;
+	esac
+	case "$firstarg" in
+	*h*)
+	    firstarg=`echo "$firstarg" | sed s/h//`
+	    tar "$firstarg" "$@" && exit 0
+	    ;;
+	esac
+    fi
+
+    echo 1>&2 "\
+WARNING: I can't seem to be able to run \`tar' with the given arguments.
+         You may want to install GNU tar or Free paxutils, or check the
+         command line arguments."
+    exit 1
+    ;;
+
   *)
     echo 1>&2 "\
 WARNING: \`$1' is needed, and you do not seem to have it handy on your
          system.  You might have modified some files without having the
          proper tools for further handling them.  Check the \`README' file,
-         it often tells you about the needed prerequirements for installing
+         it often tells you about the needed prerequisites for installing
          this package.  You may also peek at any GNU archive site, in case
          some other package would contain this missing \`$1' program."
     exit 1
diff --git a/src/Makefile.in b/src/Makefile.in
index 5237f1c..40c4fc0 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -175,6 +175,7 @@ threadproj.h threadraster.cpp threadraster.h dlgezplot.cpp dlgezplot.h
 ctsim_DEPENDENCIES = ../libctgraphics/libctgraphics.a ../libctsupport/libctsupport.a ../libctsim/libctsim.a ../include/ct.h
 ctsim_LDADD = -L../libctgraphics -L../libctsupport -L../libctsim @ctlibs@
 subdir = src
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
@@ -213,7 +214,7 @@ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
 CCLD = $(CC)
 LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
 DIST_SOURCES = $(ctsim_SOURCES)
-DIST_COMMON = Makefile.am Makefile.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am
 SOURCES = $(ctsim_SOURCES)
 
 all: all-am
@@ -274,13 +275,10 @@ distclean-compile:
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/tips.Po@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/views.Po@am__quote@
 
-distclean-depend:
-	-rm -rf ./$(DEPDIR)
-
 .cpp.o:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -291,7 +289,7 @@ distclean-depend:
 .cpp.obj:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'; fi`; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -391,7 +389,6 @@ all-am: Makefile $(PROGRAMS)
 
 installdirs:
 	$(mkinstalldirs) $(DESTDIR)$(bindir)
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -411,7 +408,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -421,9 +418,11 @@ clean: clean-am
 clean-am: clean-binPROGRAMS clean-generic mostlyclean-am
 
 distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
-distclean-am: clean-am distclean-compile distclean-depend \
-	distclean-generic distclean-tags
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
 
 dvi: dvi-am
 
@@ -444,6 +443,8 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
@@ -463,11 +464,11 @@ uninstall-am: uninstall-binPROGRAMS uninstall-info-am
 
 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
 	clean-generic ctags distclean distclean-compile \
-	distclean-depend distclean-generic distclean-tags distdir dvi \
-	dvi-am info info-am install install-am install-binPROGRAMS \
-	install-data install-data-am install-exec install-exec-am \
-	install-info install-info-am install-man install-strip \
-	installcheck installcheck-am installdirs maintainer-clean \
+	distclean-generic distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-binPROGRAMS install-data \
+	install-data-am install-exec install-exec-am install-info \
+	install-info-am install-man install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
 	maintainer-clean-generic mostlyclean mostlyclean-compile \
 	mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \
 	uninstall-am uninstall-binPROGRAMS uninstall-info-am
diff --git a/tools/Makefile.in b/tools/Makefile.in
index 2b6cab6..3c6a568 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -1,4 +1,4 @@
-# Makefile.in generated by automake 1.7.3 from Makefile.am.
+# Makefile.in generated by automake 1.7.7 from Makefile.am.
 # @configure_input@
 
 # Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003
@@ -179,6 +179,7 @@ ctsimtext_lam_LDADD = @ctlamlibs@
 
 @USE_LAM_TRUE@ctsimtext_lam_DEPENDENCIES = $(SOURCE_DEPEND)
 subdir = tools
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
 CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES = sample-ctsim.sh
@@ -219,7 +220,7 @@ CXXLD = $(CXX)
 CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
 	-o $@
 DIST_SOURCES = $(ctsimtext_SOURCES) $(ctsimtext_lam_SOURCES)
-DIST_COMMON = Makefile.am Makefile.in sample-ctsim.sh.in
+DIST_COMMON = $(srcdir)/Makefile.in Makefile.am sample-ctsim.sh.in
 SOURCES = $(ctsimtext_SOURCES) $(ctsimtext_lam_SOURCES)
 
 all: all-am
@@ -286,13 +287,10 @@ distclean-compile:
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pjinfo.Po@am__quote@
 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/pjrec.Po@am__quote@
 
-distclean-depend:
-	-rm -rf ./$(DEPDIR)
-
 .cpp.o:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `test -f '$<' || echo '$(srcdir)/'`$<; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -303,7 +301,7 @@ distclean-depend:
 .cpp.obj:
 @am__fastdepCXX_TRUE@	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" \
 @am__fastdepCXX_TRUE@	  -c -o $@ `if test -f '$<'; then $(CYGPATH_W) '$<'; else $(CYGPATH_W) '$(srcdir)/$<'; fi`; \
-@am__fastdepCXX_TRUE@	then mv "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
+@am__fastdepCXX_TRUE@	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; \
 @am__fastdepCXX_TRUE@	else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; \
 @am__fastdepCXX_TRUE@	fi
 @AMDEP_TRUE@@am__fastdepCXX_FALSE@	source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
@@ -403,7 +401,6 @@ all-am: Makefile $(PROGRAMS)
 
 installdirs:
 	$(mkinstalldirs) $(DESTDIR)$(bindir)
-
 install: install-am
 install-exec: install-exec-am
 install-data: install-data-am
@@ -423,7 +420,7 @@ mostlyclean-generic:
 clean-generic:
 
 distclean-generic:
-	-rm -f Makefile $(CONFIG_CLEAN_FILES)
+	-rm -f $(CONFIG_CLEAN_FILES)
 
 maintainer-clean-generic:
 	@echo "This command is intended for maintainers to use"
@@ -433,9 +430,11 @@ clean: clean-am
 clean-am: clean-binPROGRAMS clean-generic mostlyclean-am
 
 distclean: distclean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
-distclean-am: clean-am distclean-compile distclean-depend \
-	distclean-generic distclean-tags
+distclean-am: clean-am distclean-compile distclean-generic \
+	distclean-tags
 
 dvi: dvi-am
 
@@ -458,6 +457,8 @@ install-man:
 installcheck-am:
 
 maintainer-clean: maintainer-clean-am
+	-rm -rf ./$(DEPDIR)
+	-rm -f Makefile
 
 maintainer-clean-am: distclean-am maintainer-clean-generic
 
@@ -477,11 +478,11 @@ uninstall-am: uninstall-binPROGRAMS uninstall-info-am
 
 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
 	clean-generic ctags distclean distclean-compile \
-	distclean-depend distclean-generic distclean-tags distdir dvi \
-	dvi-am info info-am install install-am install-binPROGRAMS \
-	install-data install-data-am install-exec install-exec-am \
-	install-info install-info-am install-man install-strip \
-	installcheck installcheck-am installdirs maintainer-clean \
+	distclean-generic distclean-tags distdir dvi dvi-am info \
+	info-am install install-am install-binPROGRAMS install-data \
+	install-data-am install-exec install-exec-am install-info \
+	install-info-am install-man install-strip installcheck \
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