From 47601e0ab94ccdc360824178cf068a05bcbdb0eb Mon Sep 17 00:00:00 2001 From: "Kevin M. Rosenberg" Date: Tue, 13 Feb 2001 18:19:46 +0000 Subject: [PATCH] r536: no message --- doc/ctsim-appendix.tex | 2 +- doc/ctsim-concepts.tex | 7 +++++-- doc/ctsim-gui.tex | 4 ++-- doc/ctsim-install.tex | 4 ++-- doc/ctsim-textui.tex | 14 ++++++++++---- doc/ctsim-web.tex | 9 ++++----- doc/ctsim.tex | 21 ++++++++++++--------- doc/tex2rtf.ini | 3 ++- 8 files changed, 38 insertions(+), 26 deletions(-) diff --git a/doc/ctsim-appendix.tex b/doc/ctsim-appendix.tex index 86305a5..8be0087 100644 --- a/doc/ctsim-appendix.tex +++ b/doc/ctsim-appendix.tex @@ -1,7 +1,7 @@ \appendix \chapter{Simple Graphics Package}\label{appendix}\index{Appendix}% -\setheader{{\it Appendix \thechapter}}{}{}{}{}{{\it Appendix \thechapter}}% +\setheader{{\it Appendix \thechapter}}{}{}{\ctsimheadtitle}{}{{\it Appendix \thechapter}}% \ctsimfooter% diff --git a/doc/ctsim-concepts.tex b/doc/ctsim-concepts.tex index 3f0dab0..3a01615 100644 --- a/doc/ctsim-concepts.tex +++ b/doc/ctsim-concepts.tex @@ -1,5 +1,5 @@ \chapter{Concepts}\index{Concepts}% -\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}% +\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}% \ctsimfooter% \section{Overview}\label{conceptoverview}\index{Concepts,Overview}% @@ -348,9 +348,12 @@ $r$ is the maximum error of a 2 by 2 pixel area. To compare two images, $A$ and $B$, each of which has $n$ columns and $m$ rows, these values are calculated as below. + +\latexonly{ \begin{equation} d = \frac{\sum_{i=0}^{n}{\sum_{j=0}^{m}{(A_{ij} - B_{ij})^2}}}{m n} \end{equation} \begin{equation} -r = max(|A_{ij} - B{ij}|) +r = \max(|A_{ij} - B{ij}|) \end{equation} +} diff --git a/doc/ctsim-gui.tex b/doc/ctsim-gui.tex index d54bfeb..4bc989c 100644 --- a/doc/ctsim-gui.tex +++ b/doc/ctsim-gui.tex @@ -1,5 +1,5 @@ \chapter{The Graphical User Interface}\label{ctsim}\index{ctsim}% -\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}% +\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}% \ctsimfooter% @@ -384,7 +384,7 @@ technique. A setting of \texttt{idiff} is optimal. \twocolitem{\textbf{Filter Generation}}{Selects the filter generation. With convolution, \texttt{direct} is the proper method to select. With any of the frequency methods, -\texttt{inverse-fourier}is the best method. +\texttt{inverse-fourier} is the best method. \begin{itemize}\itemsep=0pt \item direct \item inverse-fourier diff --git a/doc/ctsim-install.tex b/doc/ctsim-install.tex index c697bf4..eb32f91 100644 --- a/doc/ctsim-install.tex +++ b/doc/ctsim-install.tex @@ -1,5 +1,5 @@ \chapter{Installation}\label{installation}\index{Installation}% -\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}% +\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}% \ctsimfooter% \section{Download}\label{download}\index{Installation,Download}% @@ -22,7 +22,7 @@ and Windows 2000. Due to use of the OpenGL and htmlhelp libraries, \ctsim\ is not compatible with the stock Windows 95 system. \section{Installing Linux RPM}\index{Installation,Linux}% -Download the RPM file from as \helprefn{shown}{download}. Then use +Download the RPM file, then use the \texttt{rpm} manager program:\\ \hspace{1cm}\texttt{rpm -Uvh} \emph{ctsim-*.rpm}\\ diff --git a/doc/ctsim-textui.tex b/doc/ctsim-textui.tex index 0c123cc..166a0dc 100644 --- a/doc/ctsim-textui.tex +++ b/doc/ctsim-textui.tex @@ -1,8 +1,12 @@ \chapter{The Command Line Interface}\label{ctsimtext}\index{ctsimtext}% -\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}% +\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}% \ctsimfooter% -\ctsimtext\ is a master shell for all of the command-line utilities. +\ctsimtext\ is a master shell for all of the command-line utilities. The +command-line utilities can perform most of the functions of the graphical +shell. These command-line utilities are especially appropriate for use on +systems without graphics, batch files, and parallel processing in a Beowulf +computer cluster. \usage \ctsimtext\ can be invoked via three different methods. @@ -11,7 +15,9 @@ methods. \ctsimtext\ offers a command-line to enter the function-names and their parameters. The output of the command is displayed. Further commands may be given to \ctsimtext. The shell is exited by the -\texttt{quit} command. +\texttt{quit} command. \ctsimtext\ uses the +\urlref{readline}{http://www.gnu.org} library on UNIX and Linux platforms +to provide for command history processing. \item \ctsimtext\ can also be called to execute a single command. This is especially useful for batch @@ -29,7 +35,7 @@ as a shortcut rather than the equivalent command \\ \end{enumerate} -\section{Parallel Processing With a Computer Cluster} +\section{Parallel Processing} \ctsimtext\ can be used to spread it's processing over a cluster. Specifically, \ctsimtext\ supports the \urlref{LAM}{http://www.mpi.nd.edu/lam} version of the MPI environment. On platforms with LAM installed, a parallel version of diff --git a/doc/ctsim-web.tex b/doc/ctsim-web.tex index c617b18..e2a933d 100644 --- a/doc/ctsim-web.tex +++ b/doc/ctsim-web.tex @@ -1,5 +1,5 @@ \chapter{The Web Interface}\label{webinterface}\index{Web Interface}% -\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}% +\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}% \ctsimfooter% \section{Overview}\index{Web Interface,Overview}% @@ -7,8 +7,8 @@ \texttt{ctsim.cgi} takes projections of a standard phantom object, performs reconstruction, and then compares the rasterized phantom object with the reconstruction. The comparison is performed both -visually by an image subtraction as well as by standard statistics -as described by Herman\cite{HERMAN80}. +visually by an image subtraction as well as by statistical +analysis. \section{Requirements}\index{Web Interface,Requirements}% \begin{itemize}\itemsep=0pt @@ -20,6 +20,5 @@ as described by Herman\cite{HERMAN80}. current web browsers support PNG. \item A knowledgable system administrator. It is beyond the - scope of this manual to explain the installation of the CGI - interfact. + scope of this manual to explain the configuration a web server. \end{itemize} diff --git a/doc/ctsim.tex b/doc/ctsim.tex index 75672f7..2eda7d7 100644 --- a/doc/ctsim.tex +++ b/doc/ctsim.tex @@ -2,7 +2,7 @@ \usepackage{graphicx} \usepackage{texhelp} \usepackage{fancyhea} -%\usepackage{mysober} +\usepackage{mysober} \usepackage{mytitle} \usepackage{verbatim} \usepackage{makeidx} @@ -28,6 +28,9 @@ \newcommand{\mandate}[0]{February 12, 2001} \newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}} \newcommand{\doublehyphen}[1]{-\,-\texttt{#1}} +\newcommand{\ctsimvernum}[0]{3.0.0beta1} +\newcommand{\ctsimver}[0]{CTSim \ctsimvernum} +\newcommand{\ctsimheadtitle}{\ctsimver Manual} \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}} @@ -44,14 +47,14 @@ \pagestyle{fancyplain}% \pagenumbering{roman}% -\setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}% +\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}% \ctsimfooter \parskip=2pt \tableofcontents% \parskip=10pt \chapter*{Copyright notice}% -\setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}% +\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}% \setfooter{\thepage}{}{}{}{\manver}{\thepage}% Copyright (c) 1983-2001 Kevin Rosenberg, M.D. @@ -74,7 +77,7 @@ PERFORMANCE OF THIS SOFTWARE. \chapter{Introduction}\label{introduction} \pagenumbering{arabic} -\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}% +\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}% \ctsimfooter @@ -114,12 +117,12 @@ I hope that you enjoy \ctsim! \bibliographystyle{plain} \bibliography{ctsim} \addcontentsline{toc}{chapter}{Bibliography} -\setheader{{\it REFERENCES}}{}{}{}{}{{\it REFERENCES}}% -\ctsimfooter% +\setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}} +\ctsimfooter \addcontentsline{toc}{chapter}{Index} -\setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}} % -\ctsimfooter % -\printindex % +\setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} % +\ctsimfooter +\printindex \end{document} diff --git a/doc/tex2rtf.ini b/doc/tex2rtf.ini index dbb8e13..c3777bf 100644 --- a/doc/tex2rtf.ini +++ b/doc/tex2rtf.ini @@ -15,4 +15,5 @@ winHelpTitle = "CTSim Manual" \includeonly [1]{} \frac [2]{} \nonumber [0]{} - +\sum [0]{} +\max [0]{} -- 2.34.1