From 8c02f79d3423db4a2d54e35cd4795629834357c9 Mon Sep 17 00:00:00 2001 From: "Kevin M. Rosenberg" Date: Thu, 15 Feb 2001 03:16:35 +0000 Subject: [PATCH] r543: no message --- doc/ctsim-concepts.tex | 9 +++-- doc/ctsim-gui.tex | 2 +- doc/ctsim-textui.tex | 86 +++++++++++++++++++++--------------------- doc/ctsim.prj | 38 +++++++++---------- doc/ctsim.tex | 37 ++++++++---------- 5 files changed, 85 insertions(+), 87 deletions(-) diff --git a/doc/ctsim-concepts.tex b/doc/ctsim-concepts.tex index e76a77f..ff76a9e 100644 --- a/doc/ctsim-concepts.tex +++ b/doc/ctsim-concepts.tex @@ -361,9 +361,12 @@ size of $m \times n$. In equation \ref{eequation} $[n/2]$ and $[m/2]$ denote the integers less than $n/2$ and $m/2$, respectively. \latexignore{These formulas are shown in the print documentation of \ctsim.} -\latexonly{\begin{equation}\label{dequation}d = \sqrt{\frac{\displaystyle \sum_{i=1}^{n}{\sum_{j=1}^{m}{(p_{i,j} - r_{i,j})^2}}} {\displaystyle \sum_{i=1}^{n}{\sum_{j=1}^{m}{(p_{i,j} - \bar{p})^2}}}}\end{equation}} -\latexonly{\begin{equation}\label{requation}r = \frac{\displaystyle \sum_{i=1}^{n}{\sum_{j=1}^{m}{|p_{i,j} - r_{i,j}|}}} {\displaystyle \sum_{i=1}^{n}{\sum_{j=1}^{m}{|p_{i,j}|}}}\end{equation}} +% +%Tex2RTF can not handle the any subscripts or superscripts for the inner summation unless +% have a space character before the \sum +\latexonly{\begin{equation}\label{dequation} d =\sqrt{\frac{\displaystyle \sum_{i=1}^{n}{ \sum_{j=1}^{m}{(p_{i,j} - r_{i,j})^2}}}{\displaystyle \sum_{i=1}^{n}{ \sum_{j=1}^{m}{(p_{i,j} - \bar{p})^2}}}}\end{equation}} +\latexonly{\[\label{requation}r = \frac{ \displaystyle \sum_{i=1}^{n}{ \sum_{j=1}^{m}{|p_{i,j} - r_{i,j}|}}}{ \displaystyle \sum_{i=1}^{n}{ \sum_{j=1}^{m}{|p_{i,j}|}}}\]} \latexonly{\begin{equation}\label{eequation}e = \max_{1 \le k \le [n/2] \atop 1 \le l \le [m/2]}(|P_{k,l} - R_{k,l}|)\end{equation}} \latexonly{where} -\latexonly{\begin{equation}\label{bigpequation}P_{k,l} = {\textstyle \frac{1}{4}} (p_{2k,2l} + p_{2k+1,2l} + p_{2k,2j+l} + p_{2k+1,2l+1})\end{equation}} +\latexonly{\[\label{bigpequation}P_{k,l} = \textstyle \frac{1}{4} (p_{2k,2l} + p_{2k+1,2l} + p_{2k,2l+l} + p_{2k+1,2l+1})\]} \latexonly{\begin{equation}\label{bigrequation}R_{k,l} = \textstyle \frac{1}{4} (r_{2k,2l} + r_{2k+1,2l} + r_{2k,2l+1} + r_{2k+1,2l+1})\end{equation}} diff --git a/doc/ctsim-gui.tex b/doc/ctsim-gui.tex index a2f744f..0e31eb1 100644 --- a/doc/ctsim-gui.tex +++ b/doc/ctsim-gui.tex @@ -98,7 +98,7 @@ directory with the filename of \texttt{.ctsim}. \begin{twocollist} \twocolitem{\textbf{Advanced options}}{By default, this is turned off in new installations. These advanced options are not required for normal simulations. When \texttt{Advanced -Options} is set, \ctsim\ will display more options during scanning of programs and +Options} is set, \ctsim\ will display more options during scanning of phantoms and the reconstruction of projections.} \twocolitem{\textbf{Ask before deleting new documents}}{By default, this is turned on in diff --git a/doc/ctsim-textui.tex b/doc/ctsim-textui.tex index c6fc11d..900c162 100644 --- a/doc/ctsim-textui.tex +++ b/doc/ctsim-textui.tex @@ -55,13 +55,13 @@ both real and complex valued images. \texttt{if1 input-filename output-filename [options...]} \textbf{Options} -\begin{itemize}\itemsep=0pt - \item \doublehyphen{invert} - Negate pixel values - \item \doublehyphen{log} - Take natural logrithm of pixel values - \item \doublehyphen{exp} - Take natural exponent of pixel values - \item \doublehyphen{sqr} - Take square of pixel values - \item \doublehyphen{sqrt} - Take square root of pixel values -\end{itemize} +\begin{twocollist} + \twocolitem{\doublehyphen{invert}}{Negate pixel values.} + \twocolitem{\doublehyphen{log}}{Take natural logrithm of pixel values.} + \twocolitem{\doublehyphen{exp}}{Take natural exponent of pixel values.} + \twocolitem{\doublehyphen{sqr}}{Take square of pixel values.} + \twocolitem{\doublehyphen{sqrt}}{Take square root of pixel values.} +\end{twocollist} \section{if2}\label{if2}\index{if2}% Performs math functions on a two images. The command works with both @@ -71,15 +71,15 @@ real and complex valued images. \texttt{if2 input-filename1 input-filename2 output-filename [options...]} \textbf{Options} -\begin{itemize}\itemsep=0pt - \item \doublehyphen{add} - Add the two images - \item \doublehyphen{sub} - Subtract the two images - \item \doublehyphen{multiply} - Multiply the two images - \item \doublehyphen{divide} - Divide the two images - \item \doublehyphen{comp} - Statistically compare the two images - \item \doublehyphen{column-plot n} - Plot the values of a particular col - \item \doublehyphen{row-plot n} - Plot the values of a particular row -\end{itemize} +\begin{twocollist} + \twocolitem{\doublehyphen{add}}{Add the two images.} + \twocolitem{\doublehyphen{sub}}{Subtract the two images.} + \twocolitem{\doublehyphen{multiply}}{Multiply the two images.} + \twocolitem{\doublehyphen{divide}}{Divide the two images.} + \twocolitem{\doublehyphen{comp}}{Statistically compare the two images.} + \twocolitem{\doublehyphen{column-plot n}}{Plot the values of a particular column.} + \twocolitem{\doublehyphen{row-plot n}}{Plot the values of a particular row.} +\end{twocollist} \section{ifexport}\label{ifexport}\index{ifexport}% Export an image file to a standard graphics file. @@ -88,21 +88,21 @@ Export an image file to a standard graphics file. \texttt{ifexport input-filename output-filename -\,-format }\emph{graphic-format} \texttt{ [options...]} \textbf{Options} -\begin{itemize}\itemsep=0pt - \item \doublehyphen{format} +\begin{twocollist} + \twocolitem{\doublehyphen{format}}{ \begin{itemize}\itemsep=0pt \item \texttt{pgm} - Portable graymap format. \item \texttt{pgmasc} - ASCII PGM format. \item \texttt{png} - Portable network graphics format. \item \texttt{png16} - 16-bit PNG format. - \end{itemize} - \item \doublehyphen{center} - Set center of intensity window. + \end{itemize}} + \twocolitem{\doublehyphen{center}}{Set center of intensity window. \begin{itemize}\itemsep=0pt \item \texttt{median} \item \texttt{mode} \item \texttt{mean} - \end{itemize} - \item \doublehyphen{auto} - Set half-width of intensity window. + \end{itemize}} + \twocolitem{\doublehyphen{auto}}{Set half-width of intensity window as a multiple of the standard deviation. \begin{itemize}\itemsep=0pt \item \texttt{full} \item \texttt{std0.1} @@ -110,12 +110,12 @@ Export an image file to a standard graphics file. \item \texttt{std1} \item \texttt{std2} \item \texttt{std3} - \end{itemize} - \item \doublehyphen{scale} - Set size of output image. A value of - \texttt{1} is default and creates an output image the same size as the input image. - \item \doublehyphen{min} - Set the minimum intensity value. - \item \doublehyphen{max} - Set the maximum intensity value. -\end{itemize} + \end{itemize}} + \twocolitem{\doublehyphen{scale}}{Set size of output image. A value of + \texttt{1} is default and creates an output image the same size as the input image.} + \twocolitem{\doublehyphen{min}}{Set the minimum intensity value.} + \twocolitem{\doublehyphen{max}}{Set the maximum intensity value.} +\end{twocollist} \section{ifinfo}\label{ifinfo}\index{ifinfo}% @@ -125,12 +125,12 @@ Displays information about an imagefile. \texttt{ifinfo input-filename [options...]} \textbf{Options} -\begin{itemize}\itemsep=0pt - \item \doublehyphen{labels} - Display history labels. - \item \doublehyphen{no-labels} - Suppress history labels. - \item \doublehyphen{stats} - Display image statistics. - \item \doublehyphen{no-stats} - Suppress image statistics. -\end{itemize} +\begin{twocollist} + \twocolitem{\doublehyphen{labels}}{Display history labels.} + \twocolitem{\doublehyphen{no-labels}}{Suppress history labels.} + \twocolitem{\doublehyphen{stats}}{Display image statistics.} + \twocolitem{\doublehyphen{no-stats}}{Suppress image statistics.} +\end{twocollist} \section{phm2pj}\label{phm2pj}\index{phm2pj}% Simulates collection of X-rays data (projections) around a phantom object. @@ -207,17 +207,17 @@ Displays information about a projection file. \texttt{pjinfo projection-filename [options...]} \textbf{Options} -\begin{itemize}\itemsep=0pt - \item \doublehyphen{binaryheader} - Dump the binary header to the standard output. +\begin{twocollist} + \twocolitem{\doublehyphen{binaryheader}}{Dump the binary header to the standard output. This option is only used when manually creating a composite projection file from - several different projection files. - \item \doublehyphen{binaryview} - Dump binary view data to the standard output. + several different projection files.} + \twocolitem{\doublehyphen{binaryview}}{Dump binary view data to the standard output. This option is only used when manually creating a composite projection file from - several different projection files. - \item \doublehyphen{startview} - Sets starting view to display. Default is \texttt{0}. - \item \doublehyphen{endview} - Sets ending view to display. Default is the last view. - \item \doublehyphen{dump} - Print all projection data to the console. -\end{itemize} + several different projection files.} + \twocolitem{\doublehyphen{startview}}{Sets starting view to display. Default is \texttt{0}.} + \twocolitem{\doublehyphen{endview}}{Sets ending view to display. Default is the last view.} + \twocolitem{\doublehyphen{dump}}{Print all projection data to the console.} +\end{twocollist} \section{pjrec}\label{pjrec}\index{pjrec}% Reconstructs the interior of an object from a projection file. diff --git a/doc/ctsim.prj b/doc/ctsim.prj index 53c4d9e..ed50acf 100644 --- a/doc/ctsim.prj +++ b/doc/ctsim.prj @@ -5,34 +5,37 @@ 1 ctsim.tex 17 -7 -3 +0 +0 ctsim.tex TeX -134230010 0 42 2 14 28 22 22 1099 609 -ctsim-concepts.tex +402665466 0 104 1 42 1 22 22 1099 609 +ctsim-textui.tex TeX -12282 2 340 28 340 33 110 110 1187 697 -ctsim-gui.tex +268447738 0 257 1 258 1 198 198 1275 785 +ctsim-appendix.tex TeX -12282 0 81 22 80 1 176 176 1253 763 -C:\Program Files\SecureCRT 3.0\download\ct.tex +268447738 0 16 31 12 10 44 44 1121 631 +ctsim-concepts.tex TeX -268439546 0 3 1 698 1 132 132 1048 719 -ctsim-textui.tex +268447738 0 362 1 362 1 110 110 1187 697 +mytitle.sty +DATA +273679026 0 16 14 8 13 66 66 1143 653 +ctsim-gui.tex TeX -12282 2 196 30 196 35 198 198 1275 785 +268447738 0 431 23 431 39 176 176 1253 763 ctsim-install.tex TeX -12282 5 32 54 32 55 110 110 1187 697 -ctsim-appendix.tex -TeX -12282 0 0 1 5 1 44 44 1121 631 +268447738 0 45 19 46 62 110 110 1187 697 ctsim-web.tex TeX -268447739 0 4 19 0 1 88 88 1165 675 +268447739 0 30 18 32 1 88 88 1165 675 +C:\Program Files\SecureCRT 3.0\download\ct.tex +TeX +268439546 0 3 1 600 1 132 132 1048 719 texhelp.sty DATA 273679026 0 112 14 92 1 176 176 1253 763 @@ -54,9 +57,6 @@ DATA C:\Program Files\WinEdt\WinEdt.txt ASCII 273688506 0 0 1 936 20 0 0 1077 587 -mytitle.sty -DATA -273679026 0 11 11 11 43 66 66 1143 653 cut TeX 268447739 0 3 1 3 1 66 66 1143 653 diff --git a/doc/ctsim.tex b/doc/ctsim.tex index 90670eb..6b4d73f 100644 --- a/doc/ctsim.tex +++ b/doc/ctsim.tex @@ -10,12 +10,6 @@ \usepackage{hyperref} \input{psbox.tex} -\setlength{\textheight}{9in} -\setlength{\textwidth}{6.5in} -\setlength{\topmargin}{-0.25in} -\setlength{\evensidemargin}{0in} -\setlength{\oddsidemargin}{0in} - \latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}} \hyphenation{poly-gon-al} @@ -48,10 +42,16 @@ \date{February 9, 2001}% \makeindex% -\begin{document}% -\maketitle% -\pagestyle{fancyplain}% -\pagenumbering{roman}% +\begin{document} +\textheight=9in +\textwidth=6.5in +\topmargin=-0.25in +\evensidemargin=0in +\oddsidemargin=0in + +\maketitle +\pagestyle{fancyplain} +\pagenumbering{roman} \setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}% \ctsimfooter @@ -102,17 +102,12 @@ presented. Finally, the installation of \ctsim is discussed. I hope that you enjoy \ctsim! -%\include{ctsim-concepts} - -%\include{ctsim-gui} - -%\include{ctsim-textui} - -%\include{ctsim-web} - -%\include{ctsim-install} - -%\include{ctsim-appendix} +\include{ctsim-concepts} +\include{ctsim-gui} +\include{ctsim-textui} +\include{ctsim-web} +\include{ctsim-install} +\include{ctsim-appendix} \newpage -- 2.34.1