X-Git-Url: http://git.kpe.io/?p=umlisp.git;a=blobdiff_plain;f=sql-classes.lisp;h=20ef37eafe82939234e727cfa8441c18f3edfa97;hp=9d6852b8cca7bcebda125394e74023f02b7b6631;hb=57c4b059639968903aec88e65103a7263cb97535;hpb=e70c7b119ecfffb895d5536d0edb1fd373633038 diff --git a/sql-classes.lisp b/sql-classes.lisp index 9d6852b..20ef37e 100644 --- a/sql-classes.lisp +++ b/sql-classes.lisp @@ -35,12 +35,14 @@ "")) (%%lrl (format nil " AND ~:@(~A~)<=" lrl)) (%%where (when where-name - (format nil " where ~:@(~A~)~A" where-name + (format nil " WHERE ~:@(~A~)~A" where-name (if like " like " "")))) - (%%limit (gensym "LIMIT-")) - (%%filter (gensym "FILTER-"))) - `(let ((%%limit ,limit) - (%%filter ,filter)) + (%filter (gensym "FILTER-")) + (%single (gensym "SINGLE-")) + (%limit (gensym "LIMIT-"))) + `(let ((,%limit ,limit) + (,%single ,single) + (,%filter ,filter)) (concatenate 'string ,%%fields @@ -53,45 +55,45 @@ (number (concatenate 'string "='" (write-to-string ,where-value) "'")) (null - " is null") + " IS NULL") (t (format nil ,(if like "'%~A%'" "='~A'") ,where-value))))) - (if ##filter (concatenate 'string " AND " ##filter) "") + (if ,%filter (concatenate 'string + ,(if %%where " AND " " WHERE ") + ,%filter) "") (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "") ,@(when %%order (list %%order)) - (if (or ,single ##limit) - (cond - ((and ,single (> ##limit 1)) - (error "Can't set single and limit > 1.")) - (,single - " LIMIT 1") - (##limit - (format nil " LIMIT ~D" ##limit)) - (t - "")) - ""))))) + (cond + ((and ,%single ,%limit) + (error "Can't set single and limit")) + (,%single + " LIMIT 1") + (,%limit + (format nil " LIMIT ~D" ,%limit)) + (t + "")))))) (defun query-string-eval (table fields &optional srl where-name where-value &key (lrl "KCUILRL") single distinct order like limit filter) (when single (setq limit 1)) (concatenate 'string - (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)" - (if distinct "distinct " "") fields table) - (if where-name (format nil " where ~:@(~A~)" where-name) "") + (format nil "SELECT ~A~{~:@(~A~)~^,~} FROM ~:@(~A~)" + (if distinct "DISTINCT " "") fields table) + (if where-name (format nil " WHERE ~:@(~A~)" where-name) "") (if where-name (format nil (typecase where-value (number "='~D'") - (null " is null") + (null " IS NULL") (t - (if like " like '%~A%""='~A'"))) + (if like " LINK '%~A%""='~A'"))) where-value) "") (if filter (concatenate 'string " AND " filter) nil) - (if srl (format nil " and ~:@(~A~)<=~D" lrl srl) "") - (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) "") - (if limit (format nil " limit ~D" limit) ""))) + (if srl (format nil " AND ~:@(~A~)<=~D" lrl srl) "") + (if order (format nil " ORDER BY ~{~:@(~A~) ~(~A~)~^,~}" order) "") + (if limit (format nil " LIMIT ~D" limit) ""))) (defmacro umlisp-query (table fields srl where-name where-value @@ -102,17 +104,17 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" `(,query-cmd (query-string ,table ,fields ,srl ,where-name ,where-value :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like - :filter filter :limit ,limit))) + :filter ,filter :limit ,limit))) (defmacro umlisp-query-eval (table fields srl where-name where-value - &key (lrl "KCUILRL") single distinct order like + &key (lrl "KCUILRL") single distinct order like filter limit) "Query the UMLisp database. Return a list of umlisp objects whose name is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" `(mutex-sql-query (query-string-eval ,table ,fields ,srl ,where-name ,where-value :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like - :filter filter :limit ,limit))) + :filter ,filter :limit ,limit))) ;; only WHERE-VALUE and SRL are evaluated (defmacro collect-umlisp-query ((table fields srl where-name where-value @@ -202,6 +204,16 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (setq ,sui (parse-sui ,sui)) ,sui)) +(defmacro ensure-aui-integer (aui) + `(if (stringp ,aui) + (setq ,aui (parse-aui ,aui)) + ,aui)) + +(defmacro ensure-rui-integer (rui) + `(if (stringp ,rui) + (setq ,rui (parse-rui ,rui)) + ,rui)) + (defmacro ensure-tui-integer (tui) `(if (stringp ,tui) (setq ,tui (parse-tui ,tui)) @@ -212,40 +224,44 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (setq ,eui (parse-eui ,eui)) ,eui)) -(defun find-ucon-cui (cui &key (srl *current-srl*)) +(defun make-ucon-cui (cui) + (ensure-cui-integer cui) + (when cui + (make-instance 'ucon :cui cui))) + +(defun find-ucon-cui (cui &key (srl *current-srl*) without-pfstr) "Find ucon for a cui" (ensure-cui-integer cui) (unless cui (return-from find-ucon-cui nil)) - (let ((tuple (car (mutex-sql-query - (format nil - "SELECT kcuilrl,str FROM MRCONSO WHERE CUI=~D AND KPFENG=1~A" - cui (if srl (format nil " AND SRL<=~D" srl) "")))))) - (unless tuple - (setq tuple (car (mutex-sql-query - (format nil - "SELECT kcuilrl,str FROM MRCONSO WHERE CUI=~D" - cui (if srl (format nil " AND SRL<=~D" srl) nil)))))) - (unless tuple - (return-from find-ucon-cui nil)) - (make-instance 'ucon :cui cui :pfstr (second tuple) - :lrl (ensure-integer (first tuple))))) - -(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*)) - "Find ucon for a cui" - (ensure-cui-integer cui) - (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t) - (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl) - :pfstr nil))) + (if without-pfstr + (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t) + (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl) + :pfstr nil))) + (or + (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t :filter "KPFENG=1") + (make-instance 'ucon :cui cui :pfstr str + :lrl kcuilrl)) + (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t) + (make-instance 'ucon :cui cui :pfstr str + :lrl kcuilrl)))) (defun find-pfstr-cui (cui &key (srl *current-srl*)) "Find preferred string for a cui" (ensure-cui-integer cui) (or - (collect-umlisp-query (mrconso (kpfstr) srl cui cui :distinct t - :filter " KPFENG=1" :single t)) - (collect-umlisp-query (mrconso (kpfstr) srl cui cui :distinct t - :single t)))) + (collect-umlisp-query (mrconso (str) srl cui cui :distinct t + :filter " KPFENG=1" :single t) + str) + (collect-umlisp-query (mrconso (str) srl cui cui :distinct t + :single t) + str))) + +(defun find-lrl-cui (cui &key (srl *current-srl*)) + "Find LRL for a cui" + (ensure-cui-integer cui) + (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :distinct t :single t) + (ensure-integer kcuilrl))) (defun find-ucon-lui (lui &key (srl *current-srl*)) "Find list of ucon for lui" @@ -270,7 +286,7 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-ucon-aui (aui &key (srl *current-srl*)) "Find list of ucon for aui" - (ensure-sui-integer aui) + (ensure-aui-integer aui) (collect-umlisp-query (mrconso (cui kcuilrl) srl aui aui :distinct t) (make-instance 'ucon :cui (ensure-integer cui) :pfstr (find-pfstr-cui cui) :lrl (ensure-integer kcuilrl)))) @@ -344,24 +360,21 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-udoc-key (key) "Return list of abbreviation documentation for a key" (collect-umlisp-query (mrdoc (value type expl) nil dockey key) - (make-instance 'udoc :key key :value value :type type :expl expl))) + (make-instance 'udoc :dockey key :dvalue value :dtype type :expl expl))) (defun find-udoc-value (value) "Return abbreviation documentation" (collect-umlisp-query (mrdoc (dockey type expl) nil value value) - (make-instance 'udoc :key dockey :value value :type type :expl expl))) + (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl))) -(defun find-udoc-key-value (key value) - (let ((tuple (car (mutex-sql-query - (format nil "SELECT TYPE,EXPL FROM MRDOC WHERE DOCKEY='~A' AND VALUE='~A'" - key value))))) - (when tuple - (make-instance 'udoc :key key :value value :type (first tuple) :expl (second tuple))))) +(defun find-udoc-key-value (dockey value) + (collect-umlisp-query (mrdoc (type expl) nil dockey dockey :filter (format nil "VALUE='~A'" value)) + (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl))) (defun find-udoc-all () "Return all abbreviation documentation" (collect-umlisp-query (mrdoc (dockey value type expl) nil nil nil) - (make-instance 'udoc :key dockey :value value :type type :expl expl))) + (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl))) (defun find-usty-cui (cui &key (srl *current-srl*)) "Return a list of usty for cui" @@ -375,14 +388,28 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" :distinct t) (make-instance 'usty :tui (ensure-integer tui) :sty sty))) -(defun find-urel-cui (cui &key (srl *current-srl*)) +(defun find-urel-cui (cui &key (srl *current-srl*) filter without-pfstr2) "Return a list of urel for cui" (ensure-cui-integer cui) (collect-umlisp-query (mrrel (aui1 rel stype1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf) - srl cui1 cui :lrl "KSRL") - (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel + srl cui1 cui :lrl "KSRL" :filter filter) + (let ((rel + (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel + :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2 + :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir + :suppress suppress :cvf cvf))) + (unless without-pfstr2 + (setf (slot-value rel 'pfstr2) (find-pfstr-cui cui2))) + rel))) + +(defun find-urel-rui (rui &key (srl *current-srl*)) + "Return the urel for a rui" + (ensure-rui-integer rui) + (collect-umlisp-query (mrrel (aui1 rel stype1 cui1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf) + srl rui rui :lrl "KSRL" :single t) + (make-instance 'urel :cui1 cui1 :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2 - :rui rui :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir + :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir :suppress suppress :cvf cvf :pfstr2 (find-pfstr-cui cui2)))) (defun find-cui2-urel-cui (cui &key (srl *current-srl*)) @@ -397,8 +424,10 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (ensure-cui-integer cui2) (collect-umlisp-query (mrrel (rel cui1 aui1 stype1 aui2 stype2 rela rui srui sab sl rg dir suppress cvf) srl cui2 cui2 :lrl "KSRL") - (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2) :stype2 stype2 :rui rui :srui srui - :stype1 stype1 :cui1 (ensure-integer cui1) :aui1 (ensure-integer aui1) + (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2) + :stype2 stype2 :rui (ensure-integer rui) :srui srui + :stype1 stype1 :cui1 (ensure-integer cui1) + :aui1 (ensure-integer aui1) :rela rela :sab sab :sl sl :rg rg :dir dir :suppress suppress :cvf cvf :pfstr2 (find-pfstr-cui cui2)))) @@ -532,15 +561,15 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-uso-cuisui (cui sui &key (srl *current-srl*)) (ensure-sui-integer sui) (ensure-cui-integer cui) - (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str) srl kcuisui - (make-cuisui cui sui) :lrl srl) + (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str) + srl kcuisui (make-cuisui cui sui) :lrl srl) (make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty :cui cui :sui sui :saui saui :sdui sdui :scui scui :lat lat :str str))) (defun find-uso-cui (cui &key (srl *current-srl*) (english-only nil) limit) (ensure-cui-integer cui) - (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str) + (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str sui) srl cui cui :lrl srl :limit limit :filter (when english-only "LAT='ENG'")) (make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty @@ -549,11 +578,11 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (defun find-uso-aui (aui &key (srl *current-srl*)) (ensure-sui-integer aui) - (collect-umlisp-query (mrconso (sab cui sui code srl tty saui sdui scui lat str) srl aui - aui :lrl srl :single t) + (collect-umlisp-query (mrconso (sab cui sui code srl tty saui sdui scui lat + str) srl aui aui :lrl srl :single t) (make-instance 'uso :aui aui :cui cui :sab sab :code code :srl srl :tty tty - :sui sui :saui saui :sdui sdui :scui scui - :lat lat :str str))) + :sui sui :saui saui :sdui sdui :scui scui :lat lat + :str str))) (defun find-ucxt-cuisui (cui sui &key (srl *current-srl*)) (ensure-cui-integer cui) @@ -587,7 +616,7 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (ensure-cui-integer cui) (ensure-lui-integer lui) (ensure-sui-integer sui) - (let ((ls "select CODE,ATN,SAB,ATV from MRSAT where ")) + (let ((ls "SELECT CODE,ATN,SAB,ATV FROM MRSAT WHERE ")) (cond (sui (string-append ls "KCUISUI='" (integer-string (make-cuisui cui sui) 14) @@ -620,7 +649,7 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" (find-usty-tui tui))) (defun find-usab-all () - "Find usab for a key" + "Return all usab objects" (collect-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver vstart vend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin ssn scit) nil nil nil) @@ -673,6 +702,15 @@ is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS" :torule torule :tores tores :maprule maprule :maptype maptype :mapatn mapatn :mapatv mapatv :cvf cvf))) +(defun find-usmap-cui (cui) + (ensure-cui-integer cui) + (collect-umlisp-query (mrsmap (mapsetsab fromexpr fromtype rel rela toexpr totype cvf) + nil mapsetcui cui) + (make-instance 'usmap :mapsetcui cui :mapsetsab mapsetsab + :fromexpr fromexpr :fromtype fromtype + :rel rel :rela rela :toexpr toexpr :totype totype + :cvf cvf))) + ;;;; Cross table find functions (defun find-ucon-tui (tui &key (srl *current-srl*))