r11410: abstract interfaces for medtermserver

diff --git a/data-structures.lisp b/data-structures.lisp
index 36b874c7973fab89f922a6ea67b83b9a5ac88971..5f86198b396c32da53aa0cdcdcfda5f56d00c112 100644 (file)
--- a/data-structures.lisp
+++ b/data-structures.lisp
@@ -20,27 +20,35 @@
 
 ;;; Paths for files
 
+(defparameter *release* "2006AC")
+
 (defparameter *umls-path*
-  (make-pathname :directory '(:absolute "srv" "umls" "2006AC"))
+  (make-pathname :directory (list :absolute "srv" "umls" *release*))
   "Path for base of UMLS data files")
 
+(defparameter *meta-dir*
+  (make-pathname :directory '(:relative "META")))
+
+(defparameter *lex-dir*
+  (make-pathname :directory '(:relative "LEX")))
+
+(defparameter *net-dir*
+  (make-pathname :directory '(:relative "NET")))
+
 (defparameter *meta-path*
-    (merge-pathnames
-     (make-pathname :directory '(:relative "META"))
-     *umls-path*))
+  (merge-pathnames *meta-dir* *umls-path*))
 
 (defparameter *lex-path*
-    (merge-pathnames
-     (make-pathname :directory '(:relative "LEX"))
-     *umls-path*))
+  (merge-pathnames *lex-dir* *umls-path*))
 
 (defparameter *net-path*
-    (merge-pathnames
-     (make-pathname :directory '(:relative "NET"))
-     *umls-path*))
+  (merge-pathnames *net-dir* *umls-path*))
 
 (defun umls-path! (p)
-  (setq *umls-path* p))
+  (setq *umls-path* p)
+  (setq *meta-path* (merge-pathnames *meta-dir* *umls-path*))
+  (setq *lex-path* (merge-pathnames *lex-dir* *umls-path*))
+  (setq *net-path* (merge-pathnames *net-dir* *umls-path*)))
 
 
 ;;; Structures for parsing UMLS text files
@@ -57,7 +65,7 @@
 
 (defvar *octet-sql-storage* t
   "Used to deciding field lengths. Use nil if using UTF-8 database encoding. But, UTF-8 will cause MySQL to double the bytes used for fixed field sizes.")
-  
+
 ;; Preliminary objects to replace structures
 
 (defclass ufile ()

diff --git a/sql.lisp b/sql.lisp
index d2900d6d2a8bb40231d52cac24d6cc18b08e3c19..83f38e97164311bea10885f4f95866bfc18800d9 100644 (file)
--- a/sql.lisp
+++ b/sql.lisp
@@ -32,7 +32,11 @@
   *umls-sql-db*)
 
 (defun umls-sql-db! (db)
-  (setq *umls-sql-db* db))
+  (etypecase db
+    (string
+     (setq *umls-sql-db* db))
+    (keyword
+     (setq *umls-sql-db* (lookup-db-name db)))))
 
 (defvar *umls-sql-user* "secret")
 (defun umls-sql-user ()
@@ -62,10 +66,13 @@
   (sql-disconnect-pooled)
   (setq *umls-sql-type* h))
 
+(defun umls-connection-spec ()
+  (list *umls-sql-host* *umls-sql-db*
+        *umls-sql-user* *umls-sql-passwd*))
+
 (defun sql-connect ()
   "Connect to UMLS database, automatically used pooled connections"
-  (clsql:connect (list *umls-sql-host* (lookup-db-name *umls-sql-db*)
-                      *umls-sql-user* *umls-sql-passwd*)
+  (clsql:connect (umls-connection-spec)
                 :database-type *umls-sql-type* :pool t))
 
 (defun sql-disconnect (conn)