1 /*****************************************************************************
5 ** Purpose: Take projections of a phantom object
7 ** Date Started: Aug 2001
9 ** This is part of the CTSim program
10 ** Copyright (C) 1983-2000 Kevin Rosenberg
12 ** $Id: phm2helix.cpp,v 1.1 2001/09/24 09:40:42 kevin Exp $
14 ** This program is free software; you can redistribute it and/or modify
15 ** it under the terms of the GNU General Public License (version 2) as
16 ** published by the Free Software Foundation.
18 ** This program is distributed in the hope that it will be useful,
19 ** but WITHOUT ANY WARRANTY; without even the implied warranty of
20 ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 ** GNU General Public License for more details.
23 ** You should have received a copy of the GNU General Public License
24 ** along with this program; if not, write to the Free Software
25 ** Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
26 ******************************************************************************/
32 enum { O_PHANTOMPROG, O_PHMFILE, O_DESC, O_NRAY, O_ROTANGLE, O_GEOMETRY, O_FOCAL_LENGTH, O_CENTER_DETECTOR_LENGTH,
33 O_VIEW_RATIO, O_SCAN_RATIO, O_OFFSETVIEW, O_TRACE, O_VERBOSE, O_HELP, O_DEBUG, O_VERSION };
35 static struct option phm2helix_options[] =
37 {"phantom", 1, 0, O_PHANTOMPROG},
38 {"desc", 1, 0, O_DESC},
39 {"nray", 1, 0, O_NRAY},
40 {"rotangle", 1, 0, O_ROTANGLE},
41 {"geometry", 1, 0, O_GEOMETRY},
42 {"focal-length", 1, 0, O_FOCAL_LENGTH},
43 {"center-detector-length", 1, 0, O_CENTER_DETECTOR_LENGTH},
44 {"view-ratio", 1, 0, O_VIEW_RATIO},
45 {"scan-ratio", 1, 0, O_SCAN_RATIO},
46 {"offsetview", 1, 0, O_OFFSETVIEW},
47 {"trace", 1, 0, O_TRACE},
48 {"verbose", 0, 0, O_VERBOSE},
49 {"help", 0, 0, O_HELP},
50 {"debug", 0, 0, O_DEBUG},
51 {"version", 0, 0, O_VERSION},
52 {"phmfile", 1, 0, O_PHMFILE},
56 static const char* g_szIdStr = "$Id: phm2helix.cpp,v 1.1 2001/09/24 09:40:42 kevin Exp $";
60 phm2helix_usage (const char *program)
62 std::cout << "usage: " << fileBasename(program) << " outfile ndet nview phmprog [OPTIONS]\n";
63 std::cout << "Calculate (projections) through time varying phantom object \n\n";
64 std::cout << " outfile Name of output file for projectsions\n";
65 std::cout << " ndet Number of detectors\n";
66 std::cout << " nview Number of rotated views\n";
67 std::cout << " phmprog Name of phm generation executable\n";
68 std::cout << " --phmfile Temp phantom file name \n";
69 std::cout << " --desc Description of raysum\n";
70 std::cout << " --nray Number of rays per detector (default = 1)\n";
71 std::cout << " --rotangle Angle to rotate view through (fraction of a circle)\n";
72 std::cout << " (default = select appropriate for geometry)\n";
73 std::cout << " --geometry Geometry of scanning\n";
74 std::cout << " parallel Parallel scan beams (default)\n";
75 std::cout << " equilinear Equilinear divergent scan beams\n";
76 std::cout << " equiangular Equiangular divergent scan beams\n";
77 std::cout << " --focal-length Focal length ratio (ratio to radius of phantom)\n";
78 std::cout << " (default = 1)\n";
79 std::cout << " --view-ratio Length to view (view diameter to phantom diameter)\n";
80 std::cout << " (default = 1)\n";
81 std::cout << " --scan-ratio Length to scan (scan diameter to view diameter)\n";
82 std::cout << " (default = 1)\n";
83 std::cout << " --offsetview Intial gantry offset in 'views' (default = 0)\n";
84 std::cout << " --trace Trace level to use\n";
85 std::cout << " none No tracing (default)\n";
86 std::cout << " console Trace text level\n";
87 std::cout << " phantom Trace phantom image\n";
88 std::cout << " proj Trace projections\n";
89 std::cout << " plot Trace plot\n";
90 std::cout << " clipping Trace clipping\n";
91 std::cout << " --verbose Verbose mode\n";
92 std::cout << " --debug Debug mode\n";
93 std::cout << " --version Print version\n";
94 std::cout << " --help Print this help message\n";
99 phm2helix_main (int argc, char* const argv[])
102 std::string optGeometryName = Scanner::convertGeometryIDToName(Scanner::GEOMETRY_PARALLEL);
103 char *opt_outfile = NULL;
104 std::string opt_desc;
105 std::string opt_PhmProg;
106 std::string opt_PhmFileName = "tmpphmfile";
109 int opt_offsetview = 0;
111 double dOptFocalLength = 2.;
112 double dOptCenterDetectorLength = 2;
113 double dOptViewRatio = 1.;
114 double dOptScanRatio = 1.;
115 int opt_trace = Trace::TRACE_NONE;
118 double opt_rotangle = -1;
125 int c = getopt_long(argc, argv, "", phm2helix_options, NULL);
138 if ((opt_trace = Trace::convertTraceNameToID(optarg))
139 == Trace::TRACE_INVALID) {
140 phm2helix_usage(argv[0]);
145 opt_PhmFileName = optarg;
151 opt_rotangle = strtod(optarg, &endptr);
152 endstr = optarg + strlen(optarg);
153 if (endptr != endstr) {
154 std::cerr << "Error setting --rotangle to " << optarg << std::endl;
155 phm2helix_usage(argv[0]);
160 optGeometryName = optarg;
163 dOptFocalLength = strtod(optarg, &endptr);
164 endstr = optarg + strlen(optarg);
165 if (endptr != endstr) {
166 std::cerr << "Error setting --focal-length to " << optarg << std::endl;
167 phm2helix_usage(argv[0]);
171 case O_CENTER_DETECTOR_LENGTH:
172 dOptCenterDetectorLength = strtod(optarg, &endptr);
173 endstr = optarg + strlen(optarg);
174 if (endptr != endstr) {
175 std::cerr << "Error setting --center-detector-length to " << optarg << std::endl;
176 phm2helix_usage(argv[0]);
181 dOptViewRatio = strtod(optarg, &endptr);
182 endstr = optarg + strlen(optarg);
183 if (endptr != endstr) {
184 std::cerr << "Error setting --view-ratio to " << optarg << std::endl;
185 phm2helix_usage(argv[0]);
190 dOptScanRatio = strtod(optarg, &endptr);
191 endstr = optarg + strlen(optarg);
192 if (endptr != endstr) {
193 std::cerr << "Error setting --scan-ratio to " << optarg << std::endl;
194 phm2helix_usage(argv[0]);
199 opt_nray = strtol(optarg, &endptr, 10);
200 endstr = optarg + strlen(optarg);
201 if (endptr != endstr) {
202 std::cerr << "Error setting --nray to %s" << optarg << std::endl;
203 phm2helix_usage(argv[0]);
208 opt_offsetview = strtol(optarg, &endptr, 10);
209 endstr = optarg + strlen(optarg);
210 if (endptr != endstr) {
211 std::cerr << "Error setting --offsetview to %s" << optarg << std::endl;
212 phm2helix_usage(argv[0]);
218 std::cout << "Version: " << VERSION << std::endl << g_szIdStr << std::endl;
220 std::cout << "Unknown version number\n";
225 phm2helix_usage(argv[0]);
228 phm2helix_usage(argv[0]);
231 } // end of while loop
233 if (optind + 4 != argc) {
234 phm2helix_usage(argv[0]);
238 opt_outfile = argv[optind];
239 opt_ndet = strtol(argv[optind+1], &endptr, 10);
240 endstr = argv[optind+1] + strlen(argv[optind+1]);
241 if (endptr != endstr) {
242 std::cerr << "Error setting --ndet to " << argv[optind+1] << std::endl;
243 phm2helix_usage(argv[0]);
246 opt_nview = strtol(argv[optind+2], &endptr, 10);
247 endstr = argv[optind+2] + strlen(argv[optind+2]);
248 if (endptr != endstr) {
249 std::cerr << "Error setting --nview to " << argv[optind+2] << std::endl;
250 phm2helix_usage(argv[0]);
253 opt_PhmProg = argv[optind+3];
255 if (opt_rotangle < 0) {
256 if (optGeometryName.compare ("parallel") == 0)
262 std::ostringstream desc;
263 desc << "phm2helix: NDet=" << opt_ndet
264 << ", Nview=" << opt_nview
265 << ", NRay=" << opt_nray
266 << ", RotAngle=" << opt_rotangle
267 << ", OffsetView =" << opt_offsetview
268 << ", Geometry=" << optGeometryName
269 << ", PhantomProg=" << opt_PhmProg
270 << ", PhmFileName=" << opt_PhmFileName;
271 if (opt_desc.length()) {
272 desc << ": " << opt_desc;
274 opt_desc = desc.str();
276 opt_rotangle *= TWOPI;
279 char extcommand[100];
281 std::cout << opt_PhmProg << " " << 0 << " " << opt_nview << " " << opt_PhmFileName << std::endl;
282 //extcommand << opt_PhmProg << " " << 0 << " " << opt_nview << " " << opt_PhmFileName ;
284 sprintf(extcommand, "%s %d %d %s", opt_PhmProg.c_str(), 0, opt_nview, opt_PhmFileName.c_str() );
286 stat = system( extcommand );
288 std::cerr << "Error executing external phantom program " << opt_PhmProg << " with command " << extcommand << std::endl;
290 phm.createFromFile (opt_PhmFileName.c_str());
291 remove(opt_PhmFileName.c_str());
293 Scanner scanner (phm, optGeometryName.c_str(), opt_ndet, opt_nview,
294 opt_offsetview, opt_nray, opt_rotangle, dOptFocalLength,
295 dOptCenterDetectorLength, dOptViewRatio, dOptScanRatio);
296 if (scanner.fail()) {
297 std::cout << "Scanner Creation Error: " << scanner.failMessage()
302 Projections pjGlobal(scanner);
305 for( int iView = 0; iView < opt_nview; iView++ ){
307 std::cout << opt_PhmProg << " " << iView << " " << opt_nview << " " << opt_PhmFileName << std::endl;
308 //extcommand << opt_PhmProg << " " << iView << " " << opt_nview << " " << opt_PhmFileName ;
310 sprintf(extcommand, "%s %d %d %s", opt_PhmProg.c_str(), iView, opt_nview, opt_PhmFileName.c_str() );
311 stat = system( extcommand );
314 std::cerr << "Error executing external phantom program " << opt_PhmProg << " with command " << extcommand << std::endl;
316 phmtmp.createFromFile (opt_PhmFileName.c_str());
318 scanner.collectProjections (pjGlobal, phmtmp, iView,
319 1, scanner.offsetView(), true, opt_trace);
320 remove(opt_PhmFileName.c_str());
324 pjGlobal.setCalcTime (timerProgram.timerEnd());
325 pjGlobal.setRemark (opt_desc);
326 pjGlobal.write (opt_outfile);
328 phm.print (std::cout);
329 std::cout << std::endl;
330 std::ostringstream os;
331 pjGlobal.printScanInfo (os);
332 std::cout << os.str() << std::endl;
333 std::cout << " Remark: " << pjGlobal.remark() << std::endl;
334 std::cout << "Run time: " << pjGlobal.calcTime() << " seconds\n";
343 main (int argc, char* argv[])
348 retval = phm2helix_main(argc, argv);
350 // dmalloc_shutdown();
352 } catch (exception e) {
353 std::cerr << "Exception: " << e.what() << std::endl;
355 std::cerr << "Unknown exception\n";