;;;; Author: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: sql-classes.lisp,v 1.75 2003/05/07 22:53:36 kevin Exp $
+;;;; $Id: sql-classes.lisp,v 1.76 2003/05/11 21:48:31 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
;;;
;;; Read from SQL database
+(defmacro ensure-cui-integer (cui)
+ `(if (stringp ,cui)
+ (setq ,cui (parse-cui ,cui))
+ ,cui))
+
+(defmacro ensure-lui-integer (lui)
+ `(if (stringp ,lui)
+ (setq ,lui (parse-lui ,lui))
+ ,lui))
+
+(defmacro ensure-sui-integer (sui)
+ `(if (stringp ,sui)
+ (setq ,sui (parse-sui ,sui))
+ ,sui))
+
+(defmacro ensure-tui-integer (tui)
+ `(if (stringp ,tui)
+ (setq ,tui (parse-tui ,tui))
+ ,tui))
+
+(defmacro ensure-eui-integer (eui)
+ `(if (stringp ,eui)
+ (setq ,eui (parse-eui ,eui))
+ ,eui))
+
(defun find-ucon-cui (cui &key (srl *current-srl*))
"Find ucon for a cui"
- (with-umlisp-query (mrcon (kpfstr kcuilrl) srl cui (parse-cui cui) :single t)
- (make-instance 'ucon :cui (parse-cui cui) :pfstr kpfstr
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mrcon (kpfstr kcuilrl) srl cui cui :single t)
+ (make-instance 'ucon :cui cui :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*))
"Find ucon for a cui"
- (with-umlisp-query (mrcon (kcuilrl) srl cui (parse-cui cui) :single t)
- (make-instance 'ucon :cui (parse-cui cui) :lrl (ensure-integer kcuilrl)
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mrcon (kcuilrl) srl cui cui :single t)
+ (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl)
:pfstr nil)))
(defun find-pfstr-cui (cui &key (srl *current-srl*))
"Find preferred string for a cui"
- (with-umlisp-query (mrcon (kpfstr) srl cui (parse-cui cui) :single t)
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mrcon (kpfstr) srl cui cui :single t)
kpfstr))
(defun find-ucon-lui (lui &key (srl *current-srl*))
"Find list of ucon for lui"
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui (parse-lui lui)
+ (ensure-lui-integer lui)
+ (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui lui
:distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-sui (sui &key (srl *current-srl*))
"Find list of ucon for sui"
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui (parse-sui sui)
- :distinct t)
+ (ensure-sui-integer sui)
+ (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui sui :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-cuisui (cui sui &key (srl *current-srl*))
"Find ucon for cui/sui"
+ (ensure-cui-integer cui)
+ (ensure-sui-integer sui)
(when (and cui sui)
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl kcuisui
- (make-cuisui (parse-cui cui) (parse-sui sui)))
- (make-instance 'ucon :cui (ensure-integer cui)
+ (with-umlisp-query (mrcon (kpfstr kcuilrl) srl kcuisui
+ (make-cuisui cui sui))
+ (make-instance 'ucon :cui cui
:pfstr kpfstr
:lrl (ensure-integer kcuilrl)))))
(defun find-udef-cui (cui &key (srl *current-srl*))
"Return a list of udefs for cui"
- (with-umlisp-query (mrdef (sab def) srl cui (parse-cui cui) :lrl "KSRL")
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mrdef (sab def) srl cui cui :lrl "KSRL")
(make-instance 'udef :sab sab :def def)))
(defun find-usty-cui (cui &key (srl *current-srl*))
"Return a list of usty for cui"
- (with-umlisp-query (mrsty (tui sty) srl cui (parse-cui cui) :lrl "KLRL")
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mrsty (tui sty) srl cui cui :lrl "KLRL")
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-usty-word (word &key (srl *current-srl*))
(defun find-urel-cui (cui &key (srl *current-srl*))
"Return a list of urel for cui"
+ (ensure-cui-integer cui)
(with-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1
- (parse-cui cui) :lrl "KSRL")
- (make-instance 'urel :cui1 (parse-cui cui) :rel rel
+ cui :lrl "KSRL")
+ (make-instance 'urel :cui1 cui :rel rel
:cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl
:mg mg :pfstr2 kpfstr2)))
(defun find-urel-cui2 (cui2 &key (srl *current-srl*))
"Return a list of urel for cui2"
+ (ensure-cui-integer cui2)
(with-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2
- (parse-cui cui2) :lrl "KSRL")
- (make-instance 'urel :cui2 (parse-cui cui2) :rel rel
+ cui2 :lrl "KSRL")
+ (make-instance 'urel :cui2 cui2 :rel rel
:cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl
:mg mg :pfstr2 kpfstr2)))
(defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*))
+ (ensure-cui-integer cui2)
(loop for cui in (remove-duplicates
(mapcar #'cui1 (find-urel-cui2 cui2 :srl srl)))
collect (find-ucon-cui cui :srl srl)))
(defun find-ucoc-cui (cui &key (srl *current-srl*))
"Return a list of ucoc for cui"
+ (ensure-cui-integer cui)
(with-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1
- (parse-cui cui) :lrl klrl :order (cof asc))
+ cui :lrl klrl :order (cof asc))
(setq cui2 (ensure-integer cui2))
(when (zerop cui2) (setq cui2 nil))
- (make-instance 'ucoc :cui1 (parse-cui cui) :cui2 (ensure-integer cui2)
+ (make-instance 'ucoc :cui1 cui :cui2 (ensure-integer cui2)
:soc soc :cot cot :cof (ensure-integer cof) :coa coa
:pfstr2 kpfstr2)))
(defun find-ucoc-cui2 (cui2 &key (srl *current-srl*))
"Return a list of ucoc for cui2"
+ (ensure-cui-integer cui2)
(with-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2
- (parse-cui cui2) :lrl klrl :order (cof asc))
- (setq cui2 (ensure-integer cui2))
+ cui2 :lrl klrl :order (cof asc))
(when (zerop cui2) (setq cui2 nil))
- (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 (parse-cui cui2)
+ (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 cui2
:soc soc :cot cot :cof (ensure-integer cof) :coa coa
:pfstr2 kpfstr2)))
(defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*))
"List of ucon with co-occurance cui2"
+ (ensure-cui-integer cui2)
(mapcar
#'(lambda (cui) (find-ucon-cui cui :srl srl))
(remove-duplicates (mapcar #'cui1 (find-ucoc-cui2 cui2 :srl srl)))))
(defun find-ulo-cui (cui &key (srl *current-srl*))
"Return a list of ulo for cui"
- (with-umlisp-query (mrlo (isn fr un sui sna soui) srl cui (parse-cui cui)
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mrlo (isn fr un sui sna soui) srl cui cui
:lrl "KLRL")
(make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un
:sui (ensure-integer sui) :sna sna :soui soui)))
(defun find-uatx-cui (cui &key (srl *current-srl*))
"Return a list of uatx for cui"
- (with-umlisp-query (mratx (sab rel atx) srl cui (parse-cui cui) :lrl ksrl)
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mratx (sab rel atx) srl cui cui :lrl ksrl)
(make-instance 'uatx :sab sab :rel rel :atx atx)))
(defun find-uterm-cui (cui &key (srl *current-srl*))
"Return a list of uterm for cui"
- (with-umlisp-query (mrcon (lui lat ts kluilrl) srl cui (parse-cui cui)
+ (ensure-cui-integer cui)
+ (with-umlisp-query (mrcon (lui lat ts kluilrl) srl cui cui
:lrl kluilrl :distinct t)
- (make-instance 'uterm :lui (ensure-integer lui) :cui (parse-cui cui)
+ (make-instance 'uterm :lui (ensure-integer lui) :cui cui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-lui (lui &key (srl *current-srl*))
"Return a list of uterm for lui"
- (with-umlisp-query (mrcon (cui lat ts kluilrl) srl lui (parse-lui lui)
+ (ensure-lui-integer lui)
+ (with-umlisp-query (mrcon (cui lat ts kluilrl) srl lui lui
:lrl kluilrl :distinct t)
- (make-instance 'uterm :cui (ensure-integer cui) :lui (parse-lui lui)
+ (make-instance 'uterm :cui (ensure-integer cui) :lui lui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-cuilui (cui lui &key (srl *current-srl*))
"Return single uterm for cui/lui"
+ (ensure-cui-integer cui)
+ (ensure-lui-integer lui)
(with-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui
- (make-cuilui (parse-cui cui) (parse-lui lui))
+ (make-cuilui cui lui)
:lrl kluilrl :single t)
(make-instance 'uterm :cui cui :lui lui :lat lat :ts ts
:lrl (ensure-integer kluilrl))))
(defun find-ustr-cuilui (cui lui &key (srl *current-srl*))
"Return a list of ustr for cui/lui"
+ (ensure-cui-integer cui)
+ (ensure-lui-integer lui)
(with-umlisp-query (mrcon (sui stt str lrl) srl kcuilui
(make-cuilui cui lui) :lrl lrl)
(make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui
(defun find-ustr-cuisui (cui sui &key (srl *current-srl*))
"Return the single ustr for cuisui"
+ (ensure-cui-integer cui)
+ (ensure-sui-integer sui)
(with-umlisp-query (mrcon (lui stt str lrl) srl kcuisui
(make-cuisui cui sui) :lrl lrl :single t)
(make-instance 'ustr :sui sui :cui cui :cuisui (make-cuisui cui sui)
(defun find-ustr-sui (sui &key (srl *current-srl*))
"Return the list of ustr for sui"
- (with-umlisp-query (mrcon (cui lui stt str lrl) srl sui (parse-sui sui)
+ (ensure-sui-integer sui)
+ (with-umlisp-query (mrcon (cui lui stt str lrl) srl sui sui
:lrl lrl)
(make-instance 'ustr :sui sui :cui cui :stt stt :str str
- :cuisui (make-cuisui (ensure-integer cui) (parse-sui sui))
+ :cuisui (make-cuisui (ensure-integer cui) sui)
:lui (ensure-integer lui) :lrl (ensure-integer lrl))))
(defun find-ustr-sab (sab &key (srl *current-srl*))
(defun find-string-sui (sui &key (srl *current-srl*))
"Return the string associated with sui"
+ (ensure-sui-integer sui)
(with-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t)
str))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
+ (ensure-sui-integer sui)
+ (ensure-cui-integer cui)
(with-umlisp-query (mrso (sab code srl tty) srl kcuisui
(make-cuisui cui sui) :lrl srl)
(make-instance 'uso :sab sab :code code :srl srl :tty tty)))
(defun find-ucxt-cuisui (cui sui &key (srl *current-srl*))
+ (ensure-cui-integer cui)
+ (ensure-sui-integer sui)
(with-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc)
srl kcuisui (make-cuisui cui sui) :lrl ksrl)
(make-instance 'ucxt :sab sab :code code
:cui2 (ensure-integer cui2))))
(defun find-usat-ui (cui &optional (lui nil) (sui nil) &key (srl *current-srl*))
+ (ensure-cui-integer cui)
+ (ensure-lui-integer lui)
+ (ensure-sui-integer sui)
(let ((ls (format nil "select CODE,ATN,SAB,ATV from MRSAT where ")))
(cond
(sui (string-append ls (format nil "KCUISUI=~D" (make-cuisui cui sui))))
(defun find-usty-tui (tui)
"Find usty for tui"
- (with-umlisp-query (mrsty (sty) nil tui (parse-tui tui) :single t)
- (make-instance 'usty :tui (parse-tui tui) :sty sty)))
+ (ensure-tui-integer tui)
+ (with-umlisp-query (mrsty (sty) nil tui tui :single t)
+ (make-instance 'usty :tui tui :sty sty)))
(defun find-usty-sty (sty)
"Find usty for a sty"
(defun find-ucon-tui (tui &key (srl *current-srl*))
"Find list of ucon for tui"
- (with-umlisp-query (mrsty (cui) srl tui (parse-tui tui) :lrl klrl :order (cui asc))
+ (ensure-tui-integer tui)
+ (with-umlisp-query (mrsty (cui) srl tui tui :lrl klrl :order (cui asc))
(find-ucon-cui (ensure-integer cui) :srl srl)))
(defun find-ucon-word (word &key (srl *current-srl*) (like nil))
;;; LEX SQL functions
(defun find-lexterm-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrwd (wrd) nil eui eui :single t)
(make-instance 'lexterm :eui eui :wrd wrd)))
;; LEX SQL Read functions
(defun find-labr-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui)
(make-instance 'labr :eui eui :bas bas :abr abr :bas2 bas2
:eui2 (ensure-integer eui2))))
:bas (copy-seq bas) :eui2 (ensure-integer eui2))))
(defun find-lagr-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lragr (str sca agr cit bas) nil eui eui)
(make-instance 'lagr :eui eui :str str :sca sca :agr agr
:cit cit :bas bas)))
(defun find-lcmp-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrcmp (bas sca com) nil eui eui)
(make-instance 'lcmp :eui eui :bas bas :sca sca :com com)))
(defun find-lmod-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui)
(make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psn_mod :fea fea)))
(defun find-lnom-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui)
(make-instance 'lnom :eui eui :bas bas :sca sca :bas2 bas2 :sca2 sca2
:eui2 (ensure-integer eui2))))
(defun find-lprn-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui)
(make-instance 'lprn :eui eui :bas bas :num num :gnd gnd
:cas cas :pos pos :qnt qnt :fea fea)))
(defun find-lprp-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrprp (bas str sca fea) nil eui eui)
(make-instance 'lprp :eui eui :bas bas :str str :sca sca :fea fea)))
(defun find-lspl-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrspl (spv bas) nil eui eui)
(make-instance 'lspl :eui eui :spv spv :bas bas)))
(defun find-ltrm-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrtrm (bas gen) nil eui eui)
(make-instance 'ltrm :eui eui :bas bas :gen gen)))
(defun find-ltyp-eui (eui)
+ (ensure-eui-integer eui)
(with-umlisp-query (lrtyp (bas sca typ) nil eui eui)
(make-instance 'ltyp :eui eui :bas bas :sca sca :typ typ)))
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