1 ;;;; -*- Mode: Lisp; Syntax: ANSI-Common-Lisp; Base: 10; Package: umlisp -*-
2 ;;;; *************************************************************************
3 ;;;; FILE IDENTIFICATION
5 ;;;; Name: sql-classes.lisp
6 ;;;; Purpose: Routines for reading UMLS objects from SQL database
7 ;;;; Author: Kevin M. Rosenberg
10 ;;;; This file, part of UMLisp, is
11 ;;;; Copyright (c) 2000-2010 by Kevin M. Rosenberg, M.D.
13 ;;;; UMLisp users are granted the rights to distribute and use this software
14 ;;;; as governed by the terms of the GNU General Public License.
15 ;;;; *************************************************************************
20 (defvar *current-srl* nil)
23 (defun set-current-srl (srl)
24 (setq *current-srl* srl))
26 ;; SQLNAME is required for collision of SQL reserved words (MYSQL 8: RANK)
27 ;; and column names in UMLS (RANK in MRRANK)
28 (defvar *sql-reserved-names* '("RANK"))
29 (defmethod sqlname ((c ucol))
31 (defmethod sqlname ((name string))
32 (if (find name *sql-reserved-names* :test #'string-equal)
33 (concatenate 'string "_" name)
35 (defmethod sqlname ((l list))
37 (defmethod sqlname ((s symbol))
38 (sqlname (symbol-name s)))
40 (defmacro query-string (table fields srl where-name where-value
41 &key (lrl "KCUILRL") single distinct order like limit
43 (let* ((%%fields (format nil "SELECT ~A~{~:@(~A~)~^,~} FROM ~:@(~A~)"
44 (if distinct "DISTINCT " "") (sqlname fields) table))
45 (%%order (if order (format nil " ORDER BY ~{~:@(~A~) ~(~A~)~^,~}"
48 (%%lrl (format nil " AND ~:@(~A~)<=" lrl))
49 (%%where (when where-name
50 (format nil " WHERE ~:@(~A~)~A" (sqlname where-name)
51 (if like " like " ""))))
52 (%filter (gensym "FILTER-"))
53 (%single (gensym "SINGLE-"))
54 (%limit (gensym "LIMIT-")))
55 `(let ((,%limit ,limit)
61 ,@(when %%where (list %%where))
63 `((typecase ,where-value
66 (concatenate 'string "='" (prefixed-fixnum-string ,where-value #\0 10) "'"))
68 (concatenate 'string "='" (write-to-string ,where-value) "'"))
72 (format nil ,(if like "'%~A%'" "='~A'") ,where-value)))))
73 (if ,%filter (concatenate 'string
74 ,(if %%where " AND " " WHERE ")
76 (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "")
77 ,@(when %%order (list %%order))
79 ((and ,%single ,%limit)
80 (error "Can't set single (~S) and limit (~S)" ,%single ,%limit))
84 (format nil " LIMIT ~D" ,%limit))
88 (defun query-string-eval (table fields srl where-name where-value
89 &key (lrl "KCUILRL") single distinct order like limit filter)
90 (when single (setq limit 1))
93 (format nil "SELECT ~A~{~:@(~A~)~^,~} FROM ~:@(~A~)"
94 (if distinct "DISTINCT " "") (sqlname fields) table)
95 (if where-name (format nil " WHERE ~:@(~A~)" (sqlname where-name)) "")
102 (if like " LIKE '%~A%'" "='~A'")))
105 (if filter (concatenate 'string " AND " filter) nil)
106 (if srl (format nil " AND ~:@(~A~)<=~D" lrl srl) "")
107 (if order (format nil " ORDER BY ~{~:@(~A~) ~(~A~)~^,~}" order) "")
108 (if limit (format nil " LIMIT ~D" limit) "")))
111 (defmacro umlisp-query (table fields srl where-name where-value
112 &key (lrl "KCUILRL") single distinct order like
113 limit filter (query-cmd 'mutex-sql-query))
114 "Query the UMLisp database. Return a list of umlisp objects whose name
115 is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
117 (query-string ,table ,fields ,srl ,where-name ,where-value
118 :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like
119 :filter ,filter :limit ,limit)))
121 (defmacro umlisp-query-eval (table fields srl where-name where-value
122 &key (lrl "KCUILRL") single distinct order like
124 "Query the UMLisp database. Return a list of umlisp objects whose name
125 is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
127 (query-string-eval ,table ,fields ,srl ,where-name ,where-value
128 :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like
129 :filter ,filter :limit ,limit)))
131 ;; only WHERE-VALUE and SRL are evaluated
132 (defmacro collect-umlisp-query ((table fields srl where-name where-value
133 &key (lrl "KCUILRL") distinct single
134 order like (query-cmd 'mutex-sql-query)
137 (let ((value (gensym))
140 (if (and limit (> limit 1))
141 (error "Can't set limit along with single.")
142 `(let* ((,value ,where-value)
143 (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value
144 :lrl ,lrl :single ,single
145 :distinct ,distinct :order ,order
146 :like ,like :filter ,filter
147 :query-cmd ,query-cmd))))
148 ,@(unless where-name `((declare (ignore ,value))))
150 (destructuring-bind ,fields tuple
152 `(let ((,value ,where-value))
153 ,@(unless where-name `((declare (ignore ,value))))
155 (dolist (tuple (umlisp-query ,table ,fields ,srl ,where-name ,value
156 :lrl ,lrl :single ,single :distinct ,distinct
157 :order ,order :filter ,filter :like ,like
159 (push (destructuring-bind ,fields tuple ,@body) ,r))
163 (umlisp-query ,table ,fields ,srl ,where-name ,value
164 :lrl ,lrl :single ,single :distinct ,distinct
165 :order ,order :like ,like :filter ,filter :limit ,limit)
166 collect (destructuring-bind ,fields tuple ,@body))))))
168 (defmacro collect-umlisp-query-eval ((table fields srl where-name where-value
169 &key (lrl "KCUILRL") distinct single
170 order like filter limit)
172 (let ((value (gensym))
174 (eval-fields (cadr fields)))
176 `(let* ((,value ,where-value)
177 (tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
178 :lrl ,lrl :single ,single
179 :distinct ,distinct :order ,order
180 :like ,like :filter ,filter
183 (destructuring-bind ,eval-fields tuple
185 `(let ((,value ,where-value)
187 (dolist (tuple (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
188 :lrl ,lrl :single ,single :distinct ,distinct
189 :order ,order :like ,like
190 :filter ,filter :limit ,limit))
191 (push (destructuring-bind ,eval-fields tuple ,@body) ,r))
195 (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
196 :lrl ,lrl :single ,single :distinct ,distinct
197 :order ,order :like ,like :filter ,filter
199 collect (destructuring-bind ,eval-fields tuple ,@body))))))
202 ;;; Read from SQL database
204 (defmacro ensure-cui-integer (cui)
206 (setq ,cui (parse-cui ,cui))
209 (defmacro ensure-lui-integer (lui)
211 (setq ,lui (parse-lui ,lui))
214 (defmacro ensure-sui-integer (sui)
216 (setq ,sui (parse-sui ,sui))
219 (defmacro ensure-aui-integer (aui)
221 (setq ,aui (parse-aui ,aui))
224 (defmacro ensure-rui-integer (rui)
226 (setq ,rui (parse-rui ,rui))
229 (defmacro ensure-tui-integer (tui)
231 (setq ,tui (parse-tui ,tui))
234 (defmacro ensure-eui-integer (eui)
236 (setq ,eui (parse-eui ,eui))
239 (defun make-ucon-cui (cui)
240 (ensure-cui-integer cui)
242 (make-instance 'ucon :cui cui)))
244 (defun find-ucon-cui (cui &key (srl *current-srl*) without-pfstr)
245 "Find ucon for a cui. If set SAB, the without-pfstr is on by default"
246 (ensure-cui-integer cui)
247 (unless cui (return-from find-ucon-cui nil))
250 (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t)
251 (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl)
254 (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t :filter "KPFENG=1")
255 (make-instance 'ucon :cui cui :pfstr str
257 (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t)
258 (make-instance 'ucon :cui cui :pfstr str
261 (defun find-uconso-cui (cui &key sab (srl *current-srl*))
262 "Find uconso for a cui."
263 (ensure-cui-integer cui)
264 (unless cui (return-from find-uconso-cui nil))
266 (collect-umlisp-query (mrconso (lat ts lui stt sui ispref aui saui scui sdui sab tty code str
267 srl suppress cvf kpfeng kcuisui kcuilui kcuilrl
268 kluilrl ksuilrl) srl cui cui
269 :filter (if sab (concatenate 'string "SAB='" sab "'") nil))
270 (make-instance 'uconso :cui cui :lat lat :ts ts :lui lui :stt stt :sui sui :ispref ispref
271 :aui aui :saui saui :scui scui :sdui sdui :sab sab :tty tty :code code
272 :str str :srl srl :suppress suppress :cvf cvf :kpfeng kpfeng
273 :kcuisui kcuisui :kcuilui kcuilui :kcuilrl kcuilrl :kluilrl kluilrl
276 (defun find-uconso-cuisui (cuisui &key sab (srl *current-srl*))
277 "Find uconso for a cuisui."
278 (collect-umlisp-query (mrconso (cui lat ts lui stt sui ispref aui saui scui sdui sab tty code str
279 srl suppress cvf kpfeng kcuisui kcuilui kcuilrl
280 kluilrl ksuilrl) srl kcuisui cuisui
281 :filter (if sab (concatenate 'string "SAB='" sab "'") nil))
282 (make-instance 'uconso :cui cui :lat lat :ts ts :lui lui :stt stt :sui sui :ispref ispref
283 :aui aui :saui saui :scui scui :sdui sdui :sab sab :tty tty :code code
284 :str str :srl srl :suppress suppress :cvf cvf :kpfeng kpfeng
285 :kcuisui kcuisui :kcuilui kcuilui :kcuilrl kcuilrl :kluilrl kluilrl
289 (defun find-uconso-code (code &key first sab (srl *current-srl*) (like nil))
290 "Return list of uconso objects that match code. Optional, filter for SAB. Optionally, use SQL's LIKE syntax"
291 (collect-umlisp-query (mrconso (cui sab) srl code code :like like :distinct t
293 :filter (if sab (concatenate 'string "SAB='" sab "'") nil))
294 (let ((uconsos (find-uconso-cui cui :sab sab :srl srl)))
299 (defun find-uconso-sui (sui &key sab (srl *current-srl*))
300 "Find uconso for a sui. If set SAB, the without-pfstr is on by default"
301 (ensure-sui-integer sui)
302 ;; (unless (and sui (stringp sab))
304 (return-from find-uconso-sui nil))
306 (collect-umlisp-query (mrconso (cui lat ts lui stt sui ispref aui saui scui sdui sab tty code str
307 srl suppress cvf kpfeng kcuisui kcuilui kcuilrl
308 kluilrl ksuilrl) srl sui sui
310 :filter (if sab (concatenate 'string "SAB='" sab "'") nil))
311 (make-instance 'uconso :cui cui :lat lat :ts ts :lui lui :stt stt :sui sui :ispref ispref
312 :aui aui :saui saui :scui scui :sdui sdui :sab sab :tty tty :code code
313 :str str :srl srl :suppress suppress :cvf cvf :kpfeng kpfeng
314 :kcuisui kcuisui :kcuilui kcuilui :kcuilrl kcuilrl :kluilrl kluilrl
317 (defun find-pfstr-cui (cui &key (srl *current-srl*))
318 "Find preferred string for a cui"
319 (ensure-cui-integer cui)
321 (collect-umlisp-query (mrconso (str) srl cui cui :distinct t
322 :filter " KPFENG=1" :single t)
324 (collect-umlisp-query (mrconso (str) srl cui cui :distinct t
328 (defun find-lrl-cui (cui &key (srl *current-srl*))
330 (ensure-cui-integer cui)
331 (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :distinct t :single t)
332 (ensure-integer kcuilrl)))
334 (defun find-ucon-lui (lui &key (srl *current-srl*))
335 "Find list of ucon for lui"
336 (ensure-lui-integer lui)
337 (unless lui (return-from find-ucon-lui nil))
339 (collect-umlisp-query (mrconso (cui kcuilrl str) srl lui lui
340 :filter " KPFENG=1" :single t)
341 (make-instance 'ucon :cui (ensure-integer cui)
342 :pfstr str :lrl (ensure-integer kcuilrl)))
343 (collect-umlisp-query (mrconso (cui kcuilrl str) srl lui lui
345 (make-instance 'ucon :cui (ensure-integer cui)
346 :pfstr str :lrl (ensure-integer kcuilrl)))))
348 (defun find-ucon-sui (sui &key (srl *current-srl*))
349 "Find list of ucon for sui"
350 (ensure-sui-integer sui)
351 (collect-umlisp-query (mrconso (cui kcuilrl) srl sui sui :distinct t)
352 (make-instance 'ucon :cui (ensure-integer cui) :pfstr (find-pfstr-cui cui)
353 :lrl (ensure-integer kcuilrl))))
355 (defun find-ucon-aui (aui &key (srl *current-srl*))
356 "Find list of ucon for aui"
357 (ensure-aui-integer aui)
358 (collect-umlisp-query (mrconso (cui kcuilrl) srl aui aui :distinct t)
359 (make-instance 'ucon :cui (ensure-integer cui) :pfstr (find-pfstr-cui cui)
360 :lrl (ensure-integer kcuilrl))))
362 (defun find-ucon-cuisui (cuisui &key (srl *current-srl*))
363 "Find ucon for cui/sui"
364 (collect-umlisp-query (mrconso (cui kcuilrl) srl kcuisui cuisui)
365 (make-instance 'ucon :cui cui
366 :pfstr (find-pfstr-cui cui)
367 :lrl (ensure-integer kcuilrl))))
369 (defun find-ucon-cui-sui (cui sui &key (srl *current-srl*))
370 "Find ucon for cui/sui"
371 (ensure-cui-integer cui)
372 (ensure-sui-integer sui)
374 (find-ucon-cui-sui cui sui :srl srl)))
376 (defun find-ucon-str (str &key (srl *current-srl*))
377 "Find ucon that are exact match for str"
378 (collect-umlisp-query (mrconso (cui kcuilrl) srl str str :distinct t)
379 (make-instance 'ucon :cui (ensure-integer cui) :pfstr (find-pfstr-cui cui)
380 :lrl (ensure-integer kcuilrl))))
382 (defun find-ucon-all (&key (srl *current-srl*))
383 "Return list of all ucon's"
384 (with-sql-connection (db)
388 (destructuring-bind (cui cuilrl) tuple
389 (make-instance 'ucon :cui (ensure-integer cui)
390 :pfstr (find-pfstr-cui cui)
391 :lrl (ensure-integer cuilrl))))
392 (query-string mrconso (cui kcuilrl) srl nil nil
393 :order (cui asc) :distinct t)
396 (defun find-ucon-all2 (&key (srl *current-srl*))
397 "Return list of all ucon's"
398 (collect-umlisp-query (mrconso (cui kcuilrl) srl nil nil :order (cui asc)
400 (make-instance 'ucon :cui (ensure-integer cui)
401 :pfstr (find-pfstr-cui cui)
402 :lrl (ensure-integer kcuilrl))))
404 (defun find-cui-ucon-all (&key (srl *current-srl*))
405 "Return list of CUIs for all ucons"
406 (collect-umlisp-query (mrconso (cui) srl nil nil :order (cui asc)
410 (defun map-ucon-all (fn &key (srl *current-srl*))
411 "Map a function over all ucon's"
412 (with-sql-connection (db)
416 (destructuring-bind (cui cuilrl) tuple
417 (funcall fn (make-instance 'ucon :cui (ensure-integer cui)
418 :pfstr (find-pfstr-cui cui)
419 :lrl (ensure-integer cuilrl)))))
420 (query-string mrconso (cui kcuilrl) srl nil nil :order (cui asc)
425 (defun find-udef-cui (cui &key (srl *current-srl*))
426 "Return a list of udefs for cui"
427 (ensure-cui-integer cui)
428 (collect-umlisp-query (mrdef (sab def suppress) srl cui cui :lrl "KSRL"
430 (make-instance 'udef :sab sab :def def :suppress suppress)))
432 (defun find-udoc-key (key)
433 "Return list of abbreviation documentation for a key"
434 (collect-umlisp-query (mrdoc (value type expl) nil dockey key)
435 (make-instance 'udoc :dockey key :dvalue value :dtype type :expl expl)))
437 (defun find-udoc-value (value)
438 "Return abbreviation documentation"
439 (collect-umlisp-query (mrdoc (dockey type expl) nil value value)
440 (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl)))
442 (defun find-udoc-key-value (dockey value)
443 (collect-umlisp-query (mrdoc (type expl) nil dockey dockey :filter (format nil "VALUE='~A'" value))
444 (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl)))
446 (defun find-udoc-all ()
447 "Return all abbreviation documentation"
448 (collect-umlisp-query (mrdoc (dockey value type expl) nil nil nil)
449 (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl)))
451 (defun find-usty-cui (cui &key (srl *current-srl*))
452 "Return a list of usty for cui"
453 (ensure-cui-integer cui)
454 (collect-umlisp-query (mrsty (tui sty) srl cui cui :lrl "KLRL")
455 (make-instance 'usty :tui (ensure-integer tui) :sty sty)))
457 (defun find-usty-word (word &key (srl *current-srl*))
458 "Return a list of usty that match word"
459 (collect-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t
461 (make-instance 'usty :tui (ensure-integer tui) :sty sty)))
463 (defun find-urel-cui (cui &key (srl *current-srl*) filter without-pfstr2)
464 "Return a list of urel for cui"
465 (ensure-cui-integer cui)
466 (collect-umlisp-query (mrrel (aui1 rel stype1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
467 srl cui1 cui :lrl "KSRL" :filter filter)
469 (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
470 :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2
471 :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
472 :suppress suppress :cvf cvf)))
473 (unless without-pfstr2
474 (setf (slot-value rel 'pfstr2) (find-pfstr-cui cui2)))
477 (defun find-urel-rui (rui &key (srl *current-srl*))
478 "Return the urel for a rui"
479 (ensure-rui-integer rui)
480 (collect-umlisp-query (mrrel (aui1 rel stype1 cui1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
481 srl rui rui :lrl "KSRL" :single t)
482 (make-instance 'urel :cui1 cui1 :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
483 :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2
484 :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
485 :suppress suppress :cvf cvf :pfstr2 (find-pfstr-cui cui2))))
487 (defun find-cui2-urel-cui (cui &key (srl *current-srl*))
488 "Return a list of urel for cui"
489 (ensure-cui-integer cui)
490 (collect-umlisp-query (mrrel (cui2) srl cui1
494 (defun find-urel-cui2 (cui2 &key (srl *current-srl*))
495 "Return a list of urel for cui2"
496 (ensure-cui-integer cui2)
497 (collect-umlisp-query (mrrel (rel cui1 aui1 stype1 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
498 srl cui2 cui2 :lrl "KSRL")
499 (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2)
500 :stype2 stype2 :rui (ensure-integer rui) :srui srui
501 :stype1 stype1 :cui1 (ensure-integer cui1)
502 :aui1 (ensure-integer aui1)
503 :rela rela :sab sab :sl sl :rg rg :dir dir :suppress suppress :cvf cvf
504 :pfstr2 (find-pfstr-cui cui2))))
506 (defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*))
507 (ensure-cui-integer cui2)
508 (loop for cui in (remove-duplicates
509 (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl)))
510 collect (find-ucon-cui cui :srl srl)))
512 #+mrcoc (defun find-ucoc-cui (cui &key (srl *current-srl*))
513 "Return a list of ucoc for cui"
514 (ensure-cui-integer cui)
515 (collect-umlisp-query (mrcoc (aui1 cui2 aui2 sab cot cof coa) srl cui1
516 cui :lrl klrl :order (cof asc))
517 (setq cui2 (ensure-integer cui2))
518 (when (eql 0 cui2) (setq cui2 nil))
519 (make-instance 'ucoc :cui1 cui :aui1 (ensure-integer aui1)
520 :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2)
521 :cot cot :cof (ensure-integer cof) :coa coa :sab sab
522 :pfstr2 (find-pfstr-cui cui2))))
524 #+mrcoc (defun find-ucoc-cui2 (cui2 &key (srl *current-srl*))
525 "Return a list of ucoc for cui2"
526 (ensure-cui-integer cui2)
527 (collect-umlisp-query (mrcoc (cui1 aui1 aui2 sab cot cof coa) srl cui2
528 cui2 :lrl klrl :order (cof asc))
529 (when (zerop cui2) (setq cui2 nil))
530 (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 cui2
531 :aui1 (ensure-integer aui1) :aui2 (ensure-integer aui2)
532 :sab sab :cot cot :cof (ensure-integer cof) :coa coa
533 :pfstr2 (find-pfstr-cui cui2))))
535 #+mrcoc (defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*))
536 "List of ucon with co-occurance cui2"
537 (ensure-cui-integer cui2)
539 #'(lambda (cui) (find-ucon-cui cui :srl srl))
540 (remove-duplicates (mapcar #'cui1 (find-ucoc-cui2 cui2 :srl srl)))))
543 (defun find-uterm-cui (cui &key (srl *current-srl*))
544 "Return a list of uterm for cui"
545 (ensure-cui-integer cui)
546 (collect-umlisp-query (mrconso (lui lat ts kluilrl) srl cui cui
547 :lrl kluilrl :distinct t)
548 (make-instance 'uterm :lui (ensure-integer lui) :cui cui
549 :lat lat :ts ts :lrl (ensure-integer kluilrl))))
551 (defun find-uterm-lui (lui &key (srl *current-srl*))
552 "Return a list of uterm for lui"
553 (ensure-lui-integer lui)
554 (collect-umlisp-query (mrconso (cui lat ts kluilrl) srl lui lui
555 :lrl kluilrl :distinct t)
556 (make-instance 'uterm :cui (ensure-integer cui) :lui lui
557 :lat lat :ts ts :lrl (ensure-integer kluilrl))))
559 (defun find-uterm-cuilui (cui lui &key (srl *current-srl*))
560 "Return single uterm for cui/lui"
561 (ensure-cui-integer cui)
562 (ensure-lui-integer lui)
563 (collect-umlisp-query (mrconso (lat ts kluilrl) srl kcuilui
564 (make-cuilui cui lui)
565 :lrl kluilrl :single t)
566 (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts
567 :lrl (ensure-integer kluilrl))))
569 (defun find-ustr-cuilui (cui lui &key (srl *current-srl*))
570 "Return a list of ustr for cui/lui"
571 (ensure-cui-integer cui)
572 (ensure-lui-integer lui)
573 (collect-umlisp-query (mrconso (sui stt str suppress ksuilrl) srl kcuilui
574 (make-cuilui cui lui) :lrl ksuilrl :distinct t)
575 (make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui
576 :cuisui (make-cuisui cui sui) :stt stt :str str :suppress suppress
577 :lrl (ensure-integer ksuilrl))))
579 (defun find-ustr-cuisui (cuisui &key (srl *current-srl*))
580 "Return the single ustr for cuisui"
581 (collect-umlisp-query (mrconso (cui lui sui stt str suppress ksuilrl) srl kcuisui
582 cuisui :lrl ksuilrl :single t)
583 (make-instance 'ustr :sui sui :cui cui :cuisui cuisui
584 :lui (ensure-integer lui) :stt stt :str str :suppress suppress
585 :lrl (ensure-integer ksuilrl))))
587 (defun find-ustr-cui-sui (cui sui &key (srl *current-srl*))
588 "Return the single ustr for cuisui"
589 (ensure-cui-integer cui)
590 (ensure-sui-integer sui)
591 (find-ustr-cuisui (make-cuisui cui sui) :srl srl))
593 (defun find-ustr-sui (sui &key (srl *current-srl*))
594 "Return the list of ustr for sui"
595 (ensure-sui-integer sui)
596 (collect-umlisp-query (mrconso (cui lui stt str suppress ksuilrl) srl sui sui
597 :lrl ksuilrl :distinct t)
598 (make-instance 'ustr :sui sui :cui cui :stt stt :str str
599 :cuisui (make-cuisui (ensure-integer cui) sui)
601 :lui (ensure-integer lui) :lrl (ensure-integer ksuilrl))))
603 (defun find-ustr-sab (sab &key (srl *current-srl*))
604 "Return the list of ustr for sab"
605 (collect-umlisp-query (mrconso (kcuisui) srl sab sab :lrl srl)
606 (let ((cuisui (ensure-integer kcuisui)))
607 (find-ustr-cuisui cuisui :srl srl))))
609 (defun find-ustr-all (&key (srl *current-srl*))
610 "Return list of all ustr's"
611 (with-sql-connection (db)
615 (destructuring-bind (cui lui sui stt ksuilrl suppress) tuple
616 (make-instance 'ustr :cui (ensure-integer cui)
617 :lui (ensure-integer lui) :sui (ensure-integer sui)
618 :stt stt :str (find-pfstr-cui cui)
619 :cuisui (make-cuisui (ensure-integer cui)
620 (ensure-integer sui))
622 :lrl (ensure-integer ksuilrl))))
623 (query-string mrconso (cui lui sui stt ksuilrl) srl nil nil :lrl ksuilrl
628 (defun find-string-sui (sui &key (srl *current-srl*))
629 "Return the string associated with sui"
630 (ensure-sui-integer sui)
631 (collect-umlisp-query (mrconso (str) srl sui sui :lrl ksuilrl :single t)
634 (defun find-uso-cuisui (cui sui &key (srl *current-srl*))
635 (ensure-sui-integer sui)
636 (ensure-cui-integer cui)
637 (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str ts)
638 srl kcuisui (make-cuisui cui sui) :lrl srl)
639 (make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty
640 :cui cui :sui sui :saui saui :sdui sdui :scui scui
641 :lat lat :str str :ts ts)))
643 (defun find-uso-cui (cui &key (srl *current-srl*) (english-only nil) limit)
644 (ensure-cui-integer cui)
645 (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str sui ts)
646 srl cui cui :lrl srl :limit limit
647 :filter (when english-only "LAT='ENG'"))
648 (make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty
649 :cui cui :sui sui :saui saui :sdui sdui :scui scui
650 :lat lat :str str :ts ts)))
652 (defun find-uso-aui (aui &key (srl *current-srl*))
653 (ensure-sui-integer aui)
654 (collect-umlisp-query (mrconso (sab cui sui code srl tty saui sdui scui lat
655 str ts) srl aui aui :lrl srl :single t)
656 (make-instance 'uso :aui aui :cui cui :sab sab :code code :srl srl :tty tty
657 :sui sui :saui saui :sdui sdui :scui scui :lat lat
660 (defun find-uhier-cui (cui &key (srl *current-srl*))
661 (ensure-cui-integer cui)
662 (collect-umlisp-query (mrhier (aui cxn paui sab rela ptr hcd cvf)
663 srl cui cui :lrl ksrl)
664 (make-instance 'uhier :cui cui :aui (ensure-integer aui)
665 :cxn (ensure-integer cxn)
666 :paui (ensure-integer paui)
667 :sab sab :rela rela :ptr ptr :hcd hcd :cvf cvf)))
669 (defun find-uhier-all (&key (srl *current-srl*))
670 (collect-umlisp-query (mrhier (cui aui cxn paui sab rela ptr hcd cvf)
671 srl nil nil :lrl ksrl)
672 (make-instance 'uhier :cui cui :aui (ensure-integer aui)
673 :cxn (ensure-integer cxn)
674 :paui (ensure-integer paui)
675 :sab sab :rela rela :ptr ptr :hcd hcd :cvf cvf)))
677 (defun find-usat-ui (cui &optional lui sui &key (srl *current-srl*))
678 (ensure-cui-integer cui)
679 (ensure-lui-integer lui)
680 (ensure-sui-integer sui)
681 (let ((ls "SELECT CODE,ATN,SAB,ATV FROM MRSAT WHERE "))
683 (sui (string-append ls "KCUISUI='"
684 (integer-string (make-cuisui cui sui) 14)
686 (lui (string-append ls "KCUILUI='"
687 (integer-string (make-cuilui cui lui) 14)
689 (t (string-append ls "cui='" (prefixed-fixnum-string cui nil 7)
690 "' and lui='0' and sui='0'")))
692 (string-append ls " and KSRL<=" (prefixed-fixnum-string srl nil 3)))
693 (loop for tuple in (mutex-sql-query ls) collect
694 (destructuring-bind (code atn sab atv) tuple
695 (make-instance 'usat :code code :atn atn :sab sab :atv atv)))))
697 (defun find-usty-tui (tui)
699 (ensure-tui-integer tui)
700 (collect-umlisp-query (mrsty (sty) nil tui tui :single t)
701 (make-instance 'usty :tui tui :sty sty)))
703 (defun find-usty-sty (sty)
704 "Find usty for a sty"
705 (collect-umlisp-query (mrsty (tui) nil sty sty :single t)
706 (make-instance 'usty :tui (ensure-integer tui) :sty sty)))
708 (defun find-usty-all ()
709 "Return list of usty's for all semantic types"
710 (collect-umlisp-query (mrsty (tui) nil nil nil :distinct t)
711 (find-usty-tui tui)))
713 (defun find-usab-all ()
714 "Return all usab objects"
715 (collect-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver vstart vend imeta
716 rmeta slc scc srl tfr cfr cxty ttyl atnl lat
717 cenc curver sabin ssn scit) nil nil nil)
718 (make-instance 'usab :vcui (ensure-integer vcui)
719 :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
720 :sf sf :sver sver :vstart vstart :vend vend :imeta imeta
721 :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
722 :tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
723 :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
724 :curver curver :sabin sabin :ssn ssn :scit scit)))
726 (defun find-usab-by-key (key-name key &key current)
727 "Find usab for a key"
728 (collect-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver vstart
729 vend imeta rmeta slc scc srl tfr cfr cxty
730 ttyl atnl lat cenc curver sabin
732 nil key-name key :single t
733 :filter (when current "RMETA=''"))
734 (make-instance 'usab :vcui (ensure-integer vcui)
735 :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
736 :sf sf :sver sver :vstart vstart :vend vend :imeta imeta
737 :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
738 :tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
739 :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
740 :curver curver :sabin sabin
741 :ssn ssn :scit scit)))
743 (defun find-usab-rsab (rsab &key (current t))
745 (find-usab-by-key 'rsab rsab))
747 (defun find-usab-vsab (vsab &key (current t))
749 (find-usab-by-key 'vsab vsab))
751 (defun find-cui-max ()
752 (ensure-integer (caar (mutex-sql-query "select max(CUI) from MRCON"))))
754 (defun find-umap-cui (cui)
755 (ensure-cui-integer cui)
756 (collect-umlisp-query (mrmap (mapsetsab mapsubsetid maprank fromid fromsid fromexpr
757 fromtype fromrule fromres rel rela toid tosid
758 toexpr totype torule tores maprule maptype
761 (make-instance 'umap :mapsetcui cui :mapsetsab mapsetsab :mapsubsetid mapsubsetid
762 :maprank (ensure-integer maprank) :fromid fromid :fromsid fromsid
763 :fromexpr fromexpr :fromtype fromtype :fromrule fromrule :fromres fromres
764 :rel rel :rela rela :toid toid :tosid tosid :toexpr toexpr :totype totype
765 :torule torule :tores tores :maprule maprule :maptype maptype :mapatn mapatn
766 :mapatv mapatv :cvf cvf)))
768 (defun find-usmap-cui (cui)
769 (ensure-cui-integer cui)
770 (collect-umlisp-query (mrsmap (mapsetsab fromexpr fromtype rel rela toexpr totype cvf)
772 (make-instance 'usmap :mapsetcui cui :mapsetsab mapsetsab
773 :fromexpr fromexpr :fromtype fromtype
774 :rel rel :rela rela :toexpr toexpr :totype totype
777 ;;;; Cross table find functions
779 (defun find-ucon-tui (tui &key (srl *current-srl*))
780 "Find list of ucon for tui"
781 (ensure-tui-integer tui)
782 (collect-umlisp-query (mrsty (cui) srl tui tui :lrl klrl :order (cui asc))
783 (find-ucon-cui (ensure-integer cui) :srl srl)))
785 (defun mrconso-query-word-cui (word sab srl like)
786 (format nil "SELECT DISTINCT c.cui FROM MRCONSO c,MRXW_ENG x WHERE x.WD~A'~A' AND x.cui=c.cui~A~A"
787 (if like " LIKE " "=")
788 (clsql-sys::sql-escape-quotes word)
791 (format nil " AND c.sab='~A'" (clsql-sys::sql-escape-quotes sab)))
793 (format nil " AND c.sab IN (~{'~A'~^,~})"
794 (mapcar 'clsql-sys::sql-escape-quotes sab)))
797 (if srl (format nil " AND KCUILRL <= ~A" srl) "")))
799 (defun mrconso-query-word-sui (word sab srl like)
800 (format nil "SELECT DISTINCT c.sui FROM MRCONSO c,MRXW_ENG x WHERE x.WD~A'~A' AND x.sui=c.sui~A~A"
801 (if like " LIKE " "=")
802 (clsql-sys::sql-escape-quotes word)
805 (format nil " AND c.sab='~A'" (clsql-sys::sql-escape-quotes sab)))
807 (format nil " AND c.sab IN (~{'~A'~^,~})"
808 (mapcar 'clsql-sys::sql-escape-quotes sab)))
811 (if srl (format nil " AND KCUILRL <= ~A" srl) "")))
813 (defun find-uconso-word (word &key sab (srl *current-srl*) (like nil))
814 "Return list of uconso that match word. Optionally, matching SAB. Optionally, use SQL's LIKE syntax"
817 (let ((sui-query (mrconso-query-word-sui word sab srl like))
819 (dolist (sui (remove-duplicates (sort (mapcar 'car (mutex-sql-query sui-query)) #'<)))
820 (setq uconsos (nconc uconsos (find-uconso-sui sui :sab sab))))
821 (remove-duplicates uconsos :key 'cui)))
823 (collect-umlisp-query-eval ('mrxw_eng '(kcuisui) srl 'wd word :like like
824 :lrl 'klrl :order '(kcuisui asc))
825 (find-uconso-cuisui kcuisui :srl srl)))))
827 (defun find-ucon-word (word &key sab (srl *current-srl*) (like nil))
828 "Return list of ucon that match word in matching SAB. Optionally, use SQL's LIKE syntax"
831 (let ((query (mrconso-query-word-cui word sab srl like)))
832 (loop for tuple in (mutex-sql-query query)
833 collect (make-instance 'ucon :cui (first tuple)))))
835 (collect-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t
836 :lrl 'klrl :order '(cui asc))
837 (find-ucon-cui cui :srl srl)))))
839 (defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil))
840 "Return list of ucons that match word, optionally use SQL's LIKE syntax"
841 (collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
842 :lrl 'klrl :order '(cui asc))
843 (find-ucon-cui cui :srl srl)))
845 (defun find-cui-normalized-word (word &key (srl *current-srl*) (like nil))
846 "Return list of cui that match word, optionally use SQL's LIKE syntax"
847 (collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
848 :lrl 'klrl :order '(cui asc))
851 (defun find-lui-normalized-word (word &key (srl *current-srl*) (like nil))
852 "Return list of cui that match word, optionally use SQL's LIKE syntax"
853 (collect-umlisp-query-eval ('mrxnw_eng '(lui) srl 'nwd word :like like :distinct t
854 :lrl 'klrl :order '(cui asc))
857 (defun find-sui-normalized-word (word &key (srl *current-srl*) (like nil))
858 "Return list of cui that match word, optionally use SQL's LIKE syntax"
859 (collect-umlisp-query-eval ('mrxnw_eng '(sui) srl 'nwd word :like like :distinct t
860 :lrl 'klrl :order '(cui asc))
863 (defun find-ustr-word (word &key sab (srl *current-srl*) (like nil))
864 "Return list of ustr that match word in matching SAB. Optionally, use SQL's LIKE syntax"
867 (let ((query (format nil "SELECT c.sui,c.cui,c.lui,c.str,c.lrl,c.stt,c.suppress,c.cuisui FROM MRCONSO c,MRXW_ENG x WHERE x.WD ~A '~A' AND x.cui=c.cui AND x.lui=c.lui AND x.sui=c.sui~A~A"
869 (clsql-sys::sql-escape-quotes word)
872 (format nil " AND c.sab='~A'" (clsql-sys::sql-escape-quotes sab)))
874 (format nil " AND c.sab IN (~('~A'~^,~))"
875 (mapcar 'clsql-sys::sql-escape-quotes sab)))
878 (if srl (format nil " AND KCUILRL <= ~D" srl) ""))))
879 (loop for tuple in (mutex-sql-query query)
880 collect (destructuring-bind (sui cui lui str lrl stt suppress cuisui) tuple
881 (make-instance 'ustr :sui sui :cui cui :lui lui :str str :lrl lrl
882 :stt stt :suppress suppress :cuisui cuisui)))))
884 (collect-umlisp-query (mrxw_eng (kcuisui) srl wd word :lrl klrl
885 :order (cui asc sui asc))
886 (find-ustr-cuisui kcuisui :srl srl)))))
888 (defun find-ustr-normalized-word (word &key (srl *current-srl*))
889 "Return list of ustrs that match word"
890 (collect-umlisp-query (mrxnw_eng (kcuisui) srl nwd word :lrl klrl
891 :order (cui asc sui asc))
892 (find-ustr-cuisui kcuisui :srl srl)))
894 (defun find-uterm-word (word &key (srl *current-srl*))
895 "Return list of uterms that match word"
896 (collect-umlisp-query (mrxw_eng (cui lui) srl wd word :lrl klrl
897 :order (cui asc lui asc))
898 (find-uterm-cuilui (ensure-integer cui) (ensure-integer lui) :srl srl)))
900 (defun find-uterm-normalized-word (word &key (srl *current-srl*))
901 "Return list of uterms that match word"
902 (collect-umlisp-query (mrxnw_eng (cui lui) srl nwd word :lrl klrl
903 :order (cui asc lui asc))
904 (find-uterm-cuilui (ensure-integer cui) (ensure-integer lui) :srl srl)))
906 (defun find-ucon-noneng-word (word &key (srl *current-srl*) (like nil))
907 "Return list of ucons that match non-english word"
908 (collect-umlisp-query-eval ('mrxw_noneng '(cui) srl 'wd word :like like
909 :distinct t :lrl 'klrl :order '(cui asc))
910 (find-ucon-cui cui :srl srl)))
912 (defun find-ustr-noneng-word (word &key (srl *current-srl*))
913 "Return list of ustrs that match non-english word"
914 (collect-umlisp-query (mrxw_noneng (kcuisui) srl wd word :lrl klrl
915 :order (cui asc sui asc))
916 (find-ustr-cuisui kcuisui :srl srl)))
920 (defun find-usrl-all ()
921 (collect-umlisp-query (usrl (sab srl) nil nil nil :order (sab asc))
922 (make-instance 'usrl :sab sab :srl (ensure-integer srl))))
924 ;;; Multiword lookup and score functions
926 (defun find-uobj-multiword (str obj-lookup-fun sort-fun key srl
927 only-exact-if-match limit &key extra-lookup-args)
929 (dolist (word (delimited-string-to-list str #\space))
930 (setq uobjs (nconc uobjs
931 (kmrcl:flatten (apply obj-lookup-fun word :srl srl extra-lookup-args)))))
933 (funcall sort-fun str
934 (delete-duplicates uobjs :test #'= :key key))))
935 (let ((len (length sorted)))
938 (return-from find-uobj-multiword nil))
939 ((and only-exact-if-match (multiword-match str (pfstr (first sorted))))
942 (if (and (plusp limit) (> len limit))
943 (subseq sorted 0 limit)
948 (defun find-ucon-multiword (str &key (srl *current-srl*)
949 (only-exact-if-match t)
952 (find-uobj-multiword str #'find-ucon-word #'sort-score-pfstr-str
953 #'cui srl only-exact-if-match limit
954 :extra-lookup-args (list :sab sab)))
956 (defun find-uconso-multiword (str &key (srl *current-srl*)
957 (only-exact-if-match t)
960 (find-uobj-multiword str #'find-uconso-word #'sort-score-pfstr-str
961 #'cui srl only-exact-if-match limit
962 :extra-lookup-args (list :sab sab)))
964 (defun find-uterm-multiword (str &key (srl *current-srl*)
965 (only-exact-if-match t)
967 (find-uobj-multiword str #'find-uterm-word #'sort-score-pfstr-str
968 #'lui srl only-exact-if-match limit))
970 (defun find-ustr-multiword (str &key (srl *current-srl*)
971 (only-exact-if-match t)
974 (find-uobj-multiword str #'find-ustr-word #'sort-score-ustr-str
975 #'sui srl only-exact-if-match limit
976 :extra-lookup-args (list :sab sab)))
978 (defun sort-score-pfstr-str (str uobjs)
979 "Return list of sorted and scored ucons. Score by match of str to ucon-pfstr"
980 (sort-score-umlsclass-str uobjs str #'pfstr))
982 (defun sort-score-ustr-str (str ustrs)
983 "Return list of sorted and scored ucons. Score by match of str to ucon-pfstr"
984 (sort-score-umlsclass-str ustrs str #'str))
986 (defun sort-score-umlsclass-str (objs str lookup-func)
987 "Sort a list of objects based on scoring to a string"
990 (push (list obj (score-multiword-match str (funcall lookup-func obj)))
992 (mapcar #'car (sort scored #'> :key #'cadr))))
995 ;;; LEX SQL functions
997 (defun find-lexterm-eui (eui)
998 (ensure-eui-integer eui)
999 (collect-umlisp-query (lrwd (wrd) nil eui eui :single t)
1000 (make-instance 'lexterm :eui eui :wrd wrd)))
1002 (defun find-lexterm-word (wrd)
1003 (collect-umlisp-query (lrwd (eui) nil wrd wrd)
1004 (make-instance 'lexterm :eui (ensure-integer eui)
1005 :wrd (copy-seq wrd))))
1007 ;; LEX SQL Read functions
1009 (defun find-labr-eui (eui)
1010 (ensure-eui-integer eui)
1011 (collect-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui)
1012 (make-instance 'labr :eui eui :bas bas :abr abr :bas2 bas2
1013 :eui2 (ensure-integer eui2))))
1015 (defun find-labr-bas (bas)
1016 (collect-umlisp-query (labr (eui abr eui2 bas2) nil bas bas)
1017 (make-instance 'labr :eui (ensure-integer eui) :abr abr :bas2 bas2
1018 :bas (copy-seq bas) :eui2 (ensure-integer eui2))))
1020 (defun find-lagr-eui (eui)
1021 (ensure-eui-integer eui)
1022 (collect-umlisp-query (lragr (str sca agr cit bas) nil eui eui)
1023 (make-instance 'lagr :eui eui :str str :sca sca :agr agr
1024 :cit cit :bas bas)))
1026 (defun find-lcmp-eui (eui)
1027 (ensure-eui-integer eui)
1028 (collect-umlisp-query (lrcmp (bas sca com) nil eui eui)
1029 (make-instance 'lcmp :eui eui :bas bas :sca sca :com com)))
1031 (defun find-lmod-eui (eui)
1032 (ensure-eui-integer eui)
1033 (collect-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui)
1034 (make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psn_mod :fea fea)))
1036 (defun find-lnom-eui (eui)
1037 (ensure-eui-integer eui)
1038 (collect-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui)
1039 (make-instance 'lnom :eui eui :bas bas :sca sca :bas2 bas2 :sca2 sca2
1040 :eui2 (ensure-integer eui2))))
1042 (defun find-lprn-eui (eui)
1043 (ensure-eui-integer eui)
1044 (collect-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui)
1045 (make-instance 'lprn :eui eui :bas bas :num num :gnd gnd
1046 :cas cas :pos pos :qnt qnt :fea fea)))
1048 (defun find-lprp-eui (eui)
1049 (ensure-eui-integer eui)
1050 (collect-umlisp-query (lrprp (bas str sca fea) nil eui eui)
1051 (make-instance 'lprp :eui eui :bas bas :str str :sca sca :fea fea)))
1053 (defun find-lspl-eui (eui)
1054 (ensure-eui-integer eui)
1055 (collect-umlisp-query (lrspl (spv bas) nil eui eui)
1056 (make-instance 'lspl :eui eui :spv spv :bas bas)))
1058 (defun find-ltrm-eui (eui)
1059 (ensure-eui-integer eui)
1060 (collect-umlisp-query (lrtrm (bas gen) nil eui eui)
1061 (make-instance 'ltrm :eui eui :bas bas :gen gen)))
1063 (defun find-ltyp-eui (eui)
1064 (ensure-eui-integer eui)
1065 (collect-umlisp-query (lrtyp (bas sca typ) nil eui eui)
1066 (make-instance 'ltyp :eui eui :bas bas :sca sca :typ typ)))
1068 (defun find-lwd-wrd (wrd)
1069 (make-instance 'lwd :wrd wrd
1070 :euilist (collect-umlisp-query (lrwd (eui) nil wrd wrd)
1071 (ensure-integer eui))))
1073 ;;; Semantic Network SQL access functions
1075 (defun find-sdef-ui (ui)
1076 (collect-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin)
1077 nil ui ui :single t)
1078 (make-instance 'sdef :rt rt :ui ui :styrl sty_rl :stnrtn stn_rtn
1079 :def def :ex ex :un un :rh rh :abr abr :rin rin)))
1081 (defun find-sstre1-ui (ui)
1082 (collect-umlisp-query (srstre1 (ui2 ui3) nil ui ui)
1083 (make-instance 'sstre1 :ui ui :ui2 (ensure-integer ui2)
1084 :ui3 (ensure-integer ui3))))
1086 (defun find-sstre1-ui2 (ui2)
1087 (collect-umlisp-query (srstre1 (ui ui3) nil ui2 ui2)
1088 (make-instance 'sstre1 :ui (ensure-integer ui) :ui2 ui2
1089 :ui3 (ensure-integer ui3))))
1091 (defun find-sstr-rl (rl)
1092 (collect-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl)
1093 (make-instance 'sstr :rl rl :styrl sty_rl :styrl2 sty_rl2 :ls ls)))
1095 (defun find-sstre2-sty (sty)
1096 (collect-umlisp-query (srstre2 (rl sty2) nil sty sty)
1097 (make-instance 'sstre2 :sty (copy-seq sty) :rl rl :sty2 sty2)))
1099 (defun find-sstr-styrl (styrl)
1100 (collect-umlisp-query (srstr (rl sty_rl2 ls) nil styrl styrl)
1101 (make-instance 'sstr :styrl styrl :rl rl :styrl2 sty_rl2 :ls ls)))
1104 ;;; **************************
1106 ;;; **************************
1109 (defun find-count-table (conn table srl count-variable srl-control)
1110 (with-sql-connection (conn)
1112 ((stringp srl-control)
1114 (caar (sql-query (format nil "select count(~a) from ~a where ~a <= ~d"
1115 count-variable table srl-control srl)
1119 (caar (sql-query (format nil "select count(~a) from ~a"
1120 count-variable table )
1123 (error "Unknown srl-control")
1126 (defun insert-ustats (conn name count srl)
1127 (sql-execute (format nil "insert into USTATS (name,count,srl) values ('~a',~d,~d)"
1128 name count (if srl srl 3))
1131 (defun find-ustats-all (&key (srl *current-srl*))
1133 (collect-umlisp-query (ustats (name count srl) nil srl srl
1135 (make-instance 'ustats :name name
1136 :hits (ensure-integer count)
1137 :srl (ensure-integer srl)))
1138 (collect-umlisp-query (ustats (name count srl) nil nil nil
1140 (make-instance 'ustats :name name
1141 :hits (ensure-integer count)
1142 :srl (ensure-integer srl)))))
1144 (defun find-ustats-srl (srl)
1145 (collect-umlisp-query (ustats (name count) nil srl srl :order (name asc))
1146 (make-instance 'ustats :name name :hits (ensure-integer count))))
1148 (defun find-urank-sab (sab &key (srl *current-srl*))
1149 (collect-umlisp-query (mrrank (rank sab suppress tty) nil sab sab)
1150 (make-instance 'urank :rank rank :sab sab :tty tty :suppress suppress)))
1152 (defun find-urank-all (&key (srl *current-srl*))
1154 (collect-umlisp-query (mrrank (rank sab suppress tty) nil ksrl srl)
1155 (make-instance 'urank :rank rank :sab sab :tty tty :suppress suppress))
1156 (collect-umlisp-query (mrrank (rank sab suppress tty ksrl) nil nil nil)
1157 (make-instance 'urank :rank rank :sab sab :tty tty :suppress suppress))))