r548: no message

[ctsim.git] / doc / ctsim.tex

diff --git a/doc/ctsim.tex b/doc/ctsim.tex
index 2eda7d79eb78814b6478f1a209cab3449f79d994..5b6286de81a83935dcdd8e4d1d130990e530b075 100644 (file)
--- a/doc/ctsim.tex
+++ b/doc/ctsim.tex
@@ -1,4 +1,4 @@
-\documentclass[letterpaper,12pt]{report}%
+\documentclass[letterpaper,11pt]{report}%

 \usepackage{graphicx}
 \usepackage{texhelp}
 \usepackage{fancyhea}
 \usepackage{graphicx}
 \usepackage{texhelp}
 \usepackage{fancyhea}


@@ -23,14 +23,14 @@
 \newcommand{\indexit}[1]{#1\index{#1}}%
 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
 
 \newcommand{\indexit}[1]{#1\index{#1}}%
 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
 

-\newcommand{\manvernum}[0]{0.3}
+\newcommand{\manvernum}[0]{0.6}

 \newcommand{\manver}[0]{v\manvernum}
 \newcommand{\manver}[0]{v\manvernum}

-\newcommand{\mandate}[0]{February 12, 2001}
+\newcommand{\mandate}[0]{February 16, 2001}

 \newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
 \newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
 \newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
 \newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}

-\newcommand{\ctsimvernum}[0]{3.0.0beta1}
+\newcommand{\ctsimvernum}[0]{3.0.0}

 \newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
 \newcommand{\ctsimver}[0]{CTSim \ctsimvernum}

-\newcommand{\ctsimheadtitle}{\ctsimver Manual}
+\newcommand{\ctsimheadtitle}{\ctsimver\ Manual}

 
 \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
 
 
 \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
 


@@ -39,20 +39,18 @@
 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
 \title{CTSim 3.0 User Manual}%
 \author{Kevin Rosenberg, M.D.}%
 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
 \title{CTSim 3.0 User Manual}%
 \author{Kevin Rosenberg, M.D.}%

-\date{February 9, 2001}%

 \makeindex%
 
 \makeindex%
 

-\begin{document}%
-\maketitle%
-\pagestyle{fancyplain}%
-\pagenumbering{roman}%
+\begin{document}
+\textheight=9in
+\textwidth=6.5in
+\evensidemargin=0in
+\oddsidemargin=0in

 
 

-\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
-\ctsimfooter
-\parskip=2pt
-\tableofcontents%
+\maketitle
+\pagestyle{fancyplain}
+\pagenumbering{roman}

 
 

-\parskip=10pt

 \chapter*{Copyright notice}%
 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
 \chapter*{Copyright notice}%
 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%


@@ -75,7 +73,27 @@ WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
 PERFORMANCE OF THIS SOFTWARE.
 
 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
 PERFORMANCE OF THIS SOFTWARE.
 

-\chapter{Introduction}\label{introduction}
+\chapter*{Acknowledgements}
+\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
+\setfooter{\thepage}{}{}{}{\manver}{\thepage}%
+
+\textbf{Ian Kay, Ph.D.}\\
+Dr. Kay has contributed portions to this manual. He has also assisted the
+development of \ctsim\ with his bug reports and fixes.
+
+\textbf{Gabor T. Herman, Ph.D.}\\
+Dr. Herman's publications on computed tomography provided me with my initial inspiration
+to create \ctsim\ back in 1983. Dr. Herman has graciously permitted use of his
+copyrighted head phantom for use in \ctsim.
+
+
+\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
+\ctsimfooter
+\parskip=2pt
+\tableofcontents%
+
+\parskip=10pt
+\chapter{Introduction}\label{IDH_INTRODUCTION}

 \pagenumbering{arabic}
 \setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
 \ctsimfooter
 \pagenumbering{arabic}
 \setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
 \ctsimfooter


@@ -83,33 +101,24 @@ PERFORMANCE OF THIS SOFTWARE.
 
 \centerline{\image{3cm;3cm}{logo-huge.eps}}
 Computed Tomography is a technique for estimating the interior of an
 
 \centerline{\image{3cm;3cm}{logo-huge.eps}}
 Computed Tomography is a technique for estimating the interior of an

-object from
-measurement of radiation collected around the object. This
+object from measurement of radiation collected around the object. This

 radiation can be either projected through or emitted from the
 object. \ctsim\ simulates the process of projecting X-rays
 through a phantom object. \ctsim\ can then reconstruct the
 radiation can be either projected through or emitted from the
 object. \ctsim\ simulates the process of projecting X-rays
 through a phantom object. \ctsim\ can then reconstruct the

-interior of the object from the projections collected around the
-phantom object.
+interior of the object from those projections. \ctsim\ integrates
+numerous visualization and analytic tools.

 
 This manual begins with an introduction into the concepts of
 
 This manual begins with an introduction into the concepts of

-\ctsim. The graphical, \helprefn{ctsim}{ctsim}, and
-command-line, \helprefn{ctsimtext}{ctsimtext}, shells are then
-presented. Finally, the web-based
-\helprefn{interface}{webinterface} and
-\helprefn{installation}{installation} are discussed.
+\ctsim. Next, the graphical, command-line, and web shells are
+presented. Finally, the installation of \ctsim\ is discussed.

 
 I hope that you enjoy \ctsim!
 
 \include{ctsim-concepts}
 
 I hope that you enjoy \ctsim!
 
 \include{ctsim-concepts}

-

 \include{ctsim-gui}
 \include{ctsim-gui}

-

 \include{ctsim-textui}
 \include{ctsim-textui}

-

 \include{ctsim-web}
 \include{ctsim-web}

-

 \include{ctsim-install}
 \include{ctsim-install}

-

 \include{ctsim-appendix}
 
 \newpage
 \include{ctsim-appendix}
 
 \newpage


@@ -120,6 +129,7 @@ I hope that you enjoy \ctsim!
 \setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
 \ctsimfooter
 
 \setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
 \ctsimfooter
 

+\newpage

 \addcontentsline{toc}{chapter}{Index}
 \setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
 \ctsimfooter
 \addcontentsline{toc}{chapter}{Index}
 \setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
 \ctsimfooter