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[ctsim.git] / doc / tex2rtf / ctsim.tex

diff --git a/doc/tex2rtf/ctsim.tex b/doc/tex2rtf/ctsim.tex
index 5a3254816a4235250ce5903f8958d0d16322ca69..e53446a6c7d31a965e93b35495e4ec154398ec3e 100644 (file)
--- a/doc/tex2rtf/ctsim.tex
+++ b/doc/tex2rtf/ctsim.tex
@@ -1,5 +1,11 @@
-\documentstyle[a4,makeidx,verbatim,texhelp,fancyhea,mysober,mytitle]{report}%
+\documentclass[11pt]{report}%

 %\input{psbox.tex}
 %\input{psbox.tex}

+\usepackage{texhelp}
+\usepackage{fancyheadings}
+\usepackage{mysober}
+\usepackage{mytitle}
+\usepackage{verbatim}
+\usepackage{makeidx}

 \usepackage{times}
 \usepackage{hyperref}
 
 \usepackage{times}
 \usepackage{hyperref}
 


@@ -71,6 +77,15 @@ collected around the phantom object.
 
 The \ctsim package has two executable files: the graphical \helprefn{ctsim}{ctsim} and text \helprefn{ctsimtext}{ctsimtext} programs.
 
 
 The \ctsim package has two executable files: the graphical \helprefn{ctsim}{ctsim} and text \helprefn{ctsimtext}{ctsimtext} programs.
 

+\chapter{Concepts}\index{Concepts}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+
+\section{Overview}\label{conceptoverview}\index{Concepts,Overview}%
+\section{Phantoms}\label{conceptphantom}\index{Concepts,Phantoms}%
+\section{Scanner}\label{conceptscanner}\index{Concepts,Scanner}%
+\section{Reconstruction}\label{conceptreconstruction}\index{Concepts,Reconstruction}%
+

 \chapter{Installation}\index{Installation}%
 \setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 \chapter{Installation}\index{Installation}%
 \setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%


@@ -275,6 +290,7 @@ Convert a projection file into an imagefile.
 
 \usage
 \begin{itemize}\itemsep=0pt
 
 \usage
 \begin{itemize}\itemsep=0pt

+\item --help    Print brief online help

 \end{itemize}
 
 \section{pjinfo}\label{pjinfo}\index{ctsimtext,pjinfo}%
 \end{itemize}
 
 \section{pjinfo}\label{pjinfo}\index{ctsimtext,pjinfo}%


@@ -295,30 +311,35 @@ Reconstructs the interior of an object from a projection file.
 \usage
 \begin{twocollist}
 \twocolitemruled{{\bf Parameter}}{{\bf Options}}
 \usage
 \begin{twocollist}
 \twocolitemruled{{\bf Parameter}}{{\bf Options}}

-\twocolitem{{\bf --filter}}{Selects which filter to apply to each projection. To properly reconstruct an image, this filter should be multiplied 
+\twocolitem{{\bf --filter}}
+{Selects which filter to apply to each projection. To properly reconstruct an image, this filter should be multiplied 

 by the absolute value of distance from zero frequency.
 by the absolute value of distance from zero frequency.

-  \begin{itemize}\itemsep=0pt
-    \item abs_bandlimit
-    \item abs_cosine
-    \item abs_hamming
-  \end{itemize}}
-  \twocolitem{{\bf --filter-parameter}}{Sets the alpha level for Hamming
+\begin{itemize}\itemsep=0pt
+\item abs\_bandlimit
+\item abs\_cosine
+\item abs\_hamming
+\end{itemize}
+}
+\twocolitem{{\bf --filter-parameter}}{Sets the alpha level for Hamming

   window. At setting of 0.54, this equals the Hanning window.}
   window. At setting of 0.54, this equals the Hanning window.}

-  \twocolitem{{\bf --filter-method}}{Selects the filtering method. For large numbers of detectors, {\tt rfftw} is optimal. For smaller numbers of detectors, {\tt convolution} might be a bit faster. 
+
+\twocolitem{{\bf --filter-method}}{Selects the filtering method. For large numbers of detectors, {\tt rfftw} is optimal. For smaller numbers of detectors, {\tt convolution} might be a bit faster. 

 \begin{itemize}\itemsep=0pt
 \item convolution
 \begin{itemize}\itemsep=0pt
 \item convolution

-      \item fourier
-      \item fourier_table
-      \item fftw
-      \item rfftw
-\end{itemize}}
-  \twocolitem{{\bf --filter-generation}}{Selects the filter generation. With convolution, {\tt direct} is the proper method to select. With any of the frequency methods, {\tt inverse-fourier} is the best method.
+\item fourier
+\item fourier\_table
+\item fftw
+\item rfftw
+\end{itemize}
+}
+
+\twocolitem{{\bf --filter-generation}}{Selects the filter generation. With convolution, {\tt direct} is the proper method to select. With any of the frequency methods, {\tt inverse-fourier} is the best method.

 \begin{itemize}\itemsep=0pt
 \item direct
 \begin{itemize}\itemsep=0pt
 \item direct

-      \item inverse-fourier
+\item inverse-fourier

 \end{itemize}
 }
 \end{itemize}
 }

-  \twocolitem{{\bf --interpolation}}{Interpolation technique. {\tt linear} is optimal.
+\twocolitem{{\bf --interpolation}}{Interpolation technique. {\tt linear} is optimal.

 \begin{itemize}\itemsep=0pt
 \item nearest
 \item linear
 \begin{itemize}\itemsep=0pt
 \item nearest
 \item linear


@@ -336,7 +357,7 @@ by the absolute value of distance from zero frequency.
 }
 \twocolitem{{\bf --zeropad}}{ Zeropad factor. A setting of {\tt 1} is optimal.}
 
 }
 \twocolitem{{\bf --zeropad}}{ Zeropad factor. A setting of {\tt 1} is optimal.}
 

-  \twocolitem{{\bf --preinterpolate}}{Selects preinterpolation interpolation technique and sets the preinterpolation factor. Currently, this is experimental and does not work well.}
+\twocolitem{{\bf --preinterpolate}}{Selects preinterpolation interpolation technique and sets the preinterpolation factor. Currently, this is experimental and does not work well.}

 \end{twocollist}
 
 \chapter{The Web Browser CGI Interface}\label{webinterface}\index{Web Interface}%
 \end{twocollist}
 
 \chapter{The Web Browser CGI Interface}\label{webinterface}\index{Web Interface}%


@@ -369,9 +390,9 @@ statistics as described by Herman\cite{HERMAN80}.
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 
 \addcontentsline{toc}{chapter}{Index}
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 
 \addcontentsline{toc}{chapter}{Index}

-\setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
-\printindex%
+\setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}} %
+\setfooter{\thepage}{}{}{}{}{\thepage} %
+\printindex %

 
 \end{document}%
  
 
 \end{document}%