Changes needed for 2009AB version of UMLS

[umlisp.git] / utils.lisp

diff --git a/utils.lisp b/utils.lisp
index 9fc23e4b8befa07d6a6a60c3819f1076d4009a51..20f91c4fe9d2ddea62b8c81030cf138d35eaa351 100644 (file)
--- a/utils.lisp
+++ b/utils.lisp
@@ -7,15 +7,13 @@
 ;;;; Author:   Kevin M. Rosenberg
 ;;;; Created:  Apr 2000
 ;;;;
 ;;;; Author:   Kevin M. Rosenberg
 ;;;; Created:  Apr 2000
 ;;;;

-;;;; $Id$
-;;;;

 ;;;; This file, part of UMLisp, is
 ;;;; This file, part of UMLisp, is

-;;;;    Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
+;;;;    Copyright (c) 2000-2010 by Kevin M. Rosenberg, M.D.

 ;;;;
 ;;;; UMLisp users are granted the rights to distribute and use this software
 ;;;; as governed by the terms of the GNU General Public License.
 ;;;; *************************************************************************
 ;;;;
 ;;;; UMLisp users are granted the rights to distribute and use this software
 ;;;; as governed by the terms of the GNU General Public License.
 ;;;; *************************************************************************

- 
+

 (in-package #:umlisp)
 
 (declaim (inline make-cuisui make-cuilui parse-ui parse-cui))
 (in-package #:umlisp)
 
 (declaim (inline make-cuisui make-cuilui parse-ui parse-cui))


@@ -35,62 +33,62 @@
 (defun parse-ui (s &optional (nullvalue 0))
   "Return integer value for a UMLS unique identifier."
   (declare (simple-string s)
 (defun parse-ui (s &optional (nullvalue 0))
   "Return integer value for a UMLS unique identifier."
   (declare (simple-string s)

-          (optimize (speed 3) (safety 0)))
+           (optimize (speed 3) (safety 0)))

   (if (< (length s) 2)
       nullvalue
   (if (< (length s) 2)
       nullvalue

-    (nth-value 0 (parse-integer s :start 1))))
+      (nth-value 0 (parse-integer s :start 1))))

 
 (defun parse-cui (cui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp cui)
       (let ((ch (schar cui 0)))
 
 (defun parse-cui (cui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp cui)
       (let ((ch (schar cui 0)))

-       (if (char-equal ch #\C)
-           (parse-ui cui)
-           (nth-value 0 (parse-integer cui))))
+        (if (char-equal ch #\C)
+            (parse-ui cui)
+            (nth-value 0 (parse-integer cui))))

     cui))
     cui))

-    
+

 (defun parse-lui (lui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp lui)
       (let ((ch (schar lui 0)))
 (defun parse-lui (lui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp lui)
       (let ((ch (schar lui 0)))

-       (if (char-equal ch #\L)
-           (parse-ui lui)
-           (nth-value 0 (parse-integer lui))))
+        (if (char-equal ch #\L)
+            (parse-ui lui)
+            (nth-value 0 (parse-integer lui))))

     lui))
     lui))

-    
+

 (defun parse-sui (sui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp sui)
       (let ((ch (schar sui 0)))
 (defun parse-sui (sui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp sui)
       (let ((ch (schar sui 0)))

-       (if (char-equal ch #\S)
-           (parse-ui sui)
-           (nth-value 0 (parse-integer sui))))
+        (if (char-equal ch #\S)
+            (parse-ui sui)
+            (nth-value 0 (parse-integer sui))))

     sui))
     sui))

-    
+

 (defun parse-tui (tui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp tui)
       (let ((ch (schar tui 0)))
 (defun parse-tui (tui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp tui)
       (let ((ch (schar tui 0)))

-       (if (char-equal ch #\T)
-           (parse-ui tui)
-           (nth-value 0 (parse-integer tui))))
+        (if (char-equal ch #\T)
+            (parse-ui tui)
+            (nth-value 0 (parse-integer tui))))

     tui))
 
 (defun parse-aui (aui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp aui)
       (let ((ch (schar aui 0)))
     tui))
 
 (defun parse-aui (aui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp aui)
       (let ((ch (schar aui 0)))

-       (if (char-equal ch #\A)
-           (parse-ui aui)
-           (nth-value 0 (parse-integer aui))))
+        (if (char-equal ch #\A)
+            (parse-ui aui)
+            (nth-value 0 (parse-integer aui))))

     aui))
 
 (defun parse-rui (rui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp rui)
       (let ((ch (schar rui 0)))
     aui))
 
 (defun parse-rui (rui)
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp rui)
       (let ((ch (schar rui 0)))

-       (if (char-equal ch #\R)
-           (parse-ui rui)
+        (if (char-equal ch #\R)
+            (parse-ui rui)

           (nth-value 0 (parse-integer rui))))
     rui))
 
           (nth-value 0 (parse-integer rui))))
     rui))
 


@@ -98,44 +96,45 @@
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp eui)
       (let ((ch (schar eui 0)))
   (declare (optimize (speed 3) (safety 0)))
   (if (stringp eui)
       (let ((ch (schar eui 0)))

-       (if (char-equal ch #\E)
-           (parse-ui eui)
-           (nth-value 0 (parse-integer eui))))
+        (if (char-equal ch #\E)
+            (parse-ui eui)
+            (nth-value 0 (parse-integer eui))))

     eui))
     eui))

-    
-(defconstant +cuisui-scale+ 10000000)
-(declaim (type (integer 0 10000000) +cuisui-scale+))

 
 

-#+64bit
+(defconstant +cuisui-scale+ 100000000)
+(declaim (type (integer 0 100000000) +cuisui-scale+))
+
+#+(or 64bit x86-64)

 (defun make-cuisui (cui sui)
 (defun make-cuisui (cui sui)

-  (declare (fixnum cui sui)
-          (optimize (speed 3) (safety 0) (space 0)))
-  (the fixnum 
+  (declare (type (integer 0 100000000) cui sui)
+           (optimize (speed 3) (safety 0) (space 0)))
+  (the fixnum

     (+ (the fixnum (* +cuisui-scale+ cui)) sui)))
 
     (+ (the fixnum (* +cuisui-scale+ cui)) sui)))
 

-#-64bit
+#-(or 64bit x86-64)

 (defun make-cuisui (cui sui)
 (defun make-cuisui (cui sui)

-  (declare (fixnum cui sui)
-          (optimize (speed 3) (safety 0) (space 0)))
-  (+ (* +cuisui-scale+ cui) sui))
+  (when (and cui sui)
+    (locally (declare (fixnum cui sui)
+                      (optimize (speed 3) (safety 0) (space 0)))
+             (+ (* +cuisui-scale+ cui) sui))))

 
 

-#+64bit
+#+(or 64bit x86-64)

 (defun make-cuilui (cui lui)
 (defun make-cuilui (cui lui)

-  (declare (fixnum cui lui)
-          (optimize (speed 3) (safety 0) (space 0)))
-  (the fixnum 
+  (declare (type (integer 0 100000000) cui lui)
+           (optimize (speed 3) (safety 0) (space 0)))
+  (the fixnum

     (+ (the fixnum (* +cuisui-scale+ cui)) lui)))
 
     (+ (the fixnum (* +cuisui-scale+ cui)) lui)))
 

-#-64bit
+#-(or 64bit x86-64)

 (defun make-cuilui (cui lui)
   (declare (fixnum cui lui)
 (defun make-cuilui (cui lui)
   (declare (fixnum cui lui)

-          (optimize (speed 3) (safety 0) (space 0)))
+           (optimize (speed 3) (safety 0) (space 0)))

   (+ (* +cuisui-scale+ cui) lui))
 
 (defun decompose-cuisui (cuisui)
   "Returns the CUI and SUI of a cuisui number"
   (+ (* +cuisui-scale+ cui) lui))
 
 (defun decompose-cuisui (cuisui)
   "Returns the CUI and SUI of a cuisui number"

-  #-64bit (declare (integer cuisui))
-  #+64bit (declare (fixnum cuisui))
+  #-(or 64bit x86-64) (declare (integer cuisui))
+  #+(or 64bit x86-64) (declare (fixnum cuisui))

   (floor cuisui +cuisui-scale+))
 
 ;;; Lookup functions for uterms,ustr in ucons
   (floor cuisui +cuisui-scale+))
 
 ;;; Lookup functions for uterms,ustr in ucons


@@ -150,4 +149,4 @@
   (dolist (uterm (s#term ucon))
     (dolist (ustr (s#str uterm))
       (when (string-equal sui (sui ustr))
   (dolist (uterm (s#term ucon))
     (dolist (ustr (s#str uterm))
       (when (string-equal sui (sui ustr))

-       (return-from find-ustr-in-ucon ustr)))))
+        (return-from find-ustr-in-ucon ustr)))))