;;;; Programmer: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: classes.lisp,v 1.14 2002/11/23 22:15:13 kevin Exp $
+;;;; $Id: classes.lisp,v 1.22 2002/12/09 14:11:09 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
(defclass umlsclass (hyperobject)
()
(:metaclass hyperobject-class)
- (:documentation "Parent class of all UMLS objects. It is based on the HYPEROBJECT-CLASS metaclass that provides object printing functions."))
+ (:description "Parent class of all UMLS objects. It is based on the HYPEROBJECT-CLASS metaclass that provides object printing functions."))
(defclass usrl (umlsclass)
(srl :type fixnum :initarg :srl :reader srl))
(:metaclass hyperobject-class)
(:default-initargs :sab nil :srl nil)
- (:title "Source Restriction Level")
+ (:user-name "Source Restriction Level")
(:print-slots sab srl)
- (:documentation "Custom Table: Source Restriction Level"))
+ (:description "Custom Table: Source Restriction Level"))
(defclass urank (umlsclass)
(supres :type string :initarg :supres :reader supres))
(:metaclass hyperobject-class)
(:default-initargs :rank nil :sab nil :tty nil :supres nil)
- (:title "Rank")
+ (:user-name "Rank")
(:print-slots rank sab tty supres))
(defclass udef (umlsclass)
((def :type cdata :initarg :def :reader def)
- (sab :type string :initarg :sab :reader sab :reference find-usab-rsab))
+ (sab :type string :initarg :sab :reader sab :hyperlink find-usab-rsab))
(:metaclass hyperobject-class)
(:default-initargs :def nil :sab nil)
- (:title "Definition")
+ (:user-name "Definition")
(:print-slots sab def))
(defclass usat (umlsclass)
- ((sab :type string :initarg :sab :reader sab :reference find-usab-rsab)
+ ((sab :type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(code :type string :initarg :code :reader code)
(atn :type string :initarg :atn :reader atn)
(atv :type cdata :initarg :atv :reader atv))
(:metaclass hyperobject-class)
(:default-initargs :sab nil :code nil :atn nil :atv nil)
- (:title "Simple Attribute")
+ (:user-name "Simple Attribute")
(:print-slots sab code atn atv))
(defclass usab (umlsclass)
((vcui :type fixnum :initarg :vcui :reader vcui :print-formatter fmt-cui)
(rcui :type fixnum :initarg :rcui :reader rcui :print-formatter fmt-cui)
(vsab :type string :initarg :vsab :reader vsab)
- (rsab :type string :initarg :rsab :reader rsab :reference find-ucan-sab)
+ (rsab :type string :initarg :rsab :reader rsab :hyperlink find-ucan-sab)
(son :type string :initarg :son :reader son)
(sf :type string :initarg :sf :reader sf)
(sver :type string :initarg :sver :reader sver)
(slc :type cdata :initarg :slc :reader slc)
(scc :type cdata :initarg :scc :reader scc)
(srl :type fixnum :initarg :srl :reader srl)
- (tfr :type fixnum :initarg :tfr :reader tfr :print-formatter ho:comma-integer)
- (cfr :type fixnum :initarg :cfr :reader cfr :print-formatter ho:comma-integer)
+ (tfr :type fixnum :initarg :tfr :reader tfr :print-formatter fmt-comma-integer)
+ (cfr :type fixnum :initarg :cfr :reader cfr :print-formatter fmt-comma-integer)
(cxty :type string :initarg :cxty :reader cxty)
(ttyl :type string :initarg :ttyl :reader ttyl)
(atnl :type string :initarg :atnl :reader atnl)
:slc nil :scc nil :srl nil :tfr nil :cfr nil :cxty nil
:ttyl nil :atnl nil :lat nil :cenc nil :curver nil
:sabin nil)
- (:title "Source Abbreviation")
- (:print-slots vcui rcui vsab rsab san sf sver mstart mend imeta
- rmeta slc scc srl tfr csr cxty ttyl atnl lat cenc
+ (:user-name "Source Abbreviation")
+ (:print-slots vcui rcui vsab rsab son sf sver mstart mend imeta
+ rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc
curver sabin))
(defclass uso (umlsclass)
- ((sab :type string :initarg :sab :reader sab :reference find-usab-rsab)
+ ((sab :type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(code :type string :initarg :code :reader code)
- (tty :type string :initarg :tty :reader tty :reference find-btty-tty)
+ (tty :type string :initarg :tty :reader tty :hyperlink find-btty-tty)
(srl :type fixnum :initarg :srl :reader srl))
(:metaclass hyperobject-class)
(:default-initargs :sab nil :code nil :tty nil :srl nil)
- (:title "Source")
+ (:user-name "Source")
(:print-slots sab code tty srl))
(defclass ucxt (umlsclass)
- ((sab :type string :initarg :sab :reader sab :reference find-usab-rsab)
+ ((sab :type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(code :type string :initarg :code :reader code)
(rnk :type fixnum :initarg :rnk :reader rnk)
(cxn :type fixnum :initarg :cxn :reader cxn)
(cxl :type string :initarg :cxl :reader cxl)
(cxs :type cdata :initarg :cxs :reader cxs)
- (cui2 :type fixnum :initarg :cui2 :reader cui2 :reference find-ucon-cui
+ (cui2 :type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-cui
:print-formatter fmt-cui)
(hcd :type string :initarg :hcd :reader hcd)
(rela :type string :initarg :rela :reader rela)
(:metaclass hyperobject-class)
(:default-initargs :sab nil :code nil :rnk nil :cxn nil :cxl nil :cxs nil
:cui2 nil :hcd nil :rela nil :xc nil)
- (:title "Context")
- (:print-slots sab code rnk cnx cxl hcd rela xc cui2 cxs))
+ (:user-name "Context")
+ (:print-slots sab code rnk cxn cxl hcd rela xc cui2 cxs))
(defclass ustr (umlsclass)
((sui :type fixnum :initarg :sui :reader sui :print-formatter fmt-sui
- :reference find-ustr-sui)
- (cui :type fixnum :initarg :cui :reader cui :print-formatter fmt-cui)
+ :hyperlink find-ustr-sui)
+ (cui :type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
+ :hyperlink find-ucon-cui)
(lui :type fixnum :initarg :lui :reader lui :print-formatter fmt-lui
- :reference find-uterm-lui)
+ :hyperlink find-uterm-lui)
(cuisui :type integer :initarg :cuisui :reader cuisui )
(str :type cdata :initarg :str :reader str)
(lrl :type fixnum :initarg :lrl :reader lrl)
(stt :type string :initarg :stt :reader stt)
- (s#sat :reader s#sat :subobject t)
- (s#so :reader s#so :subobject t)
- (s#cxt :reader s#cxt :subobject t))
+ (s#sat :reader s#sat :subobject (find-usat-ui cui lui sui))
+ (s#so :reader s#so :subobject (find-uso-cuisui cui sui))
+ (s#cxt :reader s#cxt :subobject (find-ucxt-cuisui cui sui)))
(:metaclass hyperobject-class)
(:default-initargs
:sui nil :cui nil :lui nil :cuisui nil :str nil :lrl nil :stt nil)
- (:title "String")
+ (:user-name "String")
(:print-slots sui stt lrl str))
(defclass ulo (umlsclass)
(soui :type string :initarg :soui :reader soui))
(:metaclass hyperobject-class)
(:default-initargs :isn nil :fr nil :un nil :sui nil :sna nil :soui nil)
- (:title "Locator")
- (:print-slots isn fr un sna soui sui suistr))
+ (:user-name "Locator")
+ (:print-slots isn fr un sna soui sui))
(defclass uterm (umlsclass)
- ((lui :type fixnum :initarg :lui :reader lui :reference find-uterm-lui)
- (cui :type fixnum :initarg :cui :reader cui)
+ ((lui :type fixnum :initarg :lui :reader lui :print-formatter fmt-lui
+ :hyperlink find-uterm-lui)
+ (cui :type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
+ :hyperlink find-ucon-cui)
(lat :type string :initarg :lat :reader lat)
(ts :type string :initarg :ts :reader ts)
(lrl :type fixnum :initarg :lrl :reader lrl)
- (s#str :reader s#str :subobject t)
- (s#sat :reader s#sat :subobject t))
+ (s#str :reader s#str :subobject (find-ustr-cuilui cui lui))
+ (s#sat :reader s#sat :subobject (find-usat-ui cui lui)))
(:metaclass hyperobject-class)
(:default-initargs :lui nil :cui nil :lat nil :ts nil :lrl nil)
- (:title "Term")
+ (:user-name "Term")
(:print-slots lui lat ts lrl))
(defclass usty (umlsclass)
((tui :type fixnum :initarg :tui :reader tui :print-formatter fmt-tui
- :reference (find-ucon-tui ("subobjects" "no")))
+ :hyperlink (find-ucon-tui ("subobjects" "no")))
(sty :type string :initarg :sty :reader sty))
(:metaclass hyperobject-class)
(:default-initargs :tui nil :sty nil)
- (:title "Semantic Type")
+ (:user-name "Semantic Type")
(:print-slots tui sty))
(defclass urel (umlsclass)
- ((rel :type string :initarg :rel :reader rel :reference find-brel-rel)
+ ((rel :type string :initarg :rel :reader rel :hyperlink find-brel-rel)
(cui1 :type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
- (cui2 :type fixnum :initarg :cui2 :reader cui2 :reference find-ucon-sui
+ (cui2 :type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-sui
:print-formatter fmt-cui)
(pfstr2 :type cdata :initarg :pfstr2 :reader pfstr2)
(rela :type string :initarg :rela :reader rela)
- (sab :type string :initarg :sab :reader sab :reference find-usab-rsab)
+ (sab :type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(sl :type string :initarg :sl :reader sl)
(mg :type string :initarg :mg :reader mg))
(:metaclass hyperobject-class)
(:default-initargs
:rel nil :cui1 nil :cui2 nil :pfstr2 nil :rela nil :sab nil :sl nil :mg nil)
- (:title "Relationship")
+ (:user-name "Relationship")
(:print-slots rel rela sab sl mg cui2 pfstr2))
(defclass ucoc (umlsclass)
((cui1 :type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
(cui2 :type fixnum :initarg :cui2 :reader cui2 :print-formatter fmt-cui
- :reference find-ucon-cui)
+ :hyperlink find-ucon-cui)
(pfstr2 :type cdata :initarg :pfstr2 :reader pfstr2)
(soc :type string :initarg :soc :reader soc)
(cot :type string :initarg :cot :reader cot)
(:metaclass hyperobject-class)
(:default-initargs
:cui1 nil :cui2 nil :pfstr2 nil :soc nil :cot nil :cof nil :coa nil)
- (:title "Co-occuring Concept")
+ (:user-name "Co-occuring Concept")
(:print-slots soc cot cof coa cui2 pfstr2))
(atx :type cdata :initarg :atx :reader atx))
(:metaclass hyperobject-class)
(:default-initargs :sab nil :rel nil :atx nil)
- (:title "Associated Expression")
+ (:user-name "Associated Expression")
(:print-slots sab rel atx))
(defclass ucon (umlsclass)
((cui :type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
- :reference find-ucon-cui)
+ :hyperlink find-ucon-cui)
(pfstr :type cdata :initarg :pfstr :reader pfstr)
(lrl :type fixnum :initarg :lrl :reader lrl)
- (s#term :reader s#term :subobject t)
- (s#def :reader s#def :subobject t)
- (s#lo :reader s#lo :subobject t)
- (s#rel :reader s#rel :subobject t)
- (s#coc :reader s#coc :subobject t)
- (s#sat :reader s#sat :subobject t)
- (s#atx :reader s#atx :subobject t)
- (s#sty :reader s#sty :subobject t))
+ (s#term :reader s#term :subobject (find-uterm-cui cui))
+ (s#def :reader s#def :subobject (find-udef-cui cui))
+ (s#lo :reader s#lo :subobject (find-ulo-cui cui))
+ (s#rel :reader s#rel :subobject (find-urel-cui cui))
+ (s#coc :reader s#coc :subobject (find-ucoc-cui cui))
+ (s#sat :reader s#sat :subobject (find-usat-ui cui))
+ (s#atx :reader s#atx :subobject (find-uatx-cui cui))
+ (s#sty :reader s#sty :subobject (find-usty-cui cui)))
(:metaclass hyperobject-class)
(:default-initargs :cui nil :pfstr nil :lrl nil)
- (:title "Concept")
+ (:user-name "Concept")
(:print-slots cui lrl pfstr))
(defclass uxw (umlsclass)
(sui :type fixnum :initform nil :initarg :sui :reader sui :print-formatter fmt-sui))
(:metaclass hyperobject-class)
(:default-initargs :wd nil :cui nil :lui nil :sui nil)
- (:title "XW Index")
+ (:user-name "XW Index")
(:print-slots wd cui lui sui))
(defclass uxnw (umlsclass)
(cuilist :type list :initarg :cuilist :reader uxnw-cuilist))
(:metaclass hyperobject-class)
(:default-initargs :lat nil :nwd nil :cuilist nil)
- (:title "XNW Index")
+ (:user-name "XNW Index")
(:print-slots lat nwd cuilist))
(defclass uxns (umlsclass)
(cuilist :type list :initarg :cuilist :reader cuilist))
(:metaclass hyperobject-class)
(:default-initargs :lat nil :nstr nil :cuilist nil)
- (:title "XNS Index")
+ (:user-name "XNS Index")
(:print-slots lat nstr cuilist))
(defclass lexterm (umlsclass)
((eui :type fixnum :initarg :eui :reader eui :print-formatter fmt-eui
- :reference find-lexterm-eui)
+ :hyperlink find-lexterm-eui)
(wrd :type string :initarg :wrd :reader wrd)
- (s#abr :reader s#abr :subobject t)
- (s#agr :reader s#agr :subobject t)
- (s#cmp :reader s#cmp :subobject t)
- (s#mod :reader s#mod :subobject t)
- (s#nom :reader s#nom :subobject t)
- (s#prn :reader s#prn :subobject t)
- (s#prp :reader s#prp :subobject t)
- (s#spl :reader s#spl :subobject t)
- (s#trm :reader s#trm :subobject t)
- (s#typ :reader s#typ :subobject t))
+ (s#abr :reader s#abr :subobject (find-labr-eui eui))
+ (s#agr :reader s#agr :subobject (find-lagr-eui eui))
+ (s#cmp :reader s#cmp :subobject (find-lcmp-eui eui))
+ (s#mod :reader s#mod :subobject (find-lmod-eui eui))
+ (s#nom :reader s#nom :subobject (find-lnom-eui eui))
+ (s#prn :reader s#prn :subobject (find-lprn-eui eui))
+ (s#prp :reader s#prp :subobject (find-lprp-eui eui))
+ (s#spl :reader s#spl :subobject (find-lspl-eui eui))
+ (s#trm :reader s#trm :subobject (find-ltrm-eui eui))
+ (s#typ :reader s#typ :subobject (find-ltyp-eui eui)))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :wrd nil)
- (:title "Lexical Term")
+ (:user-name "Lexical Term")
(:print-slots eui wrd))
(bas2 :type string :initarg :bas2 :reader bas2))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :abr nil :eui2 nil :bas2 nil)
- (:title "Abbreviations and Acronyms")
- (:print-slots eui bas absr eui2 bas3))
+ (:user-name "Abbreviations and Acronyms")
+ (:print-slots eui bas abr eui2 bas2))
(defclass lagr (umlsclass)
((eui :type integer :initarg :eui :reader eui :print-formatter fmt-eui)
(bas :type string :initarg :bas :reader bas))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :str nil :sca nil :agr nil :cit nil :bas nil)
- (:title "Agreement and Inflection")
+ (:user-name "Agreement and Inflection")
(:print-slots eui str sca agr cit bas))
(defclass lcmp (umlsclass)
(com :type string :initarg :com :reader com))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :sca nil :com nil)
- (:title "Complementation")
- (:print-slots eui bas sca cam))
+ (:user-name "Complementation")
+ (:print-slots eui bas sca com))
(defclass lmod (umlsclass)
((eui :type integer :initarg :eui :reader eui :print-formatter fmt-eui)
(fea :type string :initarg :fea :reader fea))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :sca nil :psnmod nil :fea nil)
- (:title "Modifiers")
- (:print-slots eui bas scan psnmod fea))
+ (:user-name "Modifiers")
+ (:print-slots eui bas sca psnmod fea))
(defclass lnom (umlsclass)
((eui :type integer :initarg :eui :reader eui :print-formatter fmt-eui)
(sca2 :type string :initarg :sca2 :reader sca2))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :sca nil :eui2 nil :bas2 nil :sca2 nil)
- (:title "Nominalizations")
- (:print-slots eui bas eui2 bas2 sca2))
+ (:user-name "Nominalizations")
+ (:print-slots eui bas sca eui2 bas2 sca2))
(defclass lprn (umlsclass)
((eui :type integer :initarg :eui :reader eui :print-formatter fmt-eui)
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :num nil :gnd nil :cas nil
:pos nil :qnt nil :fea nil)
- (:title "Pronouns")
+ (:user-name "Pronouns")
(:print-slots eui bas num gnd cas pos qnt fea))
(defclass lprp (umlsclass)
(fea :type string :initarg :fea :reader fea))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :str nil :sca nil :fea nil)
- (:title "Properties")
+ (:user-name "Properties")
(:print-slots eui bas str sca fea))
(bas :type string :initarg :bas :reader bas))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :spv nil :bas nil)
- (:title "Spelling Variants")
+ (:user-name "Spelling Variants")
(:print-slots eui spv bas))
(gen :type string :initarg :gen :reader gen))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :gen nil)
- (:title "Trade Marks")
+ (:user-name "Trade Marks")
(:print-slots eui bas gen))
(defclass ltyp (umlsclass)
(typ :type string :initarg :typ :reader typ))
(:metaclass hyperobject-class)
(:default-initargs :eui nil :bas nil :sca nil :typ nil)
- (:title "Inflection Type")
+ (:user-name "Inflection Type")
(:print-slots eui bas sca typ))
(defclass lwd (umlsclass)
(euilist :type list :initarg :euilist :reader euilist))
(:metaclass hyperobject-class)
(:default-initargs :wrd nil :euilist nil)
- (:title "Lexical Word Index")
+ (:user-name "Lexical Word Index")
(:print-slots wrd euilist))
;;; Semantic NET objects
(:default-initargs
:rt nil :ui nil :styrl nil :stnrtn nil :def nil :ex nil :un nil :rh nil
:abr nil :rin nil)
- (:title "Basic information about Semantic Types and Relations")
+ (:user-name "Basic information about Semantic Types and Relations")
(:print-slots rt ui styrl stnrtn def ex un rh abr rin))
(defclass sstr (umlsclass)
(ls :type string :initarg :ls :reader ls))
(:metaclass hyperobject-class)
(:default-initargs :styrl nil :rl nil :styrl2 nil :ls nil)
- (:title "Structure of the Network")
- (:print-slots styrl rl styl2 ls))
+ (:user-name "Structure of the Network")
+ (:print-slots styrl rl styrl2 ls))
(defclass sstre1 (umlsclass)
((ui :type integer :initarg :ui :reader ui :print-formatter fmt-tui)
(ui3 :type integer :initarg :ui3 :reader ui3 :print-formatter fmt-tui))
(:metaclass hyperobject-class)
(:default-initargs :ui nil :ui2 nil :ui3 nil)
- (:title "Fully Inherited Set of Releatons (TUI's)")
+ (:user-name "Fully Inherited Set of Releatons (TUI's)")
(:print-slots ui ui2 ui3))
(defclass sstre2 (umlsclass)
(sty2 :type string :initarg :ui3 :reader sty2))
(:metaclass hyperobject-class)
(:default-initargs :sty nil :rl nil :sty2 nil)
- (:title "Fully Inherited Set of Releatons (strings)")
+ (:user-name "Fully Inherited Set of Releatons (strings)")
(:print-slots sty rl sty2))
;;; Formatting routines
(eval-when (:compile-toplevel :load-toplevel :execute)
(defun english-term-p (obj)
"Returns two values: T/NIL if term is english and T/NIL if obj is a TERM"
- (if (eq (hyperobject::portable-class-name (hyperobject::portable-class-of obj)) 'uterm)
+ (if (eq (hyperobject::class-name (hyperobject::class-of obj)) 'uterm)
(values (string-equal (lat obj) "ENG") t)
(values nil nil))))
-(defgeneric print-umlsclass (obj &key os format label file-wrapper english-only subobjects refvars)
- )
-
-(defmethod print-umlsclass ((obj umlsclass) &key (os *standard-output*) (format :text)
+(defun print-umlsclass (obj &key (os *standard-output*) (format :text)
(label nil) (file-wrapper t) (english-only nil) (subobjects nil)
(refvars nil))
- (print-hyperobject obj :os os :format format :label label :subobjects subobjects
- :file-wrapper file-wrapper
- :english-only-function (if english-only #'english-term-p nil)
- :refvars refvars))
+ (view obj :os os :format format :label label :subobjects subobjects
+ :file-wrapper file-wrapper
+ :english-only-function (if english-only #'english-term-p nil)
+ :refvars refvars))
(defmacro define-lookup-display (newfuncname lookup-func)
projects / umlisp.git / blobdiff