-;;;; -*- Mode: Lisp; Syntax: ANSI-Common-Lisp; Base: 10; Package: umlisp -*-
+;;; -*- Mode: Lisp; Syntax: ANSI-Common-Lisp; Base: 10; Package: umlisp -*-
;;;; *************************************************************************
;;;; FILE IDENTIFICATION
;;;;
;;;; Programmer: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: composite.lisp,v 1.3 2002/10/09 23:03:41 kevin Exp $
+;;;; $Id: composite.lisp,v 1.11 2002/11/23 22:15:13 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
;;; Composite Objects
-(defclass ucon_freq (umlsclass)
- ((ucon :type ucon :initarg :ucon :reader ucon)
- (freq :type fixnum :initarg :freq :accessor freq))
- (:metaclass kmrcl:ml-class)
- (:default-initargs :cui nil :pfstr nil :freq nil)
+(defclass ucon_freq (ucon)
+ ((freq :type integer :initarg :freq :accessor freq :print-formatter ho:comma-integer))
+ (:metaclass hyperobject-class)
+ (:default-initargs :freq 0)
(:title "Concept and Count")
- (:fields (cui :string fmt-cui) (freq :fixnum) (pfstr :cdata))
- (:ref-fields (cui find-ucon-cui))
+ (:print-slots cui freq pfstr)
(:documentation "Composite object of ucon/freq"))
-(defun ucon_freq-cui (c)
- (cui (ucon c)))
-
-(defun ucon_freq-pfstr (c)
- (pfstr (ucon c)))
-
-(defclass ustr_freq (umlsclass)
- ((ustr :type ustr :initarg :ustr :reader ustr)
- (freq :type fixnum :initarg :freq :accessor freq))
- (:metaclass kmrcl:ml-class)
- (:default-initargs :cui nil :pfstr nil :freq nil)
+(defclass ustr_freq (ustr)
+ ((freq :type fixnum :initarg :freq :accessor freq :print-formatter ho:comma-integer))
+ (:metaclass hyperobject-class)
+ (:default-initargs :freq 0)
(:title "String and Count")
- (:fields (sui :string fmt-sui) (freq :fixnum) (stt :string) (lrl :fixnum) (str :cdata))
- (:ref-fields (sui find-ustr-sui))
+ (:print-slots sui freq stt lrl str)
(:documentation "Composite object of ustr/freq"))
-(defun ustr_freq-sui (s)
- (sui (ustr s)))
-
-(defun ustr_freq-str (s)
- (str (ustr s)))
-
-(defun ustr_freq-lrl (s)
- (lrl (ustr s)))
-
-(defun ustr_freq-stt (s)
- (stt (ustr s)))
-
-(defclass usty_freq (umlsclass)
- ((usty :type usty :initarg :usty :reader usty)
- (freq :type fixnum :initarg :freq :accessor freq))
- (:metaclass kmrcl:ml-class)
- (:default-initargs :usty nil :freq nil)
+(defclass usty_freq (usty)
+ ((freq :type fixnum :initarg :freq :accessor freq))
+ (:metaclass hyperobject-class)
+ (:default-initargs :freq 0)
(:title "Semantic Type and Count")
- (:ref-fields (tui find-ucon-tui "subobjects=no"))
- (:fields (tui :string fmt-tui) (freq :fixnum) (sty :string))
+ (:print-slots tui freq sty)
(:documentation "Composite object of usty/freq"))
-(defun usty_freq-tui (s)
- (tui (usty s)))
-
-(defun usty_freq-sty (s)
- (sty (usty s)))
-
-(defclass usrl_freq (umlsclass)
- ((usrl :type usrl :initarg :usrl :reader usrl)
- (freq :type fixnum :initarg :freq :accessor freq))
- (:metaclass kmrcl:ml-class)
- (:default-initargs :usrl nil :freq nil)
+(defun find-usty_freq-all ()
+ (let ((usty_freqs '()))
+ (dolist (tuple (mutex-sql-query "select distinct TUI from MRSTY"))
+ (let* ((tui (car tuple))
+ (freq (ensure-integer
+ (caar (mutex-sql-query
+ (format nil "select count(*) from MRSTY where TUI=~a" tui))))))
+ (push (make-instance 'usty_freq :usty (find-usty-tui tui) :freq freq) usty_freqs)))
+ (sort usty_freqs #'> :key #'freq)))
+
+
+(defclass usrl_freq (usrl)
+ ((freq :type fixnum :initarg :freq :accessor freq :print-formatter ho:comma-integer))
+ (:metaclass hyperobject-class)
+ (:default-initargs :freq 0)
(:title "Source and Count")
- (:ref-fields (sab find-ustr-sab))
- (:fields (sab :string) (freq :commainteger) (srl :fixnum))
+ (:print-slots sab freq srl)
(:documentation "Composite object of usrl/freq"))
-(defun usrl_freq-sab (s)
- (sab (usrl s)))
-
-(defun usrl_freq-srl (s)
- (srl (usrl s)))
+;; Frequency finding functions
+(defun find-usrl_freq-all ()
+ (let ((freqs '()))
+ (dolist (usrl (find-usrl-all))
+ (let ((freq (ensure-integer
+ (caar (mutex-sql-query
+ (format nil "select count(*) from MRSO where SAB='~a'"
+ (sab usrl)))))))
+ (push (make-instance 'usrl_freq :usrl usrl :freq freq) freqs)))
+ (sort freqs #'> :key #'usrl_freq-freq)))
-;; Frequency finding functions
(defun find-ucon2_freq-coc-tui (ucon tui)
"Return sorted list of tuples with ucon and freq that have co-occuring concepts of semantic type tui"
(let ((ucon_freqs '()))
(kmrcl:aif (cui2 ucoc)
(let ((ucon2 (find-ucon-cui kmrcl::it)))
(when (ucon-is-tui? ucon2 tui)
- (push (make-instance 'ucon_freq :ucon ucon2 :freq (cof ucoc))
+ (push (make-instance 'ucon_freq :cui (cui ucon2) :lrl (lrl ucon2)
+ :pfstr (pfstr ucon2) :freq (cof ucoc))
ucon_freqs)))))
(setq ucon_freqs (delete-duplicates ucon_freqs :key #'cui))
(sort ucon_freqs #'> :key #'freq)))
(kmrcl:aif (aref ucon_freqs (cui ucon2))
(setf (freq kmrcl::it) (1+ (freq kmrcl::it)))
(setf (aref ucon_freqs (cui ucon2))
- (make-instance 'ucon_freq :ucon ucon2 :freq 1)))))
+ (make-instance 'ucon_freq :cui (cui ucon2) :lrl (lrl ucon2)
+ :pfstr (pfstr ucon2) :freq 1)))))
(let ((ucon_freq-list '()))
(dotimes (i (find-cui-max))
(declare (fixnum i))
(defun find-ucon2_freq-coc-tui-all (tui)
(find-ucon2_freq-tui-all tui #'find-ucon2-coc-tui))
+#+(or cmu scl)
+(dolist (c '(ucon_freq ustr_freq usty_freq usrl_freq))
+ (let ((cl #+cmu (pcl:find-class c)
+ #+scl (find-class c)))
+ #+cmu (pcl:finalize-inheritance cl)
+ #+scl (clos:finalize-inheritance cl)))
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