;;;; Author: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: create-sql.lisp,v 1.2 2003/05/07 22:53:36 kevin Exp $
+;;;; $Id: create-sql.lisp,v 1.7 2003/07/21 09:46:22 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2003 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
(in-package #:umlisp)
-(eval-when (:compile-toplevel)
- (declaim (optimize (speed 3) (safety 1) (compilation-speed 0) (debug 3))))
-
(defun create-table-cmd (file)
"Return sql command to create a table"
(let ((col-func
conn)))
(defun sql-create-special-tables (conn)
- (make-usrl conn))
+ (make-usrl conn)
+ (make-ustats))
(defun create-umls-db-by-insert ()
"SQL Databases: initializes entire database via SQL insert commands"
- (ensure-init-umls)
- (init-hash-table)
+ (ensure-ucols+ufiles)
+ (ensure-preparse)
(with-sql-connection (conn)
(sql-drop-tables conn)
(sql-create-tables conn)
(copy-cmd #'mysql-copy-cmd))
"SQL Databases: initializes entire database via SQL copy commands.
This is much faster that using create-umls-db-insert."
- (ensure-init-umls)
- (init-hash-table)
+ (ensure-ucols+ufiles)
+ (ensure-preparse)
(translate-all-files extension)
(with-sql-connection (conn)
(sql-drop-tables conn)
(defun translate-all-files (&optional (extension ".trans"))
"Copy translated files and return postgresql copy commands to import"
(make-noneng-index-file extension)
- (dolist (f *umls-files*) (translate-umls-file f extension)))
+ (dolist (f (remove "MRXW.NONENG" *umls-files* :test #'string= :key #'fil))
+ (translate-umls-file f extension)))
(defun translate-umls-file (file extension)
"Translate a umls file into a format suitable for sql copy cmd"
(nreverse avoidable) (nreverse unavoidable))))
(defun display-waste ()
- (ensure-init-umls)
+ (ensure-ucols+ufiles)
(multiple-value-bind (tw ta tu al ul) (umls-fixed-size-waste)
(format t "Total waste: ~d~%" tw)
(format t "Total avoidable: ~d~%" ta)
(defun max-umls-field ()
"Return length of longest field"
(declare (optimize (speed 3) (space 0)))
- (ensure-init-umls)
+ (ensure-ucols+ufiles)
(let ((max 0))
(declare (fixnum max))
(dolist (ucol *umls-cols*)
(defun max-umls-row ()
"Return length of longest row"
(declare (optimize (speed 3) (space 0)))
- (ensure-init-umls)
+ (ensure-ucols+ufiles)
(let ((rowsizes '()))
(dolist (file *umls-files*)
(let ((row 0))