;;;; *************************************************************************
;;;; FILE IDENTIFICATION
;;;;
-;;;; Name: data-structures.lisp
-;;;; Purpose: Basic data objects for UMLisp
-;;;; Author: Kevin M. Rosenberg
-;;;; Date Started: Apr 2000
+;;;; Name: data-structures.lisp
+;;;; Purpose: Basic data objects for UMLisp
+;;;; Author: Kevin M. Rosenberg
+;;;; Created: Apr 2000
;;;;
-;;;; $Id: data-structures.lisp,v 1.12 2003/06/10 22:30:16 kevin Exp $
+;;;; $Id$
;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2003 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
;;; Paths for files
-(defvar *umls-path*
- (make-pathname :directory '(:absolute "data" "umls" "2003AA"))
+(defparameter *release* "2006AD")
+
+(defparameter *umls-path*
+ (make-pathname :directory (list :absolute "srv" "umls" *release*))
"Path for base of UMLS data files")
-(defvar *meta-path*
- (merge-pathnames
- (make-pathname :directory '(:relative "META"))
- *umls-path*))
+(defparameter *meta-dir*
+ (make-pathname :directory '(:relative "META")))
+
+(defparameter *lex-dir*
+ (make-pathname :directory '(:relative "LEX")))
+
+(defparameter *net-dir*
+ (make-pathname :directory '(:relative "NET")))
-(defvar *lex-path*
- (merge-pathnames
- (make-pathname :directory '(:relative "LEX"))
- *umls-path*))
+(defparameter *meta-path*
+ (merge-pathnames *meta-dir* *umls-path*))
-(defvar *net-path*
- (merge-pathnames
- (make-pathname :directory '(:relative "NET"))
- *umls-path*))
+(defparameter *lex-path*
+ (merge-pathnames *lex-dir* *umls-path*))
+
+(defparameter *net-path*
+ (merge-pathnames *net-dir* *umls-path*))
(defun umls-path! (p)
- (setq *umls-path* p))
+ (setq *umls-path* (etypecase p
+ (string (parse-namestring p))
+ (pathname p)))
+ (setq *meta-path* (merge-pathnames *meta-dir* *umls-path*))
+ (setq *lex-path* (merge-pathnames *lex-dir* *umls-path*))
+ (setq *net-path* (merge-pathnames *net-dir* *umls-path*)))
;;; Structures for parsing UMLS text files
-
-(defparameter *umls-files* nil
+
+(defparameter *umls-files* nil
"List of umls file structures. Used when parsing text files.")
-(defparameter *umls-cols* nil
+(defparameter *umls-cols* nil
"List of meta column structures. Used when parsing text files.")
+;; Special variables
+
+(defvar *has-fixnum-class* (when (ignore-errors (find-class 'fixnum)) t))
+
+(defvar *octet-sql-storage* t
+ "Used to deciding field lengths. Use nil if using UTF-8 database encoding. But, UTF-8 will cause MySQL to double the bytes used for fixed field sizes.")
+
;; Preliminary objects to replace structures
(defclass ufile ()
- ((fil :initarg :fil :accessor fil)
+ ((subdir :initarg :subdir :accessor subdir)
+ (dir :initarg :dir :accessor dir)
+ (fil :initarg :fil :accessor fil)
(table :initarg :table :accessor table)
(des :initarg :des :accessor des)
(fmt :initarg :fmt :accessor fmt)
(fields :initarg :fields :accessor fields)
(ucols :initarg :ucols :accessor ucols))
(:default-initargs :fil nil :table nil :des nil :fmt nil :cls nil :rws nil :bts nil
- :fields nil :ucols nil)
+ :fields nil :ucols nil :subdir nil :dir nil)
(:documentation "UMLS File"))
(defclass ucol ()
(format s "~A" (col obj))))
-