-#ifndef IDF_H
-#define IDF_H
-
+/*****************************************************************************
+** FILE IDENTIFICATION
+**
+** Name: imagefile.h
+** Purpose: imagefile class header
+** Programmer: Kevin Rosenberg
+** Date Started: June 2000
+**
+** This is part of the CTSim program
+** Copyright (C) 1983-2000 Kevin Rosenberg
+**
+** $Id: imagefile.h,v 1.22 2000/12/16 06:12:47 kevin Exp $
+**
+** This program is free software; you can redistribute it and/or modify
+** it under the terms of the GNU General Public License (version 2) as
+** published by the Free Software Foundation.
+**
+** This program is distributed in the hope that it will be useful,
+** but WITHOUT ANY WARRANTY; without even the implied warranty of
+** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+** GNU General Public License for more details.
+**
+** You should have received a copy of the GNU General Public License
+** along with this program; if not, write to the Free Software
+** Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+******************************************************************************/
+
+#ifndef IMAGEFILE_H
+#define IMAGEFILE_H
+
+#ifndef MSVC\r
+#include <unistd.h>\r
+#endif\r
#include <string>
-#include "kstddef.h"
-#include <array2d.h>
-
-using namespace std;
+#include <sys/types.h>
+#include <fstream>
+#include <iostream>
+#include "ctsupport.h"
+#include "fnetorderstream.h"
+#include "array2dfile.h"
+
+#ifdef HAVE_MPI
+#include <mpi++.h>
+#endif
-class Array2dFileLabel
+class F32Image : public Array2dFile
{
-private:
- void init (void);
-
public:
- kfloat64 calc_time;
- kuint16 label_type;
- kuint16 year;
- kuint16 month;
- kuint16 day;
- kuint16 hour;
- kuint16 minute;
- kuint16 second;
- string label_str;
-
- static const int L_EMPTY = 0;
- static const int L_HISTORY = 1;
- static const int L_USER = 2;
-
- Array2dFileLabel();
-
- Array2dFileLabel(const char* const str, double ctime = 0.);
-
- Array2dFileLabel(const int type, const char* const str, double ctime = 0.);
+ F32Image (int nx, int ny);
+ F32Image (void);\r
- ~Array2dFileLabel();
+ kfloat32** getArray (void)
+ { return (kfloat32**) (m_arrayData); }
- const string& getLabelString (void) const
- { return label_str; }
+ const kfloat32* const * getArray (void) const
+ { return (const kfloat32**) (m_arrayData); }
- kfloat64 getCalcTime (void) const
- { return calc_time; }
-
- kfloat64 getLabelType (void) const
- { return label_type; }
+#ifdef HAVE_MPI
+ MPI::Datatype getMPIDataType (void) const
+ { return MPI::FLOAT; }
+#endif
- void getDateString (string& str) const;
+ private:
+ F32Image (const F32Image& rhs); //copy constructor
+ F32Image& operator= (const F32Image& rhs); // assignment operator
};
-template<class T>
-class Array2dFile
+class F64Image : public Array2dFile
{
-private:
- void init (void);
- kuint16 signature;
- kuint16 num_labels;
- kuint16 headersize;
- string filename;
- int file_id;
- iostream *io;
- bool bHeaderWritten;
- bool bDataWritten;
-
- bool headerWrite (void);
-
- bool headerRead (void);
-
- bool arrayDataRead (void);
-
- bool labelSeek (unsigned int label_num);
-
- kuint16 mPixelSize;
- kuint16 axis_increment_known;
- kfloat64 mIncX, mIncY;
- kuint16 axis_extent_known;
- kfloat64 mMinX, mMaxX, mMinY, mMaxY;
- kfloat64 mOffsetPV, mScalePV;
- kuint16 mPixelType;
- kuint32 mNX;
- kuint32 mNY;
-
-public:
-
- Array2d<T> *array;
-
- static const int INT8 = 1;
- static const int UINT8 = 2;
- static const int INT16 = 3;
- static const int UINT16 = 4;
- static const int INT32 = 5;
- static const int UINT32 = 6;
- static const int FLOAT32 = 7;
- static const int FLOAT64 = 8;
-
- Array2dFile (unsigned int nx, unsigned int ny);
- Array2dFile (const char* const filename);
- Array2dFile (const char* const filename, unsigned int nx, unsigned int ny);
- ~Array2dFile ();
-
- unsigned int getNumLabels (void) const
- { return num_labels; }
-
- bool labelRead (Array2dFileLabel& label, unsigned int label_num);
-
- void labelAdd (const Array2dFileLabel& label);
-
- void labelAdd (const char* const label_str, double calc_time=0.);
-
- void labelAdd (int type, const char* const label_str, double calc_time=0.);
-
- void fileClose (void);
-
- void setPixelType (int type)
- { mPixelType = type; }
-
- kuint32 nx (void) const
- { return mNX; }
-
- kuint32 ny (void) const
- { return mNY; }
-
- void setAxisIncrement (double mIncX, double mIncY);
-
- void setAxisExtent (double mMinX, double mMaxX, double mMinY, double mMaxY);
+ public:
- void getPixelValueRange (T& pvmin, T& pvmax);
-
- void doPixelOffsetScale (double offset, double scale);
+ F64Image (int nx, int ny);
+ F64Image (void);
- T** getArray (void) const
- { return (array == NULL ? NULL : array->getArray()); }
+ kfloat64** getArray (void)
+ { return (kfloat64**) (m_arrayData); }
- bool arrayDataWrite (void);
+ const kfloat64* const * getArray (void) const
+ { return (const kfloat64**) (m_arrayData); }
- bool fileRead (void);
-
- bool fileCreate (void);
-
- const string& GetFilename (void) const
- { return filename; }
+#ifdef HAVE_MPI
+ MPI::Datatype getMPIDataType (void) const
+ { return MPI::DOUBLE; }
+#endif
+ private:
+ F64Image (const F64Image& rhs); //copy constructor
+ F64Image& operator= (const F64Image& rhs); // assignment operator
};
-
-template<class T>
-Array2dFile<T>::Array2dFile (unsigned int x, unsigned int y)
-{
- init();
- mNX = x;
- mNY = y;
- array = new Array2d<T> (mNX, mNY);
-}
-
-template<class T>
-Array2dFile<T>::Array2dFile (const char * const str, unsigned int x, unsigned int y)
- : filename(str)
-{
- init();
- mNX = x;
- mNY = y;
- array = new Array2d<T> (mNX, mNY);
-}
-
-template<class T>
-Array2dFile<T>::Array2dFile (const char * const str)
- : filename(str)
-{
- init();
-}
-
-template<class T>
-void
-Array2dFile<T>::init (void)
-{
- mPixelSize = sizeof(T);
- signature = ('I' * 256 + 'F');
- file_id = -1;
- mNX = 0;
- mNY = 0;
- headersize = 0;
- num_labels = 0;
- axis_increment_known = false;
- axis_extent_known = false;
- mIncX = mMinY = 0;
- mMinX = mMaxX = mMinY = mMaxY = 0;
- mOffsetPV = 0;
- mScalePV = 1;
- array = NULL;
- io = NULL;
-
-#if 0
- const type_info& t_id = typeid(T);
- cout << t_id.name() << endl;
- const type_info& comp_id = typeid(T);
-
- if (t_id == comp_id)
- mPixelType = FLOAT64;
- else if (t_id == typeid(kfloat32))
- mPixelType = FLOAT32;
- else if (t_id == typeid(kint32))
- mPixelType = INT32;
- else if (t_id == typeid(kuint32))
- mPixelType = UINT32;
- else if (t_id == typeid(kint16))
- mPixelType = INT16;
- else if (t_id == typeid(kuint16))
- mPixelType = UINT16;
- else if (t_id == typeid(kint8))
- mPixelType = INT8;
- else if (t_id == typeid(kuint8))
- mPixelType = UINT8;
- else
+#undef IMAGEFILE_64_BITS
+#ifdef IMAGEFILE_64_BITS
+typedef F64Image ImageFileBase;
+typedef kfloat64 ImageFileValue;
+typedef kfloat64* ImageFileColumn;
+typedef kfloat64** ImageFileArray;
+typedef const kfloat64* const * ImageFileArrayConst;
+#else
+typedef F32Image ImageFileBase;
+typedef kfloat32 ImageFileValue;
+typedef kfloat32* ImageFileColumn;
+typedef kfloat32** ImageFileArray;
+typedef const kfloat32* const * ImageFileArrayConst;
#endif
- mPixelType = 0;
-
- bHeaderWritten = false;
- bDataWritten = false;
-}
-
-template<class T>
-Array2dFile<T>::~Array2dFile (void)
-{
- fileClose ();
-}
-template<class T>
-void
-Array2dFile<T>::fileClose (void)
+class ImageFile : public ImageFileBase
{
- headerWrite ();
- if (file_id >= 0 && array != NULL) {
- arrayDataWrite ();
- close (file_id);
- file_id = -1;
- }
-}
+ public:
+ ImageFile (int nx, int ny)
+ : ImageFileBase (nx, ny)
+ {}
-template<class T>
-bool
-Array2dFile<T>::fileCreate (void)
-{
- // io = new iostream(filename, ios::out | ios::in | ios::trunc | io::binary);
- if ((file_id = open (filename.c_str(), O_RDWR | O_CREAT | O_TRUNC | O_BINARY, S_IRUSR | S_IWUSR | S_IRGRP | S_IROTH)) < 0) {
- sys_error (ERR_WARNING, "Error opening file %s for writing [fileCreate]", filename.c_str());
- return (false);
- }
- headerWrite();
- return (true);
-}
+ ImageFile (void)
+ : ImageFileBase ()
+ {}
-template<class T>
-bool
-Array2dFile<T>::fileRead (void)
-{
- // io = new iostream(filename, ios::out | ios::in | io::binary);
- if ((file_id = open (filename.c_str(), O_RDONLY | O_BINARY)) < 0) {
- sys_error (ERR_WARNING, "Unable to open file %s [fileRead]", filename.c_str());
- return (false);
- }
+ void filterResponse (const char* const domainName, double bw, const char* const filterName, double filt_param);
- headerRead();
- if (array != NULL)
- delete array;
+ void statistics (double& min, double& max, double& mean, double& mode, double& median, double& stddev) const;
- array = new Array2d<T> (mNX, mNY);
+ void getMinMax (double& min, double& max) const;
- arrayDataRead();
+ void printStatistics (std::ostream& os) const;
- return (true);
-}
+ bool comparativeStatistics (const ImageFile& imComp, double& d, double& r, double& e) const;
-template<class T>
-void
-Array2dFile<T>::setAxisIncrement (double incX, double incY)
-{
- axis_increment_known = true;
- mIncX = incX;
- mIncY = incY;
-}
+ bool printComparativeStatistics (const ImageFile& imComp, std::ostream& os) const;
-template<class T>
-void
-Array2dFile<T>::setAxisExtent (double minX, double maxX, double minY, double maxY)
-{
- axis_extent_known = true;
- mMinX = minX;
- mMaxY = maxX;
- mMinX = minX;
- mMaxY = maxY;
-}
-
-template<class T>
-void
-Array2dFile<T>::getPixelValueRange (T& pvmin, T& pvmax)
-{
- if (array != NULL) {
- T** da = array.GetArray();
- pvmax = pvmin = da[0][0];
- for (int ix = 0; ix < mNX; ix++)
- for (int iy = 0; iy < mNY; iy++)
- if (pvmax < da[ix][iy])
- pvmax = da[ix][iy];
- else if (pvmin > da[ix][iy])
- pvmin = da[ix][iy];
- }
-}
-
-template<class T>
-void
-Array2dFile<T>::doPixelOffsetScale (double offset, double scale)
-{
- if (adf != NULL) {
- mOffsetPV = offset;
- mScalePV = scale;
-
- T** ad = adf->getArray();
- for (unsigned int ix = 0; ix < mNX; ix++)
- for (unsigned int iy = 0; iy < mNY; iy++)
- ad[ix][iy] = (ad[ix][iy] - offset) * scale;
- }
-}
-
-template<class T>
-bool
-Array2dFile<T>::headerRead (void)
-{
- if (file_id < 0) {
- sys_error (ERR_WARNING, "Tried to read header with file closed [headerRead]");
- return (false);
- }
-
- lseek (file_id, 0, SEEK_SET);
- kuint16 file_signature;
- kuint16 file_mPixelSize;
- kuint16 file_mPixelType;
-
- read_nint16 (&headersize, file_id);
- read_nint16 (&file_signature, file_id);
- read_nint16 (&num_labels, file_id);
- read_nint16 (&file_mPixelType, file_id);
- read_nint16 (&file_mPixelSize, file_id);
- read_nint32 (&mNX, file_id);
- read_nint32 (&mNY, file_id);
- read_nint16 (&axis_increment_known, file_id);
- read_nfloat64 (&mIncX, file_id);
- read_nfloat64 (&mIncY, file_id);
- read_nint16 (&axis_extent_known, file_id);
- read_nfloat64 (&mMinX, file_id);
- read_nfloat64 (&mMaxX, file_id);
- read_nfloat64 (&mMinY, file_id);
- read_nfloat64 (&mMaxY, file_id);
- read_nfloat64 (&mOffsetPV, file_id);
- read_nfloat64 (&mScalePV, file_id);
-
- int read_headersize = lseek (file_id, 0, SEEK_CUR);
- if (read_headersize != headersize) {
- sys_error (ERR_WARNING, "Read headersize %d != file headersize %d", read_headersize, headersize);
- return (false);
- }
- if (file_signature != signature) {
- sys_error (ERR_WARNING, "File signature %d != true signature %d", file_signature, signature);
- return (false);
- }
- if (file_mPixelType != mPixelType) {
- sys_error (ERR_WARNING, "File pixel type %d != class pixel type %d", file_mPixelType, mPixelType);
- return (false);
- }
- if (file_mPixelSize != mPixelSize) {
- sys_error (ERR_WARNING, "File pixel size %d != class pixel size %d", file_mPixelSize, mPixelSize);
- return (false);
- }
-
- return (true);
-}
-
-template<class T>
-bool
-Array2dFile<T>::headerWrite (void)
-{
- if (file_id < 0) {
- sys_error (ERR_WARNING, "Tried to write header with file closed");
- return (false);
- }
-
- lseek (file_id, 0, SEEK_SET);
- write_nint16 (&headersize, file_id);
- write_nint16 (&signature, file_id);
- write_nint16 (&num_labels, file_id);
- write_nint16 (&mPixelType, file_id);
- write_nint16 (&mPixelSize, file_id);
- write_nint32 (&mNX, file_id);
- write_nint32 (&mNY, file_id);
- write_nint16 (&axis_increment_known, file_id);
- write_nfloat64 (&mIncX, file_id);
- write_nfloat64 (&mIncY, file_id);
- write_nint16 (&axis_extent_known, file_id);
- write_nfloat64 (&mMinX, file_id);
- write_nfloat64 (&mMaxX, file_id);
- write_nfloat64 (&mMinY, file_id);
- write_nfloat64 (&mMaxY, file_id);
- write_nfloat64 (&mOffsetPV, file_id);
- write_nfloat64 (&mScalePV, file_id);
-
- headersize = lseek (file_id, 0, SEEK_CUR);
- lseek (file_id, 0, SEEK_SET);
- write_nint16 (&headersize, file_id);
-
- return (true);
-}
-
-template<class T>
-bool
-Array2dFile<T>::arrayDataWrite (void)
-{
- if (file_id < 0) {
- sys_error (ERR_WARNING, "Tried to arrayDataWrite with file_id < 0");
- return (false);
- }
-
- lseek (file_id, headersize, SEEK_SET);
- for (unsigned int ix = 0; ix < mNX; ix++)
- for (unsigned int iy = 0; iy < mNY; iy++) {
- T value = array->array_data[ix][iy];
- ConvertNetworkOrder (&value, sizeof(T));
- write (file_id, &value, mPixelSize);
- }
-
- return (true);
-}
-
-template<class T>
-bool
-Array2dFile<T>::arrayDataRead (void)
-{
- if (file_id < 0) {
- sys_error (ERR_WARNING, "Tried to arrayDataRead with file_id < 0");
- return (false);
- }
-
- lseek (file_id, headersize, SEEK_SET);
- T pixelBuffer;
- for (int ix = 0; ix < mNX; ix++)
- for (unsigned int iy = 0; iy < mNY; iy++) {
- read (file_id, &pixelBuffer, mPixelSize);
- ConvertNetworkOrder (&pixelBuffer, sizeof(T));
- array->array_data[ix][iy] = pixelBuffer;
- }
-
- return (true);
-}
-
-template<class T>
-bool
-Array2dFile<T>::labelSeek (unsigned int label_num)
-{
- if (label_num > num_labels) {
- sys_error (ERR_WARNING, "label_num %d > num_labels %d [labelSeek]");
- return (false);
- }
-
- if (array == NULL) { // Could not have written data if array not allocated
- sys_error (ERR_WARNING, "array == NULL [labelSeek]");
- return (false);
- }
-
- off_t pos = headersize + array->sizeofArray();
- if (lseek (file_id, pos, SEEK_SET) != pos) {
- sys_error (ERR_WARNING, "Can't seek to end of data array");
- return (false);
- }
-
- for (int i = 0; i < label_num; i++)
- {
- pos += 22; // Skip to string length
- if (lseek (file_id, pos, SEEK_SET) != pos) {
- sys_error (ERR_WARNING, "Can't seek to string length");
- return (false);
- }
- kuint16 strlength;
- read_nint16 (&strlength, file_id);
- pos += 2 + strlength; // Skip label string length + data
- if (lseek (file_id, pos, SEEK_SET) != pos) {
- sys_error (ERR_WARNING, "Can't seek past label string");
- return (false);
- }
- }
-
- return (true);
-}
-
-template<class T>
-bool
-Array2dFile<T>::labelRead (Array2dFileLabel& label, unsigned int label_num)
-{
- if (label_num >= num_labels) {
- sys_error (ERR_WARNING, "Trying to read past number of labels [labelRead]");
- return (false);
- }
-
- if (! labelSeek (label_num)) {
- sys_error (ERR_WARNING, "Error calling labelSeek");
- return (false);
- }
-
- read_nint16 (&label.label_type, file_id);
- read_nint16 (&label.year, file_id);
- read_nint16 (&label.month, file_id);
- read_nint16 (&label.day, file_id);
- read_nint16 (&label.hour, file_id);
- read_nint16 (&label.minute, file_id);
- read_nint16 (&label.second, file_id);
- read_nfloat64 (&label.calc_time, file_id);
-
- kuint16 strlength;
- read_nint16 (&strlength, file_id);
- char *str = new char [strlength+1];
- read (file_id, str, strlength);
- label.label_str = str;
-
- return (true);
-}
-
-
-template<class T>
-void
-Array2dFile<T>::labelAdd (const char* const lstr, double calc_time=0.)
-{
- labelAdd (Array2dFileLabel::L_HISTORY, lstr, calc_time);
-}
-
-template<class T>
-void
-Array2dFile<T>::labelAdd (int type, const char* const lstr, double calc_time=0.)
-{
- Array2dFileLabel label (type, lstr, calc_time);
-
- labelAdd (label);
-}
-
-template<class T>
-void
-Array2dFile<T>::labelAdd (const Array2dFileLabel& label)
-{
- labelSeek (num_labels);
-
- write_nint16 (&label.label_type, file_id);
- write_nint16 (&label.year, file_id);
- write_nint16 (&label.month, file_id);
- write_nint16 (&label.day, file_id);
- write_nint16 (&label.hour, file_id);
- write_nint16 (&label.minute, file_id);
- write_nint16 (&label.second, file_id);
- write_nfloat64 (&label.calc_time, file_id);
- kuint16 strlength = label.label_str.length();
- write_nint16 (&strlength, file_id);
- write (file_id, static_cast<const void*>(label.label_str.c_str()), strlength);
-
- num_labels++;
-
- headerWrite();
- fsync(file_id);
-}
+ int display (void) const;
+ int displayScaling (const int scaleFactor, ImageFileValue pmin, ImageFileValue pmax) const;
+#if HAVE_PNG
+ void writeImagePNG (const char *outfile, int bitdepth, int nxcell, int nycell, double densmin, double densmax);
#endif
-
-#ifdef MPI_CT
-#include <mpi.h>
-#endif
-
-class F32Image
-{
-public:
- Array2dFile<kfloat32> adf;
-
- F32Image (const char* const fname, unsigned int nx, unsigned int ny) : adf (fname, nx, ny)
- {
- adf.setPixelType (Array2dFile<kfloat64>::FLOAT32);
- }
-
- F32Image (unsigned int nx, unsigned int ny) : adf (nx, ny)
- {
- adf.setPixelType (Array2dFile<kfloat64>::FLOAT32);
- }
-
- F32Image (const char* const fname) : adf (fname)
- {
- adf.setPixelType (Array2dFile<kfloat64>::FLOAT32);
- }
-
-#ifdef MPI_CT
- MPI_Datatype getMPIDataType (void) const
- { return MPI_FLOAT; }
+#if HAVE_GD
+ void writeImageGIF (const char *outfile, int nxcell, int nycell, double densmin, double densmax);
#endif
+ void writeImagePGM (const char *outfile, int nxcell, int nycell, double densmin, double densmax);
+ void writeImagePGMASCII (const char *outfile, int nxcell, int nycell, double densmin, double densmax);
};
-class F64Image
-{
-public:
- Array2dFile<kfloat64> adf;
-#ifdef MPI_CT
- MPI_Datatype getMPIDataType (void) const
- { return MPI_DOUBLE; }
#endif
-
- F64Image (const char* const fname, unsigned int nx, unsigned int ny) : adf (fname, nx, ny)
- {
- adf.setPixelType (Array2dFile<kfloat64>::FLOAT64);
- }
-
- F64Image (unsigned int nx, unsigned int ny) : adf (nx, ny)
- {
- adf.setPixelType (Array2dFile<kfloat64>::FLOAT64);
- }
-
- F64Image (const char* const fname) : adf (fname)
- {
- adf.setPixelType (Array2dFile<kfloat64>::FLOAT64);
- }
-};
-
-typedef F64Image ImageFile;
-typedef kfloat64 ImageFileValue;
-typedef kfloat64* ImageFileColumn;
-typedef kfloat64** ImageFileArray;
-
-
-