;;;; Author: Kevin M. Rosenberg
;;;; Created: Apr 2000
;;;;
-;;;; $Id$
-;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2010 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
(concatenate 'string (second name-list) (or extension "")))))
(merge-pathnames
(make-pathname :name name :type type
- :directory (cons :relative dirs))
+ :directory (cons :relative dirs))
*umls-path*)))
(defun umls-pathname (filename &optional (extension ""))
(dolist (length-list (ufiles-field-lengths (ufiles-to-measure)))
(destructuring-bind (filename fields-max fields-av) length-list
(let ((file (find-ufile filename)))
- (unless file
- (error "Can't find ~A filename in ufiles" filename))
- (unless (= (length fields-max) (length (fields file)))
- (error
- "Number of file fields ~A not equal to field count in ufile ~S"
- fields-max file))
- (dotimes (i (length (fields file)))
- (declare (fixnum i))
- (let* ((field (nth i (fields file)))
- (col (find-ucol field filename)))
- (unless col
- (error "can't find column ~A" field))
- (setf (cmax col) (aref fields-max i))
- (setf (av col) (aref fields-av i))
- (ensure-ucol-datatype col (datatype-for-colname (col col)))))))))
+ (unless file
+ (error "Can't find ~A filename in ufiles" filename))
+ (unless (= (length fields-max) (length (fields file)))
+ (error
+ "Number of file fields ~A not equal to field count in ufile ~S"
+ fields-max file))
+ (dotimes (i (length (fields file)))
+ (declare (fixnum i))
+ (let* ((field (nth i (fields file)))
+ (col (find-ucol field filename)))
+ (unless col
+ (error "can't find column ~A" field))
+ (setf (cmax col) (aref fields-max i))
+ (setf (av col) (aref fields-av i))
+ (ensure-ucol-datatype col (datatype-for-colname (col col)))))))))
(defun ufiles-to-measure ()
"Returns a list of ufiles to measure"
(loop for ufile in *umls-files*
- unless (or (char= #\M (schar (fil ufile) 0))
- (char= #\m (schar (fil ufile) 0)))
+ unless (or (char= #\M (schar (fil ufile) 0))
+ (char= #\m (schar (fil ufile) 0)))
collect ufile))
(declare (fixnum count-lines))
(with-umls-ufile (line ufile)
(unless num-fields
- (setq num-fields (length line))
- (setq fields-max (make-array num-fields :element-type 'fixnum
- :initial-element 0))
- (setq fields-av (make-array num-fields :element-type '(or integer float)
- :initial-element 0)))
+ (setq num-fields (length line))
+ (setq fields-max (make-array num-fields :element-type 'fixnum
+ :initial-element 0))
+ (setq fields-av (make-array num-fields :element-type '(or integer float)
+ :initial-element 0)))
(dotimes (i num-fields)
- (declare (fixnum i))
- (let* ((str (nth i line))
+ (declare (fixnum i))
+ (let* ((str (nth i line))
(len (length #-(and clisp unicode) str
#+(and clisp unicode)
(if *octet-sql-storage*
(ext:convert-string-to-bytes str charset:utf-8)
str))))
#-(and clisp unicode) (declare (string str))
- (declare (type (integer 0 10000000) len))
- (incf (aref fields-av i) len)
- (when (> len (aref fields-max i))
- (setf (aref fields-max i) len))))
+ (declare (type (integer 0 100000000) len))
+ (incf (aref fields-av i) len)
+ (when (> len (aref fields-max i))
+ (setf (aref fields-max i) len))))
(incf count-lines))
(dotimes (i num-fields)
(setf (aref fields-av i) (float (/ (aref fields-av i) count-lines))))
"Returns list of umls-col structure for a column name and a filename"
(dolist (ucol ucols nil)
(when (and (string-equal filename (fil ucol))
- (string-equal colname (col ucol)))
+ (string-equal colname (col ucol)))
(return-from find-ucol-of-colname ucol))))
(defun ensure-col-in-columns (colname filename ucols)
(defun make-ucol-for-column (colname filename ucols)
;; try to find column name without a terminal digit
(let* ((len (length colname))
- (last-digit? (digit-char-p (schar colname (1- len))))
- (base-colname (if last-digit?
- (subseq colname 0 (1- len))
- colname))
- (ucol (when last-digit?
- (find-ucol-of-colname base-colname filename ucols))))
+ (last-digit? (digit-char-p (schar colname (1- len))))
+ (base-colname (if last-digit?
+ (subseq colname 0 (1- len))
+ colname))
+ (ucol (when last-digit?
+ (find-ucol-of-colname base-colname filename ucols))))
(when (and last-digit? (null ucol))
(error "Couldn't find a base column for col ~A in file ~A"
- colname filename))
+ colname filename))
(copy-or-new-ucol colname filename ucol)))
(defun copy-or-new-ucol (colname filename ucol)
nil)
(function
(if (compiled-function-p fun)
- fun
- (compile nil fun)))
+ fun
+ (compile nil fun)))
(list
(compile nil fun))))
(defun make-ucol (col des ref min av max fil dty
- &key (sqltype "VARCHAR") (parse-fun #'add-sql-quotes)
- (quote-str "'") (custom-value-fun))
+ &key (sqltype "VARCHAR") (parse-fun #'add-sql-quotes)
+ (quote-str "'") (custom-value-fun))
(let ((ucol (make-instance
- 'ucol
- :col col :des des :ref ref :min min :av av
- :max (if (eql max 0) 1 max) ;; ensure at least one char wide
- :fil fil
- :dty dty
- :sqltype sqltype
- :quote-str quote-str
- :parse-fun (ensure-compiled-fun parse-fun)
- :custom-value-fun (ensure-compiled-fun custom-value-fun))))
+ 'ucol
+ :col col :des des :ref ref :min min :av av
+ :max (if (eql max 0) 1 max) ;; ensure at least one char wide
+ :fil fil
+ :dty dty
+ :sqltype sqltype
+ :quote-str quote-str
+ :parse-fun (ensure-compiled-fun parse-fun)
+ :custom-value-fun (ensure-compiled-fun custom-value-fun))))
(ensure-ucol-datatype ucol (datatype-for-colname col))
ucol))
"Returns list of umls-cols for a file structure"
(loop for colname in (fields ufile)
collect (find-ucol colname
- (if (subdir ufile)
- (concatenate 'string (subdir ufile) "/" (fil ufile))
- (fil ufile)))))
+ (if (subdir ufile)
+ (concatenate 'string (subdir ufile) "/" (fil ufile))
+ (fil ufile)))))
(defun umls-field-string-to-list (fmt)
"Converts a comma delimited list of fields into a list of field names. Will
append a unique number (starting at 2) onto a column name that is repeated in the list"
(let ((col-counts (make-hash-table :test 'equal)))
(loop for colname in (delimited-string-to-list (escape-column-name fmt) #\,)
- collect
- (multiple-value-bind (value found) (gethash colname col-counts)
- (cond
- (found
- (incf (gethash colname col-counts))
- (concatenate 'string colname (write-to-string (1+ value))))
- (t
- (setf (gethash colname col-counts) 1)
- colname))))))
+ collect
+ (multiple-value-bind (value found) (gethash colname col-counts)
+ (cond
+ (found
+ (incf (gethash colname col-counts))
+ (concatenate 'string colname (write-to-string (1+ value))))
+ (t
+ (setf (gethash colname col-counts) 1)
+ colname))))))
(defun decompose-fil (fil)
(if fil
(let ((pos (position #\/ fil)))
- (if pos
- (values (subseq fil (1+ pos)) (subseq fil 0 pos))
- (values fil nil)))
+ (if pos
+ (values (subseq fil (1+ pos)) (subseq fil 0 pos))
+ (values fil nil)))
(values nil nil)))
(defun filename-to-tablename (file)
(defun make-ufile (dir fil des cls rws bts fields)
(multiple-value-bind (file subdir) (decompose-fil fil)
(let ((ufile (make-instance 'ufile :dir dir :fil file :subdir subdir
- :des des :cls cls
- :rws rws :bts bts :fields fields
- :table (filename-to-tablename file))))
+ :des des :cls cls
+ :rws rws :bts bts :fields fields
+ :table (filename-to-tablename file))))
ufile)))
(defun set-ucols-for-ufiles (ufiles)
(setf (datatype col) datatype)
(case datatype
(sql-u (setf (sqltype col) (canonicalize-column-type "INTEGER")
- (parse-fun col) #'parse-ui
- (quote-str col) ""))
+ (parse-fun col) #'parse-ui
+ (quote-str col) ""))
(sql-s (setf (sqltype col) (canonicalize-column-type "SMALLINT")
- (parse-fun col) #'parse-integer
- (quote-str col) ""))
+ (parse-fun col) #'parse-integer
+ (quote-str col) ""))
(sql-l (setf (sqltype col) (canonicalize-column-type "BIGINT")
- (parse-fun col) #'parse-integer
- (quote-str col) ""))
+ (parse-fun col) #'parse-integer
+ (quote-str col) ""))
(sql-i (setf (sqltype col) (canonicalize-column-type "INTEGER")
- (parse-fun col) #'parse-integer
- (quote-str col) ""))
+ (parse-fun col) #'parse-integer
+ (quote-str col) ""))
(sql-t (setf (sqltype col) (canonicalize-column-type "TINYINT")
- (parse-fun col) #'parse-integer
- (quote-str col) ""))
+ (parse-fun col) #'parse-integer
+ (quote-str col) ""))
(sql-f (setf (sqltype col) (canonicalize-column-type "NUMERIC")
- (parse-fun col) #'read-from-string
- (quote-str col) ""))
- (t ; Default column type, optimized text storage
+ (parse-fun col) #'read-from-string
+ (quote-str col) ""))
+ (t ; Default column type, optimized text storage
(setf (parse-fun col) #'add-sql-quotes
- (quote-str col) "'")
+ (quote-str col) "'")
(when (and (cmax col) (av col))
(if (> (cmax col) 255)
- (setf (sqltype col) (canonicalize-column-type "TEXT"))
- (setf (sqltype col) (canonicalize-column-type "VARCHAR")))))))
+ (setf (sqltype col) (canonicalize-column-type "TEXT"))
+ (setf (sqltype col) (canonicalize-column-type "VARCHAR")))))))
(defun escape-column-name (name)
(substitute #\_ #\/ name))