;;;; Author: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: sql-classes.lisp,v 1.19 2003/05/02 22:30:34 kevin Exp $
+;;;; $Id: sql-classes.lisp,v 1.48 2003/05/03 21:27:59 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
(defun current-srl! (srl)
(setq *current-srl* srl))
-
(defmacro with-umlisp-query ((table fields srl where-name where-value
&key (lrlname "KCUILRL") distinct single
order like)
&body body)
- (let ((query (gensym)))
+ (if single
+ `(unless (and ,where-name (not ,where-value))
+ (let ((tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,where-value
+ :lrlname ,lrlname :single ,single
+ :distinct ,distinct :order ,order :like ,like))))
+ (when tuple
+ (destructuring-bind ,fields tuple
+ ,@body))))
`(unless (and ,where-name (not ,where-value))
- (let ((,query (umlisp-query ,table ,fields ,srl ,where-name ,where-value
- :lrlname ,lrlname :single ,single :distinct ,distinct
- :order ,order :like ,like)))
- (if ,single
- (let ((tuple (car ,query)))
- (when tuple
- (destructuring-bind ,fields tuple
- ,@body)))
- (loop
- for tuple in ,query collect
- (destructuring-bind ,fields tuple
- ,@body)))))))
-
-(defun umlisp-query (table fields srl where-name where-value
+ (loop for tuple in
+ (umlisp-query ,table ,fields ,srl ,where-name ,where-value
+ :lrlname ,lrlname :single ,single :distinct ,distinct :order ,order :like ,like)
+ collect (destructuring-bind ,fields tuple
+ ,@body)))))
+
+(defmacro umlisp-query (table fields srl where-name where-value
&key (lrlname "KCUILRL") single distinct order like)
"Query the UMLisp database. Return a list of umlisp objects whose name
is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
- (when (or (not where-name) where-value)
+ `(when (or (not ,where-name) ,where-value)
(mutex-sql-query
- (query-string table fields srl where-name where-value
- :lrlname lrlname :single single :distinct distinct :order order :like like))))
+ (query-string-macro ,table ,fields ,srl ,where-name ,where-value
+ :lrlname ,lrlname :single ,single :distinct ,distinct :order ,order :like ,like))))
+(defmacro query-string-macro (table fields &optional srl where-name where-value
+ &key (lrlname "KCUILRL") single distinct order like)
+ (let* ((%%fields (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
+ (if distinct "distinct " "") fields table))
+ (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) ""))
+ (%%lrl (format nil " and ~:@(~A~)<=" lrlname))
+ (%%where (format nil " where ~:@(~A~)~A" where-name
+ (if like " like " "="))))
+ `(concatenate
+ 'string
+ ,%%fields
+ ,@(when %%where (list %%where))
+ (if (quote ,where-name)
+ (if (numberp ,where-value)
+ (write-to-string ,where-value)
+ (format nil ,(if like "'%~A%'" "'~A'") ,where-value))
+ "")
+ (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "")
+ ,@(when %%order (list %%order))
+ ,@(when single (list " limit 1")))))
+
(defun query-string (table fields &optional srl where-name where-value
&key (lrlname "KCUILRL") single distinct order like)
- (let ((qs (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
- (if distinct "distinct " "")
- fields table)))
- (when where-name
- (setq qs (concatenate 'string qs
- (format nil
- (if (stringp where-value)
- (if like
- " where ~A like '%~A%'"
- " where ~A='~A'")
- " where ~A=~A")
- where-name where-value))))
- (when srl
- (setq qs (concatenate 'string qs (format nil " and ~:@(~A~) <= ~D"
- lrlname srl))))
- (when order
- (setq qs (concatenate 'string qs
- (format nil " order by ~{~:@(~A) ~A~^,~}"
- (flatten
- (loop for o in order
- collect
- (if (atom o)
- (list o 'asc)
- o)))))))
- (when single
- (setq qs (concatenate 'string qs " limit 1")))
- qs))
+ (concatenate
+ 'string
+ (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
+ (if distinct "distinct " "") fields table)
+ (if where-name
+ (format nil
+ (if (stringp where-value)
+ (if like
+ " where ~A like '%~A%'"
+ " where ~A='~A'")
+ " where ~A=~A")
+ where-name where-value)
+ "")
+ (if srl (format nil " and ~:@(~A~) <= ~D" lrlname srl) "")
+ (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) "")
+ (if single " limit 1" "")))
(defun find-ucon-cui (cui &key (srl *current-srl*))
"Find ucon for a cui"
- (with-umlisp-query ('mrcon (kpfstr kcuilrl) srl 'cui (parse-cui cui) :single t)
+ (with-umlisp-query (mrcon (kpfstr kcuilrl) srl cui (parse-cui cui) :single t)
(make-instance 'ucon :cui (parse-cui cui)
- :pfstr kpfstr2
+ :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
+(defun find-ucon-cui-old (cui &key (srl *current-srl*))
+ "Find ucon for a cui"
+ (when (stringp cui) (setq cui (parse-cui cui)))
+ (when cui
+ (let ((ls (format nil "select KPFSTR,KCUILRL from MRCON where CUI=~d" cui)))
+ (when srl
+ (string-append ls (format nil " and KCUILRL <= ~d" srl)))
+ (string-append ls " limit 1")
+ (let ((tuple (car (mutex-sql-query ls))))
+ (destructuring-bind (kpfstr kcuilrl) tuple
+ (make-instance 'ucon :cui cui :pfstr kpfstr
+ :lrl (ensure-integer kcuilrl)))))))
(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*))
"Find ucon for a cui"
(with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'lui (parse-lui lui) :distinct t)
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr kpfstr
- :lrl (ensure-integer lrl))))
+ :lrl (ensure-integer kcuilrl))))
(defun find-ucon-sui (sui &key (srl *current-srl*))
"Find list of ucon for sui"
(with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'sui (parse-sui sui) :distinct t)
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr kpfstr
- :lrl (ensure-integer kcuilrl)))))
+ :lrl (ensure-integer kcuilrl))))
(defun find-ucon-cuisui (cui sui &key (srl *current-srl*))
"Find ucon for cui/sui"
(defun find-ucon-str (str &key (srl *current-srl*))
"Find ucon that are exact match for str"
(with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'str str :distinct t)
- (make-instance 'ucon :cui (ensure-integer cui)
- :pfstr kpfstr
+ (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-all (&key (srl *current-srl*))
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr pfstr
:lrl (ensure-integer cuilrl)))
- (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil :order '((cui asc)) :distinct t)
+ (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil
+ :order '(cui asc) :distinct t)
:database db)))
(defun map-ucon-all (fn &key (srl *current-srl*))
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr pfstr
:lrl (ensure-integer cuilrl))))
- (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil :order '((cui asc)) :distinct t)
+ (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil :order '(cui asc) :distinct t)
:database db)))
"Return a list of urel for cui2"
(with-umlisp-query ('mrrel (rel cui1 rela sab sl mg kpfstr2) srl 'cui2 (parse-cui cui2) :lrlname "KSRL")
(make-instance 'urel :cui2 (parse-cui cui2) :rel rel :cui1 (ensure-integer cui1) :rela rela
- :sab sab :sl sl :mg mg :pfstr2 kpfstr2))))
+ :sab sab :sl sl :mg mg :pfstr2 kpfstr2)))
(defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*))
(mapcar
(defun find-ucoc-cui (cui &key (srl *current-srl*))
"Return a list of ucoc for cui"
(with-umlisp-query ('mrcoc (cui2 soc cot cof coa kpfstr2) srl 'cui1 (parse-cui cui)
- :lrlname "KSRL" :order '((cof asc)))
+ :lrlname "KSRL" :order '(cof asc))
(setq cui2 (ensure-integer cui2))
(when (zerop cui2) (setq cui2 nil))
(make-instance 'ucoc :cui1 (parse-cui cui) :cui2 (ensure-integer cui2) :soc soc :cot cot
(defun find-ucoc-cui2 (cui2 &key (srl *current-srl*))
"Return a list of ucoc for cui2"
(with-umlisp-query ('mrcoc (cui1 soc cot cof coa kpfstr2) srl 'cui2 (parse-cui cui2)
- :lrlname "KSRL" :order '((cof asc)))
+ :lrlname "KSRL" :order '(cof asc))
(setq cui2 (ensure-integer cui2))
(when (zerop cui2) (setq cui2 nil))
(make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 (parse-cui cui2) :soc soc :cot cot
(with-umlisp-query ('mrcon (lui lat ts kluilrl) srl 'cui (parse-cui cui) :lrlname 'kluilrl
:distinct t)
(make-instance 'uterm :lui (ensure-integer lui) :cui (parse-cui cui)
- :lat lat :ts ts :lrl (ensure-integer lrl))))
+ :lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-lui (lui &key (srl *current-srl*))
"Return a list of uterm for lui"
(make-instance 'uterm :cui (ensure-integer cui) :lui (parse-lui lui)
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
-
(defun find-uterm-cuilui (cui lui &key (srl *current-srl*))
"Return single uterm for cui/lui"
(with-umlisp-query ('mrcon (lat ts kluilrl) srl 'kcuilui
(make-cuilui (parse-cui cui) (parse-lui lui))
:lrlname 'kluilrl :single t)
- (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts :lrl (ensure-integer kluilrl)))))
+ (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-ustr-cuilui (cui lui &key (srl *current-srl*))
"Return a list of ustr for cui/lui"
(defun find-ustr-sab (sab &key (srl *current-srl*))
"Return the list of ustr for sab"
- (with-umlisp-query ('mrso '(kcuisui) srl 'sab sab :lrlname 'srl)
- (let ((cuisui (ensure-integer (car tuple))))
+ (with-umlisp-query ('mrso (kcuisui) srl 'sab sab :lrlname 'srl)
+ (let ((cuisui (ensure-integer kcuisui)))
(apply #'find-ustr-cuisui
(append
(multiple-value-list (decompose-cuisui cuisui)) (list :srl srl))))))
:lrl lrl
:str pfstr))
(query-string 'mrcon '(cui lui sui stt lrl kpfstr) srl nil nil :lrlname 'lrl :distinct t
- :order '((sui asc)))
+ :order '(sui asc))
:database db)))
(defun find-string-sui (sui &key (srl *current-srl*))
"Return the string associated with sui"
- (with-umlisp-query ('mrcon '(str) srl 'sui sui :lrlname 'lrl :single t)
- (car tuple)))
+ (with-umlisp-query ('mrcon (str) srl 'sui sui :lrlname 'lrl :single t)
+ str))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
(with-umlisp-query ('mrso (sab code srl tty) srl 'kcuisui (make-cuisui cui sui) :lrlname 'srl)
(make-instance 'uso :sab sab :code code :srl srl :tty tty)))
(defun find-ucxt-cuisui (cui sui &key (srl *current-srl*))
- (with-umlisp-query ('mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela cx) srl 'kcuisui
+ (with-umlisp-query ('mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc) srl 'kcuisui
(make-cuisui cui sui) :lrlname 'ksrl)
(make-instance 'ucxt :sab sab :code code
:cxn (ensure-integer cxn)
(defun find-usty-all ()
"Return list of usty's for all semantic types"
- (with-umlisp-query ('mrsty '(tui) nil nil nil :distinct t)
+ (with-umlisp-query ('mrsty (tui) nil nil nil :distinct t)
(find-usty-tui tui)))
(defun find-usab-all ()
(defun find-ucon-tui (tui &key (srl *current-srl*))
"Find list of ucon for tui"
- (with-umlisp-query ('mrsty (cui) srl 'tui (parse-tui tui) :lrlname 'klrl :order '((cui asc)))
+ (with-umlisp-query ('mrsty (cui) srl 'tui (parse-tui tui) :lrlname 'klrl
+ :order '(cui asc))
(find-ucon-cui (ensure-integer cui) :srl srl)))
(defun find-ucon-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word. Optionally, use SQL's LIKE syntax"
(with-umlisp-query ('mrxw_eng (cui) srl 'wd word :like like :distinct t
- :lrlname 'klrl :order '((cui asc)))
+ :lrlname 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word, optionally use SQL's LIKE syntax"
(with-umlisp-query ('mrxnw_eng (cui) srl 'nwd word :like like :distinct t
- :lrlname 'klrl :order '((cui asc)))
+ :lrlname 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ustr-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
(with-umlisp-query ('mrxw_eng (cui sui) srl 'wd word
:lrlname 'klrl
- :order '((cui asc) (sui asc)))
+ :order '(cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
(defun find-ustr-normalized-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
(with-umlisp-query ('mrxnw_eng (cui sui) srl 'nwd word :lrlname 'klrl
- :order '((cui asc) (sui asc)))
+ :order '(cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
;; Special tables
(defun find-usrl-all ()
- (with-umlisp-query ('usrl (sab srl) nil nil nil :order '((sab asc))
- (make-instance 'usrl :sab sab :srl (ensure-integer srl)) usrls))
+ (with-umlisp-query ('usrl (sab srl) nil nil nil :order '(sab asc))
+ (make-instance 'usrl :sab sab :srl (ensure-integer srl))))
;;; Multiword lookup and score functions
(defun find-lmod-eui (eui)
(with-umlisp-query ('lrmod (bas sca psn_mod fea) nil 'eui eui)
- (make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psnmod :fea fea)))
+ (make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psn_mod :fea fea)))
(defun find-lnom-eui (eui)
(with-umlisp-query ('lrnom (bas sca eui2 bas2 sca2) nil 'eui eui)
(defun find-sdef-ui (ui)
(with-umlisp-query ('srdef (rt sty_rl stn_rtn def ex un rh abr rin)
nil 'ui ui :single t)
- (make-instance 'sdef :rt rt :ui ui :styrl styrl :stnrtn stnrtn
+ (make-instance 'sdef :rt rt :ui ui :styrl sty_rl :stnrtn stn_rtn
:def def :ex ex :un un :rh rh :abr abr :rin rin)))
(defun find-sstre1-ui (ui)
(defun find-sstr-rl (rl)
(with-umlisp-query ('srstre (sty_rl sty_rl2 ls) nil 'rl rl)
- (make-instance 'sstr :rl rl :styrl styrl :styrl2 styrl2 :ls ls)))
+ (make-instance 'sstr :rl rl :styrl sty_rl :styrl2 sty_rl2 :ls ls)))
(defun find-sstre2-sty (sty)
(with-umlisp-query ('srstre2 (rl sty2) nil 'sty sty)
(defun find-sstr-styrl (styrl)
(with-umlisp-query ('srstr (rl sty_rl2 ls) nil 'styrl styrl)
- (make-instance 'sstr :styrl styrl :rl rl :styrl2 styrl2 :ls ls)))
+ (make-instance 'sstr :styrl styrl :rl rl :styrl2 sty_rl2 :ls ls)))