;;;; Author: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: sql-classes.lisp,v 1.77 2003/05/15 01:13:48 kevin Exp $
+;;;; $Id: sql-classes.lisp,v 1.89 2003/07/21 09:46:22 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2003 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
;;;; *************************************************************************
-(in-package :umlisp)
-(declaim (optimize (compilation-speed 0) (debug 3)))
+(in-package #:umlisp)
(defvar *current-srl* nil)
,@(when %%where
`((typecase ,where-value
(fixnum
- (prefixed-fixnum-string ,where-value #\= 9))
+ (prefixed-fixnum-string ,where-value #\= 10))
(number
(concatenate 'string "=" (write-to-string ,where-value)))
(null
(defmacro umlisp-query (table fields srl where-name where-value
- &key (lrl "KCUILRL") single distinct order like)
+ &key (lrl "KCUILRL") single distinct order like
+ (query-cmd 'mutex-sql-query))
"Query the UMLisp database. Return a list of umlisp objects whose name
is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
- `(mutex-sql-query
+ `(,query-cmd
(query-string ,table ,fields ,srl ,where-name ,where-value
:lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
:lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
;; only WHERE-VALUE and SRL are evaluated
-(defmacro with-umlisp-query ((table fields srl where-name where-value
+(defmacro collect-umlisp-query ((table fields srl where-name where-value
&key (lrl "KCUILRL") distinct single
- order like)
- &body body)
+ order like (query-cmd 'mutex-sql-query))
+ &body body)
(let ((value (gensym))
(r (gensym)))
(if single
(tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value
:lrl ,lrl :single ,single
:distinct ,distinct :order ,order
- :like ,like))))
+ :like ,like
+ :query-cmd ,query-cmd))))
,@(unless where-name `((declare (ignore ,value))))
(when tuple
(destructuring-bind ,fields tuple
:order ,order :like ,like)
collect (destructuring-bind ,fields tuple ,@body))))))
-(defmacro with-umlisp-query-eval ((table fields srl where-name where-value
+(defmacro collect-umlisp-query-eval ((table fields srl where-name where-value
&key (lrl "KCUILRL") distinct single
order like)
&body body)
(defun find-ucon-cui (cui &key (srl *current-srl*))
"Find ucon for a cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrcon (kpfstr kcuilrl) srl cui cui :single t)
+ (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl cui cui :single t)
(make-instance 'ucon :cui cui :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*))
"Find ucon for a cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrcon (kcuilrl) srl cui cui :single t)
+ (collect-umlisp-query (mrcon (kcuilrl) srl cui cui :single t)
(make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl)
:pfstr nil)))
(defun find-pfstr-cui (cui &key (srl *current-srl*))
"Find preferred string for a cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrcon (kpfstr) srl cui cui :single t)
+ (collect-umlisp-query (mrcon (kpfstr) srl cui cui :single t)
kpfstr))
(defun find-ucon-lui (lui &key (srl *current-srl*))
"Find list of ucon for lui"
(ensure-lui-integer lui)
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui lui
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui lui
:distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-sui (sui &key (srl *current-srl*))
"Find list of ucon for sui"
(ensure-sui-integer sui)
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui sui :distinct t)
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui sui :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(ensure-cui-integer cui)
(ensure-sui-integer sui)
(when (and cui sui)
- (with-umlisp-query (mrcon (kpfstr kcuilrl) srl kcuisui
+ (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl kcuisui
(make-cuisui cui sui))
(make-instance 'ucon :cui cui
:pfstr kpfstr
(defun find-ucon-str (str &key (srl *current-srl*))
"Find ucon that are exact match for str"
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t)
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-all2 (&key (srl *current-srl*))
"Return list of all ucon's"
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
:distinct t)
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr kpfstr
(defun find-udef-cui (cui &key (srl *current-srl*))
"Return a list of udefs for cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrdef (sab def) srl cui cui :lrl "KSRL")
+ (collect-umlisp-query (mrdef (sab def) srl cui cui :lrl "KSRL")
(make-instance 'udef :sab sab :def def)))
(defun find-usty-cui (cui &key (srl *current-srl*))
"Return a list of usty for cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrsty (tui sty) srl cui cui :lrl "KLRL")
+ (collect-umlisp-query (mrsty (tui sty) srl cui cui :lrl "KLRL")
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-usty-word (word &key (srl *current-srl*))
"Return a list of usty that match word"
- (with-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t
+ (collect-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t
:distinct t)
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-urel-cui (cui &key (srl *current-srl*))
"Return a list of urel for cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1
+ (collect-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1
cui :lrl "KSRL")
(make-instance 'urel :cui1 cui :rel rel
:cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl
(defun find-urel-cui2 (cui2 &key (srl *current-srl*))
"Return a list of urel for cui2"
(ensure-cui-integer cui2)
- (with-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2
+ (collect-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2
cui2 :lrl "KSRL")
(make-instance 'urel :cui2 cui2 :rel rel
:cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl
(defun find-ucoc-cui (cui &key (srl *current-srl*))
"Return a list of ucoc for cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1
+ (collect-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1
cui :lrl klrl :order (cof asc))
(setq cui2 (ensure-integer cui2))
(when (zerop cui2) (setq cui2 nil))
(defun find-ucoc-cui2 (cui2 &key (srl *current-srl*))
"Return a list of ucoc for cui2"
(ensure-cui-integer cui2)
- (with-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2
+ (collect-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2
cui2 :lrl klrl :order (cof asc))
(when (zerop cui2) (setq cui2 nil))
(make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 cui2
(defun find-ulo-cui (cui &key (srl *current-srl*))
"Return a list of ulo for cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrlo (isn fr un sui sna soui) srl cui cui
+ (collect-umlisp-query (mrlo (isn fr un sui sna soui) srl cui cui
:lrl "KLRL")
(make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un
:sui (ensure-integer sui) :sna sna :soui soui)))
(defun find-uatx-cui (cui &key (srl *current-srl*))
"Return a list of uatx for cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mratx (sab rel atx) srl cui cui :lrl ksrl)
+ (collect-umlisp-query (mratx (sab rel atx) srl cui cui :lrl ksrl)
(make-instance 'uatx :sab sab :rel rel :atx atx)))
(defun find-uterm-cui (cui &key (srl *current-srl*))
"Return a list of uterm for cui"
(ensure-cui-integer cui)
- (with-umlisp-query (mrcon (lui lat ts kluilrl) srl cui cui
+ (collect-umlisp-query (mrcon (lui lat ts kluilrl) srl cui cui
:lrl kluilrl :distinct t)
(make-instance 'uterm :lui (ensure-integer lui) :cui cui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-lui (lui &key (srl *current-srl*))
"Return a list of uterm for lui"
(ensure-lui-integer lui)
- (with-umlisp-query (mrcon (cui lat ts kluilrl) srl lui lui
+ (collect-umlisp-query (mrcon (cui lat ts kluilrl) srl lui lui
:lrl kluilrl :distinct t)
(make-instance 'uterm :cui (ensure-integer cui) :lui lui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
"Return single uterm for cui/lui"
(ensure-cui-integer cui)
(ensure-lui-integer lui)
- (with-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui
+ (collect-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui
(make-cuilui cui lui)
:lrl kluilrl :single t)
(make-instance 'uterm :cui cui :lui lui :lat lat :ts ts
"Return a list of ustr for cui/lui"
(ensure-cui-integer cui)
(ensure-lui-integer lui)
- (with-umlisp-query (mrcon (sui stt str lrl) srl kcuilui
+ (collect-umlisp-query (mrcon (sui stt str lrl) srl kcuilui
(make-cuilui cui lui) :lrl lrl)
(make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui
:cuisui (make-cuisui cui sui) :stt stt :str str
"Return the single ustr for cuisui"
(ensure-cui-integer cui)
(ensure-sui-integer sui)
- (with-umlisp-query (mrcon (lui stt str lrl) srl kcuisui
+ (collect-umlisp-query (mrcon (lui stt str lrl) srl kcuisui
(make-cuisui cui sui) :lrl lrl :single t)
(make-instance 'ustr :sui sui :cui cui :cuisui (make-cuisui cui sui)
:lui (ensure-integer lui) :stt stt :str str
(defun find-ustr-sui (sui &key (srl *current-srl*))
"Return the list of ustr for sui"
(ensure-sui-integer sui)
- (with-umlisp-query (mrcon (cui lui stt str lrl) srl sui sui
+ (collect-umlisp-query (mrcon (cui lui stt str lrl) srl sui sui
:lrl lrl)
(make-instance 'ustr :sui sui :cui cui :stt stt :str str
:cuisui (make-cuisui (ensure-integer cui) sui)
(defun find-ustr-sab (sab &key (srl *current-srl*))
"Return the list of ustr for sab"
- (with-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl)
+ (collect-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl)
(let ((cuisui (ensure-integer kcuisui)))
(apply #'find-ustr-cuisui
(append
(defun find-string-sui (sui &key (srl *current-srl*))
"Return the string associated with sui"
(ensure-sui-integer sui)
- (with-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t)
+ (collect-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t)
str))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
(ensure-sui-integer sui)
(ensure-cui-integer cui)
- (with-umlisp-query (mrso (sab code srl tty) srl kcuisui
+ (collect-umlisp-query (mrso (sab code srl tty) srl kcuisui
(make-cuisui cui sui) :lrl srl)
(make-instance 'uso :sab sab :code code :srl srl :tty tty)))
(defun find-ucxt-cuisui (cui sui &key (srl *current-srl*))
(ensure-cui-integer cui)
(ensure-sui-integer sui)
- (with-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc)
+ (collect-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc)
srl kcuisui (make-cuisui cui sui) :lrl ksrl)
(make-instance 'ucxt :sab sab :code code
:cxn (ensure-integer cxn) :cxl cxl :cxs cxs :hcd hcd
(ensure-cui-integer cui)
(ensure-lui-integer lui)
(ensure-sui-integer sui)
- (let ((ls (format nil "select CODE,ATN,SAB,ATV from MRSAT where ")))
+ (let ((ls "select CODE,ATN,SAB,ATV from MRSAT where "))
(cond
- (sui (string-append ls (format nil "KCUISUI=~D" (make-cuisui cui sui))))
- (lui (string-append ls (format nil "KCUILUI=~D and sui=0"
- (make-cuilui cui lui))))
- (t (string-append ls (format nil "cui=~D and lui=0 and sui=0" cui))))
+ (sui (string-append ls "KCUISUI="
+ (integer-string (make-cuisui cui sui) 14)))
+ (lui (string-append ls "KCUILUI="
+ (integer-string (make-cuilui cui lui) 14)
+ " and sui=0"))
+ (t (string-append ls "cui=" (prefixed-fixnum-string cui nil 7)
+ " and lui=0 and sui=0")))
(when srl
- (string-append ls (format nil " and KSRL <= ~D" srl)))
+ (string-append ls " and KSRL<=" (prefixed-fixnum-string srl nil 3)))
(loop for tuple in (mutex-sql-query ls) collect
(destructuring-bind (code atn sab atv) tuple
(make-instance 'usat :code code :atn atn :sab sab :atv atv)))))
(defun find-usty-tui (tui)
"Find usty for tui"
(ensure-tui-integer tui)
- (with-umlisp-query (mrsty (sty) nil tui tui :single t)
+ (collect-umlisp-query (mrsty (sty) nil tui tui :single t)
(make-instance 'usty :tui tui :sty sty)))
(defun find-usty-sty (sty)
"Find usty for a sty"
- (with-umlisp-query (mrsty (tui) nil sty sty :single t)
+ (collect-umlisp-query (mrsty (tui) nil sty sty :single t)
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-usty-all ()
"Return list of usty's for all semantic types"
- (with-umlisp-query (mrsty (tui) nil nil nil :distinct t)
+ (collect-umlisp-query (mrsty (tui) nil nil nil :distinct t)
(find-usty-tui tui)))
(defun find-usab-all ()
"Find usab for a key"
- (with-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta
+ (collect-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta
rmeta slc scc srl tfr cfr cxty ttyl atnl lat
cenc curver sabin) nil nil nil)
(make-instance 'usab :vcui (ensure-integer vcui)
(defun find-usab-by-key (key-name key)
"Find usab for a key"
- (with-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver mstart
+ (collect-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver mstart
mend imeta rmeta slc scc srl tfr cfr cxty
ttyl atnl lat cenc curver sabin)
nil key-name key :single t)
(defun find-ucon-tui (tui &key (srl *current-srl*))
"Find list of ucon for tui"
(ensure-tui-integer tui)
- (with-umlisp-query (mrsty (cui) srl tui tui :lrl klrl :order (cui asc))
+ (collect-umlisp-query (mrsty (cui) srl tui tui :lrl klrl :order (cui asc))
(find-ucon-cui (ensure-integer cui) :srl srl)))
(defun find-ucon-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word. Optionally, use SQL's LIKE syntax"
- (with-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t
+ (collect-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t
:lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word, optionally use SQL's LIKE syntax"
- (with-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
+ (collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
:lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ustr-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
- (with-umlisp-query (mrxw_eng (cui sui) srl wd word :lrl klrl
+ (collect-umlisp-query (mrxw_eng (cui sui) srl wd word :lrl klrl
:order (cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
(defun find-ustr-normalized-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
- (with-umlisp-query (mrxnw_eng (cui sui) srl nwd word :lrl klrl
+ (collect-umlisp-query (mrxnw_eng (cui sui) srl nwd word :lrl klrl
:order (cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
+(defun find-uterm-word (word &key (srl *current-srl*))
+ "Return list of uterms that match word"
+ (collect-umlisp-query (mrxw_eng (cui lui) srl wd word :lrl klrl
+ :order (cui asc lui asc))
+ (find-uterm-cuilui (ensure-integer cui) (ensure-integer lui) :srl srl)))
+
+(defun find-uterm-normalized-word (word &key (srl *current-srl*))
+ "Return list of uterms that match word"
+ (collect-umlisp-query (mrxnw_eng (cui lui) srl nwd word :lrl klrl
+ :order (cui asc lui asc))
+ (find-uterm-cuilui (ensure-integer cui) (ensure-integer lui) :srl srl)))
+
(defun find-ucon-noneng-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match non-english word"
- (with-umlisp-query-eval ('mrxw_noneng '(cui) srl 'wd word :like like
+ (collect-umlisp-query-eval ('mrxw_noneng '(cui) srl 'wd word :like like
:distinct t :lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ustr-noneng-word (word &key (srl *current-srl*))
"Return list of ustrs that match non-english word"
- (with-umlisp-query (mrxw_noneng (cui sui) srl wd word :lrl klrl
+ (collect-umlisp-query (mrxw_noneng (cui sui) srl wd word :lrl klrl
:order (cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
;; Special tables
(defun find-usrl-all ()
- (with-umlisp-query (usrl (sab srl) nil nil nil :order (sab asc))
+ (collect-umlisp-query (usrl (sab srl) nil nil nil :order (sab asc))
(make-instance 'usrl :sab sab :srl (ensure-integer srl))))
;;; Multiword lookup and score functions
-(defun find-ucon-multiword (str &key (srl *current-srl*))
- "Return sorted list of ucon's that match a multiword string"
- (let* ((words (delimited-string-to-list str #\space))
- (ucons '()))
- (dolist (word words)
- (setq ucons (append ucons (find-ucon-word word :srl srl))))
- (sort-score-ucon-str str (delete-duplicates ucons :test #'eql :key #'cui))))
-
-(defun find-ustr-multiword (str &key (srl *current-srl*))
- "Return sorted list of ustr's that match a multiword string"
- (let* ((words (delimited-string-to-list str #\space))
- (ustrs '()))
- (dolist (word words)
- (setq ustrs (append ustrs (find-ustr-word word :srl srl))))
- (sort-score-ustr-str str (delete-duplicates ustrs :test #'eql :key #'cui))))
+(defun find-uobj-multiword (str obj-lookup-fun sort-fun key srl
+ only-exact-if-match)
+ (let ((uobjs '()))
+ (dolist (word (delimited-string-to-list str #\space))
+ (setq uobjs (append uobjs (funcall obj-lookup-fun word :srl srl))))
+ (let ((sorted
+ (funcall sort-fun str
+ (delete-duplicates uobjs :test #'= :key key))))
+ (if (and (plusp (length sorted))
+ only-exact-if-match
+ (multiword-match str (pfstr (first sorted))))
+ (first sorted)
+ sorted))))
+
+(defun find-ucon-multiword (str &key (srl *current-srl*)
+ (only-exact-if-match t))
+ (find-uobj-multiword str #'find-ucon-word #'sort-score-pfstr-str
+ #'cui srl only-exact-if-match))
+
+(defun find-uterm-multiword (str &key (srl *current-srl*)
+ (only-exact-if-match t))
+ (find-uobj-multiword str #'find-uterm-word #'sort-score-pfstr-str
+ #'lui srl only-exact-if-match))
+
+(defun find-ustr-multiword (str &key (srl *current-srl*)
+ (only-exact-if-match t))
+ (find-uobj-multiword str #'find-ustr-word #'sort-score-ustr-str
+ #'sui srl only-exact-if-match))
-(defun sort-score-ucon-str (str ucons)
+(defun sort-score-pfstr-str (str uobjs)
"Return list of sorted and scored ucons. Score by match of str to ucon-pfstr"
- (sort-score-umlsclass-str ucons str #'pfstr))
+ (sort-score-umlsclass-str uobjs str #'pfstr))
(defun sort-score-ustr-str (str ustrs)
"Return list of sorted and scored ucons. Score by match of str to ucon-pfstr"
scored))
(mapcar #'car (sort scored #'> :key #'cadr))))
-(defun score-multiword-match (s1 s2)
- "Score a match between two strings with s1 being reference string"
- (let* ((word-list-1 (delimited-string-to-list s1 #\space))
- (word-list-2 (delimited-string-to-list s2 #\space))
- (n1 (length word-list-1))
- (n2 (length word-list-2))
- (unmatched n1)
- (score 0)
- (nlong 0)
- (nshort 0)
- short-list long-list)
- (declare (fixnum n1 n2 nshort nlong score unmatched))
- (if (> n1 n2)
- (progn
- (setq nlong n1)
- (setq nshort n2)
- (setq long-list word-list-1)
- (setq short-list word-list-2))
- (progn
- (setq nlong n2)
- (setq nshort n1)
- (setq long-list word-list-2)
- (setq short-list word-list-1)))
- (decf score (- nlong nshort)) ;; reduce score for extra words
- (dotimes (iword nshort)
- (declare (fixnum iword))
- (kmrcl:aif (position (nth iword short-list) long-list :test #'string-equal)
- (progn
- (incf score (- 10 (abs (- kmrcl::it iword))))
- (decf unmatched))))
- (decf score (* 2 unmatched))
- score))
-
;;; LEX SQL functions
(defun find-lexterm-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrwd (wrd) nil eui eui :single t)
+ (collect-umlisp-query (lrwd (wrd) nil eui eui :single t)
(make-instance 'lexterm :eui eui :wrd wrd)))
(defun find-lexterm-word (wrd)
- (with-umlisp-query (lrwd (eui) nil wrd wrd)
+ (collect-umlisp-query (lrwd (eui) nil wrd wrd)
(make-instance 'lexterm :eui (ensure-integer eui)
:wrd (copy-seq wrd))))
(defun find-labr-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui)
+ (collect-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui)
(make-instance 'labr :eui eui :bas bas :abr abr :bas2 bas2
:eui2 (ensure-integer eui2))))
(defun find-labr-bas (bas)
- (with-umlisp-query (labr (eui abr eui2 bas2) nil bas bas)
+ (collect-umlisp-query (labr (eui abr eui2 bas2) nil bas bas)
(make-instance 'labr :eui (ensure-integer eui) :abr abr :bas2 bas2
:bas (copy-seq bas) :eui2 (ensure-integer eui2))))
(defun find-lagr-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lragr (str sca agr cit bas) nil eui eui)
+ (collect-umlisp-query (lragr (str sca agr cit bas) nil eui eui)
(make-instance 'lagr :eui eui :str str :sca sca :agr agr
:cit cit :bas bas)))
(defun find-lcmp-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrcmp (bas sca com) nil eui eui)
+ (collect-umlisp-query (lrcmp (bas sca com) nil eui eui)
(make-instance 'lcmp :eui eui :bas bas :sca sca :com com)))
(defun find-lmod-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui)
+ (collect-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui)
(make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psn_mod :fea fea)))
(defun find-lnom-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui)
+ (collect-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui)
(make-instance 'lnom :eui eui :bas bas :sca sca :bas2 bas2 :sca2 sca2
:eui2 (ensure-integer eui2))))
(defun find-lprn-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui)
+ (collect-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui)
(make-instance 'lprn :eui eui :bas bas :num num :gnd gnd
:cas cas :pos pos :qnt qnt :fea fea)))
(defun find-lprp-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrprp (bas str sca fea) nil eui eui)
+ (collect-umlisp-query (lrprp (bas str sca fea) nil eui eui)
(make-instance 'lprp :eui eui :bas bas :str str :sca sca :fea fea)))
(defun find-lspl-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrspl (spv bas) nil eui eui)
+ (collect-umlisp-query (lrspl (spv bas) nil eui eui)
(make-instance 'lspl :eui eui :spv spv :bas bas)))
(defun find-ltrm-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrtrm (bas gen) nil eui eui)
+ (collect-umlisp-query (lrtrm (bas gen) nil eui eui)
(make-instance 'ltrm :eui eui :bas bas :gen gen)))
(defun find-ltyp-eui (eui)
(ensure-eui-integer eui)
- (with-umlisp-query (lrtyp (bas sca typ) nil eui eui)
+ (collect-umlisp-query (lrtyp (bas sca typ) nil eui eui)
(make-instance 'ltyp :eui eui :bas bas :sca sca :typ typ)))
(defun find-lwd-wrd (wrd)
(make-instance 'lwd :wrd
- :euilist (with-umlisp-query (lrwd (eui) nil wrd wrd)
+ :euilist (collect-umlisp-query (lrwd (eui) nil wrd wrd)
(ensure-integer eui))))
;;; Semantic Network SQL access functions
(defun find-sdef-ui (ui)
- (with-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin)
+ (collect-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin)
nil ui ui :single t)
(make-instance 'sdef :rt rt :ui ui :styrl sty_rl :stnrtn stn_rtn
:def def :ex ex :un un :rh rh :abr abr :rin rin)))
(defun find-sstre1-ui (ui)
- (with-umlisp-query (srstre1 (ui2 ui3) nil ui ui)
+ (collect-umlisp-query (srstre1 (ui2 ui3) nil ui ui)
(make-instance 'sstre1 :ui ui :ui2 (ensure-integer ui2)
:ui3 (ensure-integer ui3))))
(defun find-sstre1-ui2 (ui2)
- (with-umlisp-query (srstre1 (ui ui3) nil ui2 ui2)
+ (collect-umlisp-query (srstre1 (ui ui3) nil ui2 ui2)
(make-instance 'sstre1 :ui (ensure-integer ui) :ui2 ui2
:ui3 (ensure-integer ui3))))
(defun find-sstr-rl (rl)
- (with-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl)
+ (collect-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl)
(make-instance 'sstr :rl rl :styrl sty_rl :styrl2 sty_rl2 :ls ls)))
(defun find-sstre2-sty (sty)
- (with-umlisp-query (srstre2 (rl sty2) nil sty sty)
+ (collect-umlisp-query (srstre2 (rl sty2) nil sty sty)
(make-instance 'sstre2 :sty (copy-seq sty) :rl rl :sty2 sty2)))
(defun find-sstr-styrl (styrl)
- (with-umlisp-query (srstr (rl sty_rl2 ls) nil styrl styrl)
+ (collect-umlisp-query (srstr (rl sty_rl2 ls) nil styrl styrl)
(make-instance 'sstr :styrl styrl :rl rl :styrl2 sty_rl2 :ls ls)))
+
+
+;;; **************************
+;;; Local Classes
+;;; **************************
+
+
+(defun make-ustats ()
+ (with-sql-connection (conn)
+ (sql-execute "drop table if exists USTATS" conn)
+ (sql-execute "create table USTATS (NAME varchar(160), COUNT bigint, SRL integer)" conn)
+
+ (dotimes (srl 4)
+ (insert-ustats-count conn "Concept Count" "MRCON" "distinct CUI" "KCUILRL" srl)
+ (insert-ustats-count conn "Term Count" "MRCON" "distinct KCUILUI" "KCUILRL" srl)
+ (insert-ustats-count conn "Distinct Term Count" "MRCON" "distinct LUI" "KLUILRL" srl)
+ (insert-ustats-count conn "String Count" "MRCON" "*" "LRL" srl)
+ (insert-ustats-count conn "Distinct String Count" "MRCON" "distinct SUI" "LRL" srl)
+ (insert-ustats-count conn "Associated Expression Count" "MRATX" "*" "KSRL" srl)
+ (insert-ustats-count conn "Context Count" "MRCXT" "*" "KSRL" srl)
+ (insert-ustats-count conn "Co-occuring Concept Count" "MRCOC" "*" "KLRL" srl)
+ (insert-ustats-count conn "Definition Count" "MRDEF" "*" "KSRL" srl)
+ (insert-ustats-count conn "Locator Count" "MRLO" "*" "KLRL" srl)
+ (insert-ustats-count conn "Rank Count" "MRRANK" "*" "KSRL" srl)
+ (insert-ustats-count conn "Relationship Count" "MRREL" "*" "KSRL" srl)
+ (insert-ustats-count conn "Semantic Type Count" "MRSTY" "*" "KLRL" srl)
+ (insert-ustats-count conn "Simple Attribute Count" "MRSAT" "*" "KSRL" srl)
+ (insert-ustats-count conn "Source Count" "MRSO" "*" "SRL" srl)
+ (insert-ustats-count conn "Word Index Count" "MRXW_ENG" "*" "KLRL" srl)
+ (insert-ustats-count conn "Normalized Word Index Count" "MRXNW_ENG" "*" "KLRL" srl)
+ (insert-ustats-count conn "Normalized String Index Count" "MRXNS_ENG" "*" "KLRL" srl)
+ (insert-ustats-count conn "Bonus Attribute Name Count" "BONUS_ATN" "*" nil srl)
+ (insert-ustats-count conn "Bonus Relationship Count" "BONUS_REL" "*" nil srl)
+ (insert-ustats-count conn "Bonus Source Abbreviation Count" "BONUS_SAB" "*" nil srl)
+ (insert-ustats-count conn "Bonus Term Type Count" "BONUS_TTY" "*" nil srl))
+ (sql-execute "create index USTATS_SRL on USTATS (SRL)" conn))
+ (find-ustats-all))
+
+(defun insert-ustats-count (conn name table count-variable srl-control srl)
+ (insert-ustats conn name (find-count-table conn table srl count-variable srl-control) srl))
+
+(defun find-count-table (conn table srl count-variable srl-control)
+ (cond
+ ((stringp srl-control)
+ (ensure-integer
+ (caar (sql-query (format nil "select count(~a) from ~a where ~a <= ~d"
+ count-variable table srl-control srl)
+ conn))))
+ ((null srl-control)
+ (ensure-integer
+ (caar (sql-query (format nil "select count(~a) from ~a"
+ count-variable table )
+ conn))))
+ (t
+ (error "Unknown srl-control")
+ 0)))
+
+(defun insert-ustats (conn name count srl)
+ (sql-execute (format nil "insert into USTATS (name,count,srl) values ('~a',~d,~d)"
+ name count (if srl srl 3))
+ conn))
+
+(defun find-ustats-all (&key (srl *current-srl*))
+ (collect-umlisp-query (ustats (name count srl) nil srl srl
+ :order (name asc))
+ (make-instance 'ustats :name name :hits (ensure-integer count)
+ :srl (ensure-integer srl))))
+
+(defun find-ustats-srl (srl)
+ (collect-umlisp-query (ustats (name count) nil srl srl :order (name asc))
+ (make-instance 'ustats :name name :hits (ensure-integer count))))
+
+
+
+(defun find-bsab-sab (sab)
+ (collect-umlisp-query (bonus_sab (name count) nil sab sab :single t)
+ (make-instance 'bsab :sab sab :name name :hits (ensure-integer count))))
+
+(defun find-bsab-all ()
+ (collect-umlisp-query (bonus_sab (sab name count) nil nil nil :order (sab asc))
+ (make-instance 'bsab :sab sab :name name :hits (ensure-integer count))))
+
+(defun find-btty-tty (tty)
+ (:collect-umlisp-query (bonus_tty (name count) nil tty tty :single t)
+ (make-instance 'btty :tty tty :name name :hits (ensure-integer count))))
+
+(defun find-btty-all ()
+ (u::collect-umlisp-query (bonus_tty (tty name count) nil nil nil :order (tty asc))
+ (make-instance 'btty :tty tty :name name :hits (ensure-integer count))))
+
+(defun find-brel-rel (rel)
+ (u::collect-umlisp-query (bonus_rel (sab sl rel rela count) nil rel rel)
+ (make-instance 'brel :sab sab :sl sl :rel rel :rela rela
+ :hits (ensure-integer count))))
+
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