;;;; Author: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: sql-classes.lisp,v 1.61 2003/05/04 01:18:10 kevin Exp $
+;;;; $Id: sql-classes.lisp,v 1.85 2003/06/10 22:57:45 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2003 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
;;;; *************************************************************************
-(in-package :umlisp)
-(declaim (optimize (compilation-speed 0) (debug 3)))
+(in-package #:umlisp)
(defvar *current-srl* nil)
(defun current-srl! (srl)
(setq *current-srl* srl))
-;; only WHERE-VALUE and SRL are evaluated
-(defmacro with-umlisp-query ((table fields srl where-name where-value
- &key (lrl "KCUILRL") distinct single
- order like)
- &body body)
- (let ((value (gensym)))
- (if single
- `(let ((,value ,where-value))
- (when ,value
- (let ((tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value
- :lrl ,lrl :single ,single
- :distinct ,distinct :order ,order
- :like ,like))))
- (when tuple
- (destructuring-bind ,fields tuple
- ,@body)))))
- `(let ((,value ,where-value))
- (when ,value
- (loop for tuple in
- (umlisp-query ,table ,fields ,srl ,where-name ,value
- :lrl ,lrl :single ,single :distinct ,distinct
- :order ,order :like ,like)
- collect (destructuring-bind ,fields tuple
- ,@body)))))))
-
-(defmacro with-umlisp-query-eval ((table fields srl where-name where-value
- &key (lrl "KCUILRL") distinct single
- order like)
- &body body)
- (let ((value (gensym))
- (eval-fields (cadr fields)))
- (if single
- `(let ((,value ,where-value))
- (when ,value
- (let ((tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
- :lrl ,lrl :single ,single
- :distinct ,distinct :order ,order
- :like ,like))))
- (when tuple
- (destructuring-bind ,eval-fields tuple
- ,@body)))))
- `(let ((,value ,where-value))
- (when ,value
- (loop for tuple in
- (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
- :lrl ,lrl :single ,single :distinct ,distinct
- :order ,order :like ,like)
- collect (destructuring-bind ,eval-fields tuple
- ,@body)))))))
-
-
-
-(defmacro umlisp-query (table fields srl where-name where-value
- &key (lrl "KCUILRL") single distinct order like)
- "Query the UMLisp database. Return a list of umlisp objects whose name
-is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
- `(mutex-sql-query
- (query-string ,table ,fields ,srl ,where-name ,where-value
- :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
-
-(defmacro umlisp-query-eval (table fields srl where-name where-value
- &key (lrl "KCUILRL") single distinct order like)
- "Query the UMLisp database. Return a list of umlisp objects whose name
-is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
- `(mutex-sql-query
- (query-string-eval ,table ,fields ,srl ,where-name ,where-value
- :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
-
-
(defmacro query-string (table fields &optional srl where-name where-value
&key (lrl "KCUILRL") single distinct order like)
(let* ((%%fields (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
(if distinct "distinct " "") fields table))
- (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) ""))
+ (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}"
+ order)
+ ""))
(%%lrl (format nil " and ~:@(~A~)<=" lrl))
(%%where (when where-name
(format nil " where ~:@(~A~)~A" where-name
- (if like " like " "=")))))
+ (if like " like " "")))))
`(concatenate
'string
,%%fields
,@(when %%where (list %%where))
,@(when %%where
- `((if (numberp ,where-value)
- (write-to-string ,where-value)
- (format nil ,(if like "'%~A%'" "'~A'") ,where-value))))
+ `((typecase ,where-value
+ (fixnum
+ (prefixed-fixnum-string ,where-value #\= 10))
+ (number
+ (concatenate 'string "=" (write-to-string ,where-value)))
+ (null
+ " is null")
+ (t
+ (format nil ,(if like "'%~A%'" "='~A'") ,where-value)))))
(if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "")
,@(when %%order (list %%order))
,@(when single (list " limit 1")))))
'string
(format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
(if distinct "distinct " "") fields table)
+ (if where-name (format nil " where ~:@(~A~)" where-name) "")
(if where-name
(format nil
- (if (stringp where-value)
- (if like
- " where ~A like '%~A%'"
- " where ~A='~A'")
- " where ~A=~A")
- where-name where-value)
+ (typecase where-value
+ (number "=~D")
+ (null " is null")
+ (t
+ (if like " like '%~A%""='~A'")))
+ where-value)
"")
- (if srl (format nil " and ~:@(~A~) <= ~D" lrl srl) "")
+ (if srl (format nil " and ~:@(~A~)<=~D" lrl srl) "")
(if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) "")
(if single " limit 1" "")))
+
+(defmacro umlisp-query (table fields srl where-name where-value
+ &key (lrl "KCUILRL") single distinct order like)
+ "Query the UMLisp database. Return a list of umlisp objects whose name
+is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
+ `(mutex-sql-query
+ (query-string ,table ,fields ,srl ,where-name ,where-value
+ :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
+
+(defmacro umlisp-query-eval (table fields srl where-name where-value
+ &key (lrl "KCUILRL") single distinct order like)
+ "Query the UMLisp database. Return a list of umlisp objects whose name
+is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
+ `(mutex-sql-query
+ (query-string-eval ,table ,fields ,srl ,where-name ,where-value
+ :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
+
+;; only WHERE-VALUE and SRL are evaluated
+(defmacro collect-umlisp-query ((table fields srl where-name where-value
+ &key (lrl "KCUILRL") distinct single
+ order like)
+ &body body)
+ (let ((value (gensym))
+ (r (gensym)))
+ (if single
+ `(let* ((,value ,where-value)
+ (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single
+ :distinct ,distinct :order ,order
+ :like ,like))))
+ ,@(unless where-name `((declare (ignore ,value))))
+ (when tuple
+ (destructuring-bind ,fields tuple
+ ,@body)))
+ `(let ((,value ,where-value))
+ ,@(unless where-name `((declare (ignore ,value))))
+ (let ((,r '()))
+ (dolist (tuple (umlisp-query ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like))
+ (push (destructuring-bind ,fields tuple ,@body) ,r))
+ (nreverse ,r))
+ #+ignore
+ (loop for tuple in
+ (umlisp-query ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like)
+ collect (destructuring-bind ,fields tuple ,@body))))))
+
+(defmacro collect-umlisp-query-eval ((table fields srl where-name where-value
+ &key (lrl "KCUILRL") distinct single
+ order like)
+ &body body)
+ (let ((value (gensym))
+ (r (gensym))
+ (eval-fields (cadr fields)))
+ (if single
+ `(let* ((,value ,where-value)
+ (tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single
+ :distinct ,distinct :order ,order
+ :like ,like))))
+ (when tuple
+ (destructuring-bind ,eval-fields tuple
+ ,@body)))
+ `(let ((,value ,where-value)
+ (,r '()))
+ (dolist (tuple (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like))
+ (push (destructuring-bind ,eval-fields tuple ,@body) ,r))
+ (nreverse ,r)
+ #+ignore
+ (loop for tuple in
+ (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like)
+ collect (destructuring-bind ,eval-fields tuple ,@body))))))
+
+;;;
+;;; Read from SQL database
+
+(defmacro ensure-cui-integer (cui)
+ `(if (stringp ,cui)
+ (setq ,cui (parse-cui ,cui))
+ ,cui))
+
+(defmacro ensure-lui-integer (lui)
+ `(if (stringp ,lui)
+ (setq ,lui (parse-lui ,lui))
+ ,lui))
+
+(defmacro ensure-sui-integer (sui)
+ `(if (stringp ,sui)
+ (setq ,sui (parse-sui ,sui))
+ ,sui))
+
+(defmacro ensure-tui-integer (tui)
+ `(if (stringp ,tui)
+ (setq ,tui (parse-tui ,tui))
+ ,tui))
+
+(defmacro ensure-eui-integer (eui)
+ `(if (stringp ,eui)
+ (setq ,eui (parse-eui ,eui))
+ ,eui))
+
(defun find-ucon-cui (cui &key (srl *current-srl*))
"Find ucon for a cui"
- (with-umlisp-query (mrcon (kpfstr kcuilrl) srl cui (parse-cui cui) :single t)
- (make-instance 'ucon :cui (parse-cui cui)
- :pfstr kpfstr
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl cui cui :single t)
+ (make-instance 'ucon :cui cui :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
-(defun find-ucon-cui-old (cui &key (srl *current-srl*))
- "Find ucon for a cui"
- (when (stringp cui) (setq cui (parse-cui cui)))
- (when cui
- (let ((ls (format nil "select KPFSTR,KCUILRL from MRCON where CUI=~d" cui)))
- (when srl
- (string-append ls (format nil " and KCUILRL <= ~d" srl)))
- (string-append ls " limit 1")
- (let ((tuple (car (mutex-sql-query ls))))
- (destructuring-bind (kpfstr kcuilrl) tuple
- (make-instance 'ucon :cui cui :pfstr kpfstr
- :lrl (ensure-integer kcuilrl)))))))
-
(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*))
"Find ucon for a cui"
- (with-umlisp-query (mrcon (kcuilrl) srl cui (parse-cui cui) :single t)
- (make-instance 'ucon :cui (parse-cui cui)
- :lrl (ensure-integer kcuilrl)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrcon (kcuilrl) srl cui cui :single t)
+ (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl)
:pfstr nil)))
(defun find-pfstr-cui (cui &key (srl *current-srl*))
"Find preferred string for a cui"
- (with-umlisp-query (mrcon (kpfstr) srl cui (parse-cui cui) :single t)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrcon (kpfstr) srl cui cui :single t)
kpfstr))
(defun find-ucon-lui (lui &key (srl *current-srl*))
"Find list of ucon for lui"
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui (parse-lui lui) :distinct t)
- (make-instance 'ucon :cui (ensure-integer cui)
- :pfstr kpfstr
+ (ensure-lui-integer lui)
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui lui
+ :distinct t)
+ (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-sui (sui &key (srl *current-srl*))
"Find list of ucon for sui"
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui (parse-sui sui) :distinct t)
- (make-instance 'ucon :cui (ensure-integer cui)
- :pfstr kpfstr
+ (ensure-sui-integer sui)
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui sui :distinct t)
+ (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-cuisui (cui sui &key (srl *current-srl*))
"Find ucon for cui/sui"
+ (ensure-cui-integer cui)
+ (ensure-sui-integer sui)
(when (and cui sui)
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl kcuisui
- (make-cuisui (parse-cui cui) (parse-sui sui)))
- (make-instance 'ucon :cui (ensure-integer cui)
+ (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl kcuisui
+ (make-cuisui cui sui))
+ (make-instance 'ucon :cui cui
:pfstr kpfstr
:lrl (ensure-integer kcuilrl)))))
(defun find-ucon-str (str &key (srl *current-srl*))
"Find ucon that are exact match for str"
- (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t)
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
:order (cui asc) :distinct t)
:database db)))
+(defun find-ucon-all2 (&key (srl *current-srl*))
+ "Return list of all ucon's"
+ (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
+ :distinct t)
+ (make-instance 'ucon :cui (ensure-integer cui)
+ :pfstr kpfstr
+ :lrl (ensure-integer kcuilrl))))
+
(defun map-ucon-all (fn &key (srl *current-srl*))
"Map a function over all ucon's"
(with-sql-connection (db)
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr pfstr
:lrl (ensure-integer cuilrl))))
- (query-string mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc) :distinct t)
+ (query-string mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
+ :distinct t)
:database db)))
(defun find-udef-cui (cui &key (srl *current-srl*))
"Return a list of udefs for cui"
- (with-umlisp-query (mrdef (sab def) srl cui (parse-cui cui) :lrl "KSRL")
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrdef (sab def) srl cui cui :lrl "KSRL")
(make-instance 'udef :sab sab :def def)))
(defun find-usty-cui (cui &key (srl *current-srl*))
"Return a list of usty for cui"
- (with-umlisp-query (mrsty (tui sty) srl cui (parse-cui cui) :lrl "KLRL")
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrsty (tui sty) srl cui cui :lrl "KLRL")
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-usty-word (word &key (srl *current-srl*))
"Return a list of usty that match word"
- (with-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t :distinct t)
+ (collect-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t
+ :distinct t)
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-urel-cui (cui &key (srl *current-srl*))
"Return a list of urel for cui"
- (with-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1 (parse-cui cui) :lrl "KSRL")
- (make-instance 'urel :cui1 (parse-cui cui) :rel rel :cui2 (ensure-integer cui2) :rela rela
- :sab sab :sl sl :mg mg :pfstr2 kpfstr2)))
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1
+ cui :lrl "KSRL")
+ (make-instance 'urel :cui1 cui :rel rel
+ :cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl
+ :mg mg :pfstr2 kpfstr2)))
(defun find-urel-cui2 (cui2 &key (srl *current-srl*))
"Return a list of urel for cui2"
- (with-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2 (parse-cui cui2) :lrl "KSRL")
- (make-instance 'urel :cui2 (parse-cui cui2) :rel rel :cui1 (ensure-integer cui1) :rela rela
- :sab sab :sl sl :mg mg :pfstr2 kpfstr2)))
+ (ensure-cui-integer cui2)
+ (collect-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2
+ cui2 :lrl "KSRL")
+ (make-instance 'urel :cui2 cui2 :rel rel
+ :cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl
+ :mg mg :pfstr2 kpfstr2)))
(defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*))
- (mapcar
- #'(lambda (cui) (find-ucon-cui cui :srl srl))
- (remove-duplicates (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl)))))
+ (ensure-cui-integer cui2)
+ (loop for cui in (remove-duplicates
+ (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl)))
+ collect (find-ucon-cui cui :srl srl)))
(defun find-ucoc-cui (cui &key (srl *current-srl*))
"Return a list of ucoc for cui"
- (with-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1 (parse-cui cui)
- :lrl "KSRL" :order (cof asc))
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1
+ cui :lrl klrl :order (cof asc))
(setq cui2 (ensure-integer cui2))
(when (zerop cui2) (setq cui2 nil))
- (make-instance 'ucoc :cui1 (parse-cui cui) :cui2 (ensure-integer cui2) :soc soc :cot cot
- :cof (ensure-integer cof) :coa coa :pfstr2 kpfstr2)))
+ (make-instance 'ucoc :cui1 cui :cui2 (ensure-integer cui2)
+ :soc soc :cot cot :cof (ensure-integer cof) :coa coa
+ :pfstr2 kpfstr2)))
(defun find-ucoc-cui2 (cui2 &key (srl *current-srl*))
"Return a list of ucoc for cui2"
- (with-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2 (parse-cui cui2)
- :lrl "KSRL" :order (cof asc))
- (setq cui2 (ensure-integer cui2))
+ (ensure-cui-integer cui2)
+ (collect-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2
+ cui2 :lrl klrl :order (cof asc))
(when (zerop cui2) (setq cui2 nil))
- (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 (parse-cui cui2) :soc soc :cot cot
- :cof (ensure-integer cof) :coa coa :pfstr2 kpfstr2)))
+ (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 cui2
+ :soc soc :cot cot :cof (ensure-integer cof) :coa coa
+ :pfstr2 kpfstr2)))
(defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*))
"List of ucon with co-occurance cui2"
+ (ensure-cui-integer cui2)
(mapcar
#'(lambda (cui) (find-ucon-cui cui :srl srl))
(remove-duplicates (mapcar #'cui1 (find-ucoc-cui2 cui2 :srl srl)))))
(defun find-ulo-cui (cui &key (srl *current-srl*))
"Return a list of ulo for cui"
- (with-umlisp-query (mrlo (isn fr un sui sna soui) srl cui (parse-cui cui) :lrl "KLRL")
- (make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un :sui (ensure-integer sui) :sna sna
- :soui soui)))
-
-(defgeneric suistr (lo))
-(defmethod suistr ((lo ulo))
- "Return the string for a ulo object"
- (find-string-sui (sui lo)))
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrlo (isn fr un sui sna soui) srl cui cui
+ :lrl "KLRL")
+ (make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un
+ :sui (ensure-integer sui) :sna sna :soui soui)))
(defun find-uatx-cui (cui &key (srl *current-srl*))
"Return a list of uatx for cui"
- (with-umlisp-query (mratx (sab rel atx) srl cui (parse-cui cui) :lrl ksrl)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mratx (sab rel atx) srl cui cui :lrl ksrl)
(make-instance 'uatx :sab sab :rel rel :atx atx)))
(defun find-uterm-cui (cui &key (srl *current-srl*))
"Return a list of uterm for cui"
- (with-umlisp-query (mrcon (lui lat ts kluilrl) srl cui (parse-cui cui) :lrl kluilrl
- :distinct t)
- (make-instance 'uterm :lui (ensure-integer lui) :cui (parse-cui cui)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrcon (lui lat ts kluilrl) srl cui cui
+ :lrl kluilrl :distinct t)
+ (make-instance 'uterm :lui (ensure-integer lui) :cui cui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-lui (lui &key (srl *current-srl*))
"Return a list of uterm for lui"
- (with-umlisp-query (mrcon (cui lat ts kluilrl) srl lui (parse-lui lui)
+ (ensure-lui-integer lui)
+ (collect-umlisp-query (mrcon (cui lat ts kluilrl) srl lui lui
:lrl kluilrl :distinct t)
- (make-instance 'uterm :cui (ensure-integer cui) :lui (parse-lui lui)
+ (make-instance 'uterm :cui (ensure-integer cui) :lui lui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-cuilui (cui lui &key (srl *current-srl*))
"Return single uterm for cui/lui"
- (with-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui
- (make-cuilui (parse-cui cui) (parse-lui lui))
+ (ensure-cui-integer cui)
+ (ensure-lui-integer lui)
+ (collect-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui
+ (make-cuilui cui lui)
:lrl kluilrl :single t)
- (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts :lrl (ensure-integer kluilrl))))
+ (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts
+ :lrl (ensure-integer kluilrl))))
(defun find-ustr-cuilui (cui lui &key (srl *current-srl*))
"Return a list of ustr for cui/lui"
- (with-umlisp-query (mrcon (sui stt str lrl) srl kcuilui (make-cuilui cui lui) :lrl lrl)
+ (ensure-cui-integer cui)
+ (ensure-lui-integer lui)
+ (collect-umlisp-query (mrcon (sui stt str lrl) srl kcuilui
+ (make-cuilui cui lui) :lrl lrl)
(make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui
:cuisui (make-cuisui cui sui) :stt stt :str str
:lrl (ensure-integer lrl))))
(defun find-ustr-cuisui (cui sui &key (srl *current-srl*))
"Return the single ustr for cuisui"
- (with-umlisp-query (mrcon (lui stt str lrl) srl kcuisui (make-cuisui cui sui) :lrl lrl :single t)
+ (ensure-cui-integer cui)
+ (ensure-sui-integer sui)
+ (collect-umlisp-query (mrcon (lui stt str lrl) srl kcuisui
+ (make-cuisui cui sui) :lrl lrl :single t)
(make-instance 'ustr :sui sui :cui cui :cuisui (make-cuisui cui sui)
- :lui (ensure-integer lui) :stt stt :str str :lrl (ensure-integer lrl))))
+ :lui (ensure-integer lui) :stt stt :str str
+ :lrl (ensure-integer lrl))))
(defun find-ustr-sui (sui &key (srl *current-srl*))
"Return the list of ustr for sui"
- (with-umlisp-query (mrcon (cui lui stt str lrl) srl sui (parse-sui sui) :lrl lrl)
+ (ensure-sui-integer sui)
+ (collect-umlisp-query (mrcon (cui lui stt str lrl) srl sui sui
+ :lrl lrl)
(make-instance 'ustr :sui sui :cui cui :stt stt :str str
- :cuisui (make-cuisui (ensure-integer cui) (parse-sui sui))
- :lui (ensure-integer lui)
- :lrl (ensure-integer lrl))))
+ :cuisui (make-cuisui (ensure-integer cui) sui)
+ :lui (ensure-integer lui) :lrl (ensure-integer lrl))))
(defun find-ustr-sab (sab &key (srl *current-srl*))
"Return the list of ustr for sab"
- (with-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl)
+ (collect-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl)
(let ((cuisui (ensure-integer kcuisui)))
(apply #'find-ustr-cuisui
(append
- (multiple-value-list (decompose-cuisui cuisui)) (list :srl srl))))))
+ (multiple-value-list (decompose-cuisui cuisui))
+ (list :srl srl))))))
(defun find-ustr-all (&key (srl *current-srl*))
"Return list of all ustr's"
(clsql:map-query
'list
#'(lambda (cui lui sui stt lrl pfstr)
- (setq cui (ensure-integer cui))
- (setq lui (ensure-integer lui))
- (setq sui (ensure-integer sui))
- (setq lrl (ensure-integer lrl))
- (make-instance 'ustr :cui cui
- :lui lui
- :sui sui
- :cuisui (make-cuisui cui sui)
- :stt stt
- :lrl lrl
- :str pfstr))
- (query-string mrcon (cui lui sui stt lrl kpfstr) srl nil nil :lrl lrl :distinct t
+ (make-instance 'ustr :cui (ensure-integer cui)
+ :lui (ensure-integer lui) :sui (ensure-integer sui)
+ :stt stt :str pfstr
+ :cuisui (make-cuisui (ensure-integer cui)
+ (ensure-integer sui))
+ :lrl (ensure-integer lrl)))
+ (query-string mrcon (cui lui sui stt lrl kpfstr) srl nil nil :lrl lrl
+ :distinct t
:order (sui asc))
:database db)))
(defun find-string-sui (sui &key (srl *current-srl*))
"Return the string associated with sui"
- (with-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t)
+ (ensure-sui-integer sui)
+ (collect-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t)
str))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
- (with-umlisp-query (mrso (sab code srl tty) srl kcuisui (make-cuisui cui sui) :lrl srl)
+ (ensure-sui-integer sui)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrso (sab code srl tty) srl kcuisui
+ (make-cuisui cui sui) :lrl srl)
(make-instance 'uso :sab sab :code code :srl srl :tty tty)))
(defun find-ucxt-cuisui (cui sui &key (srl *current-srl*))
- (with-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc) srl kcuisui
- (make-cuisui cui sui) :lrl ksrl)
+ (ensure-cui-integer cui)
+ (ensure-sui-integer sui)
+ (collect-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc)
+ srl kcuisui (make-cuisui cui sui) :lrl ksrl)
(make-instance 'ucxt :sab sab :code code
- :cxn (ensure-integer cxn)
- :cxl cxl :cxs cxs :hcd hcd :rela rela :xc xc
- :rnk (ensure-integer rnk)
+ :cxn (ensure-integer cxn) :cxl cxl :cxs cxs :hcd hcd
+ :rela rela :xc xc :rnk (ensure-integer rnk)
:cui2 (ensure-integer cui2))))
(defun find-usat-ui (cui &optional (lui nil) (sui nil) &key (srl *current-srl*))
- (let ((ls (format nil "select CODE,ATN,SAB,ATV from MRSAT where ")))
+ (ensure-cui-integer cui)
+ (ensure-lui-integer lui)
+ (ensure-sui-integer sui)
+ (let ((ls "select CODE,ATN,SAB,ATV from MRSAT where "))
(cond
- (sui (string-append ls (format nil "KCUISUI=~d" (make-cuisui cui sui))))
- (lui (string-append ls (format nil "KCUILUI=~d and sui=0" (make-cuilui cui lui))))
- (t (string-append ls (format nil "cui=~d and lui=0 and sui=0" cui))))
+ (sui (string-append ls "KCUISUI="
+ (integer-string (make-cuisui cui sui) 14)))
+ (lui (string-append ls "KCUILUI="
+ (integer-string (make-cuilui cui lui) 14)
+ " and sui=0"))
+ (t (string-append ls "cui=" (prefixed-fixnum-string cui nil 7)
+ " and lui=0 and sui=0")))
(when srl
- (string-append ls (format nil " and KSRL <= ~d" srl)))
+ (string-append ls " and KSRL<=" (prefixed-fixnum-string srl nil 3)))
(loop for tuple in (mutex-sql-query ls) collect
(destructuring-bind (code atn sab atv) tuple
(make-instance 'usat :code code :atn atn :sab sab :atv atv)))))
(defun find-usty-tui (tui)
"Find usty for tui"
- (with-umlisp-query (mrsty (sty) nil tui (parse-tui tui) :single t)
- (make-instance 'usty :tui (parse-tui tui) :sty sty)))
+ (ensure-tui-integer tui)
+ (collect-umlisp-query (mrsty (sty) nil tui tui :single t)
+ (make-instance 'usty :tui tui :sty sty)))
(defun find-usty-sty (sty)
"Find usty for a sty"
- (with-umlisp-query (mrsty (tui) nil sty sty :single t)
+ (collect-umlisp-query (mrsty (tui) nil sty sty :single t)
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-usty-all ()
"Return list of usty's for all semantic types"
- (with-umlisp-query (mrsty (tui) nil nil nil :distinct t)
+ (collect-umlisp-query (mrsty (tui) nil nil nil :distinct t)
(find-usty-tui tui)))
(defun find-usab-all ()
"Find usab for a key"
- (with-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) nil nil nil)
+ (collect-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta
+ rmeta slc scc srl tfr cfr cxty ttyl atnl lat
+ cenc curver sabin) nil nil nil)
(make-instance 'usab :vcui (ensure-integer vcui)
- :rcui (ensure-integer rcui)
- :vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart
- :mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc
- :srl (ensure-integer srl)
+ :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
+ :sf sf :sver sver :mstart mstart :mend mend :imeta imeta
+ :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
:tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
:cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
:curver curver :sabin sabin)))
(defun find-usab-by-key (key-name key)
"Find usab for a key"
- (with-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) nil key-name key :single t)
+ (collect-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver mstart
+ mend imeta rmeta slc scc srl tfr cfr cxty
+ ttyl atnl lat cenc curver sabin)
+ nil key-name key :single t)
(make-instance 'usab :vcui (ensure-integer vcui)
- :rcui (ensure-integer rcui)
- :vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart
- :mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc
- :srl (ensure-integer srl)
+ :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
+ :sf sf :sver sver :mstart mstart :mend mend :imeta imeta
+ :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
:tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
:cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
:curver curver :sabin sabin)))
(defun find-ucon-tui (tui &key (srl *current-srl*))
"Find list of ucon for tui"
- (with-umlisp-query (mrsty (cui) srl tui (parse-tui tui) :lrl klrl
- :order (cui asc))
+ (ensure-tui-integer tui)
+ (collect-umlisp-query (mrsty (cui) srl tui tui :lrl klrl :order (cui asc))
(find-ucon-cui (ensure-integer cui) :srl srl)))
(defun find-ucon-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word. Optionally, use SQL's LIKE syntax"
- (with-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t
- :lrl klrl :order '(cui asc))
+ (collect-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t
+ :lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word, optionally use SQL's LIKE syntax"
- (with-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
- :lrl klrl :order '(cui asc))
+ (collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
+ :lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ustr-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
- (with-umlisp-query (mrxw_eng (cui sui) srl wd word
- :lrl klrl
- :order (cui asc sui asc))
+ (collect-umlisp-query (mrxw_eng (cui sui) srl wd word :lrl klrl
+ :order (cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
(defun find-ustr-normalized-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
- (with-umlisp-query (mrxnw_eng (cui sui) srl nwd word :lrl klrl
+ (collect-umlisp-query (mrxnw_eng (cui sui) srl nwd word :lrl klrl
:order (cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
+(defun find-ucon-noneng-word (word &key (srl *current-srl*) (like nil))
+ "Return list of ucons that match non-english word"
+ (collect-umlisp-query-eval ('mrxw_noneng '(cui) srl 'wd word :like like
+ :distinct t :lrl 'klrl :order '(cui asc))
+ (find-ucon-cui cui :srl srl)))
+
+(defun find-ustr-noneng-word (word &key (srl *current-srl*))
+ "Return list of ustrs that match non-english word"
+ (collect-umlisp-query (mrxw_noneng (cui sui) srl wd word :lrl klrl
+ :order (cui asc sui asc))
+ (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
+
;; Special tables
(defun find-usrl-all ()
- (with-umlisp-query (usrl (sab srl) nil nil nil :order (sab asc))
+ (collect-umlisp-query (usrl (sab srl) nil nil nil :order (sab asc))
(make-instance 'usrl :sab sab :srl (ensure-integer srl))))
;;; Multiword lookup and score functions
"Sort a list of objects based on scoring to a string"
(let ((scored '()))
(dolist (obj objs)
- (push
- (list obj
- (score-multiword-match str (funcall lookup-func obj)))
+ (push (list obj (score-multiword-match str (funcall lookup-func obj)))
scored))
(mapcar #'car (sort scored #'> :key #'cadr))))
;;; LEX SQL functions
(defun find-lexterm-eui (eui)
- (with-umlisp-query (lrwd (wrd) nil eui eui :single t)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrwd (wrd) nil eui eui :single t)
(make-instance 'lexterm :eui eui :wrd wrd)))
(defun find-lexterm-word (wrd)
- (with-umlisp-query (lrwd (eui) nil wrd wrd)
+ (collect-umlisp-query (lrwd (eui) nil wrd wrd)
(make-instance 'lexterm :eui (ensure-integer eui)
:wrd (copy-seq wrd))))
;; LEX SQL Read functions
(defun find-labr-eui (eui)
- (with-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui)
(make-instance 'labr :eui eui :bas bas :abr abr :bas2 bas2
:eui2 (ensure-integer eui2))))
(defun find-labr-bas (bas)
- (with-umlisp-query (labr (eui abr eui2 bas2) nil bas bas)
+ (collect-umlisp-query (labr (eui abr eui2 bas2) nil bas bas)
(make-instance 'labr :eui (ensure-integer eui) :abr abr :bas2 bas2
:bas (copy-seq bas) :eui2 (ensure-integer eui2))))
(defun find-lagr-eui (eui)
- (with-umlisp-query (lragr (str sca agr cit bas) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lragr (str sca agr cit bas) nil eui eui)
(make-instance 'lagr :eui eui :str str :sca sca :agr agr
:cit cit :bas bas)))
(defun find-lcmp-eui (eui)
- (with-umlisp-query (lrcmp (bas sca com) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrcmp (bas sca com) nil eui eui)
(make-instance 'lcmp :eui eui :bas bas :sca sca :com com)))
(defun find-lmod-eui (eui)
- (with-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui)
(make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psn_mod :fea fea)))
(defun find-lnom-eui (eui)
- (with-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui)
(make-instance 'lnom :eui eui :bas bas :sca sca :bas2 bas2 :sca2 sca2
:eui2 (ensure-integer eui2))))
(defun find-lprn-eui (eui)
- (with-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui)
(make-instance 'lprn :eui eui :bas bas :num num :gnd gnd
:cas cas :pos pos :qnt qnt :fea fea)))
(defun find-lprp-eui (eui)
- (with-umlisp-query (lrprp (bas str sca fea) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrprp (bas str sca fea) nil eui eui)
(make-instance 'lprp :eui eui :bas bas :str str :sca sca :fea fea)))
(defun find-lspl-eui (eui)
- (with-umlisp-query (lrspl (spv bas) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrspl (spv bas) nil eui eui)
(make-instance 'lspl :eui eui :spv spv :bas bas)))
(defun find-ltrm-eui (eui)
- (with-umlisp-query (lrtrm (bas gen) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrtrm (bas gen) nil eui eui)
(make-instance 'ltrm :eui eui :bas bas :gen gen)))
(defun find-ltyp-eui (eui)
- (with-umlisp-query (lrtyp (bas sca typ) nil eui eui)
+ (ensure-eui-integer eui)
+ (collect-umlisp-query (lrtyp (bas sca typ) nil eui eui)
(make-instance 'ltyp :eui eui :bas bas :sca sca :typ typ)))
(defun find-lwd-wrd (wrd)
(make-instance 'lwd :wrd
- :euilist (with-umlisp-query (lrwd (eui) nil wrd wrd)
+ :euilist (collect-umlisp-query (lrwd (eui) nil wrd wrd)
(ensure-integer eui))))
;;; Semantic Network SQL access functions
(defun find-sdef-ui (ui)
- (with-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin)
+ (collect-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin)
nil ui ui :single t)
(make-instance 'sdef :rt rt :ui ui :styrl sty_rl :stnrtn stn_rtn
:def def :ex ex :un un :rh rh :abr abr :rin rin)))
(defun find-sstre1-ui (ui)
- (with-umlisp-query (srstre1 (ui2 ui3) nil ui ui)
+ (collect-umlisp-query (srstre1 (ui2 ui3) nil ui ui)
(make-instance 'sstre1 :ui ui :ui2 (ensure-integer ui2)
:ui3 (ensure-integer ui3))))
(defun find-sstre1-ui2 (ui2)
- (with-umlisp-query (srstre1 (ui ui3) nil ui2 ui2)
+ (collect-umlisp-query (srstre1 (ui ui3) nil ui2 ui2)
(make-instance 'sstre1 :ui (ensure-integer ui) :ui2 ui2
:ui3 (ensure-integer ui3))))
(defun find-sstr-rl (rl)
- (with-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl)
+ (collect-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl)
(make-instance 'sstr :rl rl :styrl sty_rl :styrl2 sty_rl2 :ls ls)))
(defun find-sstre2-sty (sty)
- (with-umlisp-query (srstre2 (rl sty2) nil sty sty)
+ (collect-umlisp-query (srstre2 (rl sty2) nil sty sty)
(make-instance 'sstre2 :sty (copy-seq sty) :rl rl :sty2 sty2)))
(defun find-sstr-styrl (styrl)
- (with-umlisp-query (srstr (rl sty_rl2 ls) nil styrl styrl)
+ (collect-umlisp-query (srstr (rl sty_rl2 ls) nil styrl styrl)
(make-instance 'sstr :styrl styrl :rl rl :styrl2 sty_rl2 :ls ls)))
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