;;;; Author: Kevin M. Rosenberg
;;;; Date Started: Apr 2000
;;;;
-;;;; $Id: sql-classes.lisp,v 1.40 2003/05/03 20:33:16 kevin Exp $
+;;;; $Id: sql-classes.lisp,v 1.75 2003/05/07 22:53:36 kevin Exp $
;;;;
;;;; This file, part of UMLisp, is
;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
(defun current-srl! (srl)
(setq *current-srl* srl))
-(defmacro with-umlisp-query ((table fields srl where-name where-value
- &key (lrlname "KCUILRL") distinct single
- order like)
- &body body)
- (if single
- `(unless (and ,where-name (not ,where-value))
- (let ((tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,where-value
- :lrlname ,lrlname :single ,single
- :distinct ,distinct :order ,order :like ,like))))
- (when tuple
- (destructuring-bind ,fields tuple
- ,@body))))
- `(unless (and ,where-name (not ,where-value))
- (loop for tuple in
- (umlisp-query ,table ,fields ,srl ,where-name ,where-value
- :lrlname ,lrlname :single ,single :distinct ,distinct :order ,order :like ,like)
- collect (destructuring-bind ,fields tuple
- ,@body)))))
-
-(defmacro umlisp-query (table fields srl where-name where-value
- &key (lrlname "KCUILRL") single distinct order like)
- "Query the UMLisp database. Return a list of umlisp objects whose name
-is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
- `(when (or (not ,where-name) ,where-value)
- (mutex-sql-query
- (query-string-macro ,table ,fields ,srl ,where-name ,where-value
- :lrlname ,lrlname :single ,single :distinct ,distinct :order ,order :like ,like))))
-
-
-(defmacro query-string-macro (table fields &optional srl where-name where-value
- &key (lrlname "KCUILRL") single distinct order like)
+(defmacro query-string (table fields &optional srl where-name where-value
+ &key (lrl "KCUILRL") single distinct order like)
(let* ((%%fields (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
(if distinct "distinct " "") fields table))
- (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) ""))
- (%%lrl (format nil " and ~:@(~A~) <= ~~D" lrlname)))
+ (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}"
+ order)
+ ""))
+ (%%lrl (format nil " and ~:@(~A~)<=" lrl))
+ (%%where (when where-name
+ (format nil " where ~:@(~A~)~A" where-name
+ (if like " like " "")))))
`(concatenate
'string
,%%fields
- (if ,where-name
- (format nil (if (stringp ,where-value)
- (if ,like " where ~A like '%~A%'" " where ~A='~A'")
- " where ~A=~A")
- ,where-name ,where-value)
- "")
- (if ,srl (format nil ,%%lrl ,srl) "")
+ ,@(when %%where (list %%where))
+ ,@(when %%where
+ `((typecase ,where-value
+ (number
+ (concatenate 'string "=" (write-to-string ,where-value)))
+ (null
+ " is null")
+ (t
+ (format nil ,(if like "'%~A%'" "='~A'") ,where-value)))))
+ (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "")
,@(when %%order (list %%order))
- ,@(when single (" limit 1")))))
+ ,@(when single (list " limit 1")))))
-(defun query-string (table fields &optional srl where-name where-value
- &key (lrlname "KCUILRL") single distinct order like)
+(defun query-string-eval (table fields &optional srl where-name where-value
+ &key (lrl "KCUILRL") single distinct order like)
(concatenate
'string
(format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
(if distinct "distinct " "") fields table)
+ (if where-name (format nil " where ~:@(~A~)" where-name) "")
(if where-name
(format nil
- (if (stringp where-value)
- (if like
- " where ~A like '%~A%'"
- " where ~A='~A'")
- " where ~A=~A")
- where-name where-value)
+ (typecase where-value
+ (number "=~D")
+ (null " is null")
+ (t
+ (if like " like '%~A%""='~A'")))
+ where-value)
"")
- (if srl (format nil " and ~:@(~A~) <= ~D" lrlname srl) "")
+ (if srl (format nil " and ~:@(~A~)<=~D" lrl srl) "")
(if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) "")
(if single " limit 1" "")))
+
+(defmacro umlisp-query (table fields srl where-name where-value
+ &key (lrl "KCUILRL") single distinct order like)
+ "Query the UMLisp database. Return a list of umlisp objects whose name
+is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
+ `(mutex-sql-query
+ (query-string ,table ,fields ,srl ,where-name ,where-value
+ :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
+
+(defmacro umlisp-query-eval (table fields srl where-name where-value
+ &key (lrl "KCUILRL") single distinct order like)
+ "Query the UMLisp database. Return a list of umlisp objects whose name
+is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
+ `(mutex-sql-query
+ (query-string-eval ,table ,fields ,srl ,where-name ,where-value
+ :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
+
+;; only WHERE-VALUE and SRL are evaluated
+(defmacro with-umlisp-query ((table fields srl where-name where-value
+ &key (lrl "KCUILRL") distinct single
+ order like)
+ &body body)
+ (let ((value (gensym))
+ (r (gensym)))
+ (if single
+ `(let* ((,value ,where-value)
+ (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single
+ :distinct ,distinct :order ,order
+ :like ,like))))
+ ,@(unless where-name `((declare (ignore ,value))))
+ (when tuple
+ (destructuring-bind ,fields tuple
+ ,@body)))
+ `(let ((,value ,where-value))
+ ,@(unless where-name `((declare (ignore ,value))))
+ (let ((,r '()))
+ (dolist (tuple (umlisp-query ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like))
+ (push (destructuring-bind ,fields tuple ,@body) ,r))
+ (nreverse ,r))
+ #+ignore
+ (loop for tuple in
+ (umlisp-query ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like)
+ collect (destructuring-bind ,fields tuple ,@body))))))
+
+(defmacro with-umlisp-query-eval ((table fields srl where-name where-value
+ &key (lrl "KCUILRL") distinct single
+ order like)
+ &body body)
+ (let ((value (gensym))
+ (r (gensym))
+ (eval-fields (cadr fields)))
+ (if single
+ `(let* ((,value ,where-value)
+ (tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single
+ :distinct ,distinct :order ,order
+ :like ,like))))
+ (when tuple
+ (destructuring-bind ,eval-fields tuple
+ ,@body)))
+ `(let ((,value ,where-value)
+ (,r '()))
+ (dolist (tuple (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like))
+ (push (destructuring-bind ,eval-fields tuple ,@body) ,r))
+ (nreverse ,r)
+ #+ignore
+ (loop for tuple in
+ (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single :distinct ,distinct
+ :order ,order :like ,like)
+ collect (destructuring-bind ,eval-fields tuple ,@body))))))
+
+;;;
+;;; Read from SQL database
+
(defun find-ucon-cui (cui &key (srl *current-srl*))
"Find ucon for a cui"
- (with-umlisp-query (mrcon (kpfstr kcuilrl) srl 'cui (parse-cui cui) :single t)
- (make-instance 'ucon :cui (parse-cui cui)
- :pfstr kpfstr
+ (with-umlisp-query (mrcon (kpfstr kcuilrl) srl cui (parse-cui cui) :single t)
+ (make-instance 'ucon :cui (parse-cui cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
-(defun find-ucon-cui-old (cui &key (srl *current-srl*))
- "Find ucon for a cui"
- (when (stringp cui) (setq cui (parse-cui cui)))
- (when cui
- (let ((ls (format nil "select KPFSTR,KCUILRL from MRCON where CUI=~d" cui)))
- (when srl
- (string-append ls (format nil " and KCUILRL <= ~d" srl)))
- (string-append ls " limit 1")
- (let ((tuple (car (mutex-sql-query ls))))
- (destructuring-bind (kpfstr kcuilrl) tuple
- (make-instance 'ucon :cui cui :pfstr kpfstr
- :lrl (ensure-integer kcuilrl)))))))
-
(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*))
"Find ucon for a cui"
- (with-umlisp-query ('mrcon (kcuilrl) srl 'cui (parse-cui cui) :single t)
- (make-instance 'ucon :cui (parse-cui cui)
- :lrl (ensure-integer kcuilrl)
+ (with-umlisp-query (mrcon (kcuilrl) srl cui (parse-cui cui) :single t)
+ (make-instance 'ucon :cui (parse-cui cui) :lrl (ensure-integer kcuilrl)
:pfstr nil)))
(defun find-pfstr-cui (cui &key (srl *current-srl*))
"Find preferred string for a cui"
- (with-umlisp-query ('mrcon (kpfstr) srl 'cui (parse-cui cui) :single t)
+ (with-umlisp-query (mrcon (kpfstr) srl cui (parse-cui cui) :single t)
kpfstr))
(defun find-ucon-lui (lui &key (srl *current-srl*))
"Find list of ucon for lui"
- (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'lui (parse-lui lui) :distinct t)
- (make-instance 'ucon :cui (ensure-integer cui)
- :pfstr kpfstr
+ (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui (parse-lui lui)
+ :distinct t)
+ (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-sui (sui &key (srl *current-srl*))
"Find list of ucon for sui"
- (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'sui (parse-sui sui) :distinct t)
- (make-instance 'ucon :cui (ensure-integer cui)
- :pfstr kpfstr
+ (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui (parse-sui sui)
+ :distinct t)
+ (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-cuisui (cui sui &key (srl *current-srl*))
"Find ucon for cui/sui"
(when (and cui sui)
- (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'kcuisui
+ (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl kcuisui
(make-cuisui (parse-cui cui) (parse-sui sui)))
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr kpfstr
(defun find-ucon-str (str &key (srl *current-srl*))
"Find ucon that are exact match for str"
- (with-umlisp-query ('mrcon (cui kpfstr kcuilrl) srl 'str str :distinct t)
+ (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr pfstr
:lrl (ensure-integer cuilrl)))
- (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil
- :order '(cui asc) :distinct t)
+ (query-string mrcon (cui kpfstr kcuilrl) srl nil nil
+ :order (cui asc) :distinct t)
:database db)))
+(defun find-ucon-all2 (&key (srl *current-srl*))
+ "Return list of all ucon's"
+ (with-umlisp-query (mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
+ :distinct t)
+ (make-instance 'ucon :cui (ensure-integer cui)
+ :pfstr kpfstr
+ :lrl (ensure-integer kcuilrl))))
+
(defun map-ucon-all (fn &key (srl *current-srl*))
"Map a function over all ucon's"
(with-sql-connection (db)
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr pfstr
:lrl (ensure-integer cuilrl))))
- (query-string 'mrcon '(cui kpfstr kcuilrl) srl nil nil :order '(cui asc) :distinct t)
+ (query-string mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
+ :distinct t)
:database db)))
(defun find-udef-cui (cui &key (srl *current-srl*))
"Return a list of udefs for cui"
- (with-umlisp-query ('mrdef (sab def) srl 'cui (parse-cui cui) :lrlname "KSRL")
+ (with-umlisp-query (mrdef (sab def) srl cui (parse-cui cui) :lrl "KSRL")
(make-instance 'udef :sab sab :def def)))
(defun find-usty-cui (cui &key (srl *current-srl*))
"Return a list of usty for cui"
- (with-umlisp-query ('mrsty (tui sty) srl 'cui (parse-cui cui) :lrlname "KLRL")
+ (with-umlisp-query (mrsty (tui sty) srl cui (parse-cui cui) :lrl "KLRL")
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-usty-word (word &key (srl *current-srl*))
"Return a list of usty that match word"
- (with-umlisp-query ('mrsty (tui sty) srl 'sty word :lrlname 'klrl :like t :distinct t)
+ (with-umlisp-query (mrsty (tui sty) srl sty word :lrl klrl :like t
+ :distinct t)
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-urel-cui (cui &key (srl *current-srl*))
"Return a list of urel for cui"
- (with-umlisp-query ('mrrel (rel cui2 rela sab sl mg kpfstr2) srl 'cui1 (parse-cui cui) :lrlname "KSRL")
- (make-instance 'urel :cui1 (parse-cui cui) :rel rel :cui2 (ensure-integer cui2) :rela rela
- :sab sab :sl sl :mg mg :pfstr2 kpfstr2)))
+ (with-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1
+ (parse-cui cui) :lrl "KSRL")
+ (make-instance 'urel :cui1 (parse-cui cui) :rel rel
+ :cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl
+ :mg mg :pfstr2 kpfstr2)))
(defun find-urel-cui2 (cui2 &key (srl *current-srl*))
"Return a list of urel for cui2"
- (with-umlisp-query ('mrrel (rel cui1 rela sab sl mg kpfstr2) srl 'cui2 (parse-cui cui2) :lrlname "KSRL")
- (make-instance 'urel :cui2 (parse-cui cui2) :rel rel :cui1 (ensure-integer cui1) :rela rela
- :sab sab :sl sl :mg mg :pfstr2 kpfstr2)))
+ (with-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2
+ (parse-cui cui2) :lrl "KSRL")
+ (make-instance 'urel :cui2 (parse-cui cui2) :rel rel
+ :cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl
+ :mg mg :pfstr2 kpfstr2)))
(defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*))
- (mapcar
- #'(lambda (cui) (find-ucon-cui cui :srl srl))
- (remove-duplicates (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl)))))
+ (loop for cui in (remove-duplicates
+ (mapcar #'cui1 (find-urel-cui2 cui2 :srl srl)))
+ collect (find-ucon-cui cui :srl srl)))
(defun find-ucoc-cui (cui &key (srl *current-srl*))
"Return a list of ucoc for cui"
- (with-umlisp-query ('mrcoc (cui2 soc cot cof coa kpfstr2) srl 'cui1 (parse-cui cui)
- :lrlname "KSRL" :order '(cof asc))
+ (with-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1
+ (parse-cui cui) :lrl klrl :order (cof asc))
(setq cui2 (ensure-integer cui2))
(when (zerop cui2) (setq cui2 nil))
- (make-instance 'ucoc :cui1 (parse-cui cui) :cui2 (ensure-integer cui2) :soc soc :cot cot
- :cof (ensure-integer cof) :coa coa :pfstr2 kpfstr2)))
+ (make-instance 'ucoc :cui1 (parse-cui cui) :cui2 (ensure-integer cui2)
+ :soc soc :cot cot :cof (ensure-integer cof) :coa coa
+ :pfstr2 kpfstr2)))
(defun find-ucoc-cui2 (cui2 &key (srl *current-srl*))
"Return a list of ucoc for cui2"
- (with-umlisp-query ('mrcoc (cui1 soc cot cof coa kpfstr2) srl 'cui2 (parse-cui cui2)
- :lrlname "KSRL" :order '(cof asc))
+ (with-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2
+ (parse-cui cui2) :lrl klrl :order (cof asc))
(setq cui2 (ensure-integer cui2))
(when (zerop cui2) (setq cui2 nil))
- (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 (parse-cui cui2) :soc soc :cot cot
- :cof (ensure-integer cof) :coa coa :pfstr2 kpfstr2)))
+ (make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 (parse-cui cui2)
+ :soc soc :cot cot :cof (ensure-integer cof) :coa coa
+ :pfstr2 kpfstr2)))
(defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*))
"List of ucon with co-occurance cui2"
(defun find-ulo-cui (cui &key (srl *current-srl*))
"Return a list of ulo for cui"
- (with-umlisp-query ('mrlo (isn fr un sui sna soui) srl 'cui (parse-cui cui) :lrlname "KLRL")
- (make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un :sui (ensure-integer sui) :sna sna
- :soui soui)))
-
-(defgeneric suistr (lo))
-(defmethod suistr ((lo ulo))
- "Return the string for a ulo object"
- (find-string-sui (sui lo)))
+ (with-umlisp-query (mrlo (isn fr un sui sna soui) srl cui (parse-cui cui)
+ :lrl "KLRL")
+ (make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un
+ :sui (ensure-integer sui) :sna sna :soui soui)))
(defun find-uatx-cui (cui &key (srl *current-srl*))
"Return a list of uatx for cui"
- (with-umlisp-query ('mratx (sab rel atx) srl 'cui (parse-cui cui) :lrlname 'ksrl)
+ (with-umlisp-query (mratx (sab rel atx) srl cui (parse-cui cui) :lrl ksrl)
(make-instance 'uatx :sab sab :rel rel :atx atx)))
(defun find-uterm-cui (cui &key (srl *current-srl*))
"Return a list of uterm for cui"
- (with-umlisp-query ('mrcon (lui lat ts kluilrl) srl 'cui (parse-cui cui) :lrlname 'kluilrl
- :distinct t)
+ (with-umlisp-query (mrcon (lui lat ts kluilrl) srl cui (parse-cui cui)
+ :lrl kluilrl :distinct t)
(make-instance 'uterm :lui (ensure-integer lui) :cui (parse-cui cui)
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-lui (lui &key (srl *current-srl*))
"Return a list of uterm for lui"
- (with-umlisp-query ('mrcon (cui lat ts kluilrl) srl 'lui (parse-lui lui)
- :lrlname 'kluilrl :distinct t)
+ (with-umlisp-query (mrcon (cui lat ts kluilrl) srl lui (parse-lui lui)
+ :lrl kluilrl :distinct t)
(make-instance 'uterm :cui (ensure-integer cui) :lui (parse-lui lui)
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-cuilui (cui lui &key (srl *current-srl*))
"Return single uterm for cui/lui"
- (with-umlisp-query ('mrcon (lat ts kluilrl) srl 'kcuilui
+ (with-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui
(make-cuilui (parse-cui cui) (parse-lui lui))
- :lrlname 'kluilrl :single t)
- (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts :lrl (ensure-integer kluilrl))))
+ :lrl kluilrl :single t)
+ (make-instance 'uterm :cui cui :lui lui :lat lat :ts ts
+ :lrl (ensure-integer kluilrl))))
(defun find-ustr-cuilui (cui lui &key (srl *current-srl*))
"Return a list of ustr for cui/lui"
- (with-umlisp-query ('mrcon (sui stt str lrl) srl 'kcuilui (make-cuilui cui lui) :lrlname 'lrl)
+ (with-umlisp-query (mrcon (sui stt str lrl) srl kcuilui
+ (make-cuilui cui lui) :lrl lrl)
(make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui
:cuisui (make-cuisui cui sui) :stt stt :str str
:lrl (ensure-integer lrl))))
(defun find-ustr-cuisui (cui sui &key (srl *current-srl*))
"Return the single ustr for cuisui"
- (with-umlisp-query ('mrcon (lui stt str lrl) srl 'kcuisui (make-cuisui cui sui) :lrlname 'lrl :single t)
+ (with-umlisp-query (mrcon (lui stt str lrl) srl kcuisui
+ (make-cuisui cui sui) :lrl lrl :single t)
(make-instance 'ustr :sui sui :cui cui :cuisui (make-cuisui cui sui)
- :lui (ensure-integer lui) :stt stt :str str :lrl (ensure-integer lrl))))
+ :lui (ensure-integer lui) :stt stt :str str
+ :lrl (ensure-integer lrl))))
(defun find-ustr-sui (sui &key (srl *current-srl*))
"Return the list of ustr for sui"
- (with-umlisp-query ('mrcon (cui lui stt str lrl) srl 'sui (parse-sui sui) :lrlname 'lrl)
+ (with-umlisp-query (mrcon (cui lui stt str lrl) srl sui (parse-sui sui)
+ :lrl lrl)
(make-instance 'ustr :sui sui :cui cui :stt stt :str str
:cuisui (make-cuisui (ensure-integer cui) (parse-sui sui))
- :lui (ensure-integer lui)
- :lrl (ensure-integer lrl))))
+ :lui (ensure-integer lui) :lrl (ensure-integer lrl))))
(defun find-ustr-sab (sab &key (srl *current-srl*))
"Return the list of ustr for sab"
- (with-umlisp-query ('mrso (kcuisui) srl 'sab sab :lrlname 'srl)
+ (with-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl)
(let ((cuisui (ensure-integer kcuisui)))
(apply #'find-ustr-cuisui
(append
- (multiple-value-list (decompose-cuisui cuisui)) (list :srl srl))))))
+ (multiple-value-list (decompose-cuisui cuisui))
+ (list :srl srl))))))
(defun find-ustr-all (&key (srl *current-srl*))
"Return list of all ustr's"
(clsql:map-query
'list
#'(lambda (cui lui sui stt lrl pfstr)
- (setq cui (ensure-integer cui))
- (setq lui (ensure-integer lui))
- (setq sui (ensure-integer sui))
- (setq lrl (ensure-integer lrl))
- (make-instance 'ustr :cui cui
- :lui lui
- :sui sui
- :cuisui (make-cuisui cui sui)
- :stt stt
- :lrl lrl
- :str pfstr))
- (query-string 'mrcon '(cui lui sui stt lrl kpfstr) srl nil nil :lrlname 'lrl :distinct t
- :order '(sui asc))
+ (make-instance 'ustr :cui (ensure-integer cui)
+ :lui (ensure-integer lui) :sui (ensure-integer sui)
+ :stt stt :str pfstr
+ :cuisui (make-cuisui (ensure-integer cui)
+ (ensure-integer sui))
+ :lrl (ensure-integer lrl)))
+ (query-string mrcon (cui lui sui stt lrl kpfstr) srl nil nil :lrl lrl
+ :distinct t
+ :order (sui asc))
:database db)))
(defun find-string-sui (sui &key (srl *current-srl*))
"Return the string associated with sui"
- (with-umlisp-query ('mrcon (str) srl 'sui sui :lrlname 'lrl :single t)
+ (with-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t)
str))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
- (with-umlisp-query ('mrso (sab code srl tty) srl 'kcuisui (make-cuisui cui sui) :lrlname 'srl)
+ (with-umlisp-query (mrso (sab code srl tty) srl kcuisui
+ (make-cuisui cui sui) :lrl srl)
(make-instance 'uso :sab sab :code code :srl srl :tty tty)))
(defun find-ucxt-cuisui (cui sui &key (srl *current-srl*))
- (with-umlisp-query ('mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc) srl 'kcuisui
- (make-cuisui cui sui) :lrlname 'ksrl)
+ (with-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc)
+ srl kcuisui (make-cuisui cui sui) :lrl ksrl)
(make-instance 'ucxt :sab sab :code code
- :cxn (ensure-integer cxn)
- :cxl cxl :cxs cxs :hcd hcd :rela rela :xc xc
- :rnk (ensure-integer rnk)
+ :cxn (ensure-integer cxn) :cxl cxl :cxs cxs :hcd hcd
+ :rela rela :xc xc :rnk (ensure-integer rnk)
:cui2 (ensure-integer cui2))))
(defun find-usat-ui (cui &optional (lui nil) (sui nil) &key (srl *current-srl*))
(let ((ls (format nil "select CODE,ATN,SAB,ATV from MRSAT where ")))
(cond
- (sui (string-append ls (format nil "KCUISUI=~d" (make-cuisui cui sui))))
- (lui (string-append ls (format nil "KCUILUI=~d and sui=0" (make-cuilui cui lui))))
- (t (string-append ls (format nil "cui=~d and lui=0 and sui=0" cui))))
+ (sui (string-append ls (format nil "KCUISUI=~D" (make-cuisui cui sui))))
+ (lui (string-append ls (format nil "KCUILUI=~D and sui=0"
+ (make-cuilui cui lui))))
+ (t (string-append ls (format nil "cui=~D and lui=0 and sui=0" cui))))
(when srl
- (string-append ls (format nil " and KSRL <= ~d" srl)))
- (let ((usats '()))
- (dolist (tuple (mutex-sql-query ls))
- (destructuring-bind (code atn sab atv) tuple
- (push (make-instance 'usat :code code :atn atn :sab sab :atv atv)
- usats)))
- (nreverse usats))))
-
+ (string-append ls (format nil " and KSRL <= ~D" srl)))
+ (loop for tuple in (mutex-sql-query ls) collect
+ (destructuring-bind (code atn sab atv) tuple
+ (make-instance 'usat :code code :atn atn :sab sab :atv atv)))))
(defun find-usty-tui (tui)
"Find usty for tui"
- (with-umlisp-query ('mrsty (sty) nil 'tui (parse-tui tui) :single t)
+ (with-umlisp-query (mrsty (sty) nil tui (parse-tui tui) :single t)
(make-instance 'usty :tui (parse-tui tui) :sty sty)))
(defun find-usty-sty (sty)
"Find usty for a sty"
- (with-umlisp-query ('mrsty (tui) nil 'sty sty :single t)
+ (with-umlisp-query (mrsty (tui) nil sty sty :single t)
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
(defun find-usty-all ()
"Return list of usty's for all semantic types"
- (with-umlisp-query ('mrsty (tui) nil nil nil :distinct t)
+ (with-umlisp-query (mrsty (tui) nil nil nil :distinct t)
(find-usty-tui tui)))
(defun find-usab-all ()
"Find usab for a key"
- (with-umlisp-query ('mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) nil nil nil)
+ (with-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta
+ rmeta slc scc srl tfr cfr cxty ttyl atnl lat
+ cenc curver sabin) nil nil nil)
(make-instance 'usab :vcui (ensure-integer vcui)
- :rcui (ensure-integer rcui)
- :vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart
- :mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc
- :srl (ensure-integer srl)
+ :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
+ :sf sf :sver sver :mstart mstart :mend mend :imeta imeta
+ :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
:tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
:cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
:curver curver :sabin sabin)))
(defun find-usab-by-key (key-name key)
"Find usab for a key"
- (with-umlisp-query ('mrsab (vcui rcui vsab rsab son sf sver mstart mend imeta rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc curver sabin) nil key-name key :single t)
+ (with-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver mstart
+ mend imeta rmeta slc scc srl tfr cfr cxty
+ ttyl atnl lat cenc curver sabin)
+ nil key-name key :single t)
(make-instance 'usab :vcui (ensure-integer vcui)
- :rcui (ensure-integer rcui)
- :vsab vsab :rsab rsab :son son :sf sf :sver sver :mstart mstart
- :mend mend :imeta imeta :rmeta rmeta :slc slc :scc scc
- :srl (ensure-integer srl)
+ :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
+ :sf sf :sver sver :mstart mstart :mend mend :imeta imeta
+ :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
:tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
:cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
:curver curver :sabin sabin)))
(defun find-usab-rsab (rsab)
"Find usab for rsab"
- (find-usab-by-key "RSAB" rsab))
+ (find-usab-by-key 'rsab rsab))
(defun find-usab-vsab (vsab)
"Find usab for vsab"
- (find-usab-by-key "VSAB" vsab))
+ (find-usab-by-key 'vsab vsab))
(defun find-cui-max ()
(ensure-integer (caar (mutex-sql-query "select max(CUI) from MRCON"))))
(defun find-ucon-tui (tui &key (srl *current-srl*))
"Find list of ucon for tui"
- (with-umlisp-query ('mrsty (cui) srl 'tui (parse-tui tui) :lrlname 'klrl
- :order '(cui asc))
+ (with-umlisp-query (mrsty (cui) srl tui (parse-tui tui) :lrl klrl :order (cui asc))
(find-ucon-cui (ensure-integer cui) :srl srl)))
(defun find-ucon-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word. Optionally, use SQL's LIKE syntax"
- (with-umlisp-query ('mrxw_eng (cui) srl 'wd word :like like :distinct t
- :lrlname 'klrl :order '(cui asc))
+ (with-umlisp-query-eval ('mrxw_eng '(cui) srl 'wd word :like like :distinct t
+ :lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word, optionally use SQL's LIKE syntax"
- (with-umlisp-query ('mrxnw_eng (cui) srl 'nwd word :like like :distinct t
- :lrlname 'klrl :order '(cui asc))
+ (with-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
+ :lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
(defun find-ustr-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
- (with-umlisp-query ('mrxw_eng (cui sui) srl 'wd word
- :lrlname 'klrl
- :order '(cui asc sui asc))
+ (with-umlisp-query (mrxw_eng (cui sui) srl wd word :lrl klrl
+ :order (cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
(defun find-ustr-normalized-word (word &key (srl *current-srl*))
"Return list of ustrs that match word"
- (with-umlisp-query ('mrxnw_eng (cui sui) srl 'nwd word :lrlname 'klrl
- :order '(cui asc sui asc))
+ (with-umlisp-query (mrxnw_eng (cui sui) srl nwd word :lrl klrl
+ :order (cui asc sui asc))
+ (find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
+
+(defun find-ucon-noneng-word (word &key (srl *current-srl*) (like nil))
+ "Return list of ucons that match non-english word"
+ (with-umlisp-query-eval ('mrxw_noneng '(cui) srl 'wd word :like like
+ :distinct t :lrl 'klrl :order '(cui asc))
+ (find-ucon-cui cui :srl srl)))
+
+(defun find-ustr-noneng-word (word &key (srl *current-srl*))
+ "Return list of ustrs that match non-english word"
+ (with-umlisp-query (mrxw_noneng (cui sui) srl wd word :lrl klrl
+ :order (cui asc sui asc))
(find-ustr-cuisui (ensure-integer cui) (ensure-integer sui) :srl srl)))
;; Special tables
(defun find-usrl-all ()
- (with-umlisp-query ('usrl (sab srl) nil nil nil :order '(sab asc))
+ (with-umlisp-query (usrl (sab srl) nil nil nil :order (sab asc))
(make-instance 'usrl :sab sab :srl (ensure-integer srl))))
;;; Multiword lookup and score functions
"Sort a list of objects based on scoring to a string"
(let ((scored '()))
(dolist (obj objs)
- (push
- (list obj
- (score-multiword-match str (funcall lookup-func obj)))
+ (push (list obj (score-multiword-match str (funcall lookup-func obj)))
scored))
(mapcar #'car (sort scored #'> :key #'cadr))))
;;; LEX SQL functions
(defun find-lexterm-eui (eui)
- (with-umlisp-query ('lrwd (wrd) nil 'eui eui :single t)
+ (with-umlisp-query (lrwd (wrd) nil eui eui :single t)
(make-instance 'lexterm :eui eui :wrd wrd)))
(defun find-lexterm-word (wrd)
- (with-umlisp-query ('lrwd (eui) nil 'wrd wrd)
+ (with-umlisp-query (lrwd (eui) nil wrd wrd)
(make-instance 'lexterm :eui (ensure-integer eui)
:wrd (copy-seq wrd))))
;; LEX SQL Read functions
(defun find-labr-eui (eui)
- (with-umlisp-query ('lrabr (bas abr eui2 bas2) nil 'eui eui)
+ (with-umlisp-query (lrabr (bas abr eui2 bas2) nil eui eui)
(make-instance 'labr :eui eui :bas bas :abr abr :bas2 bas2
:eui2 (ensure-integer eui2))))
(defun find-labr-bas (bas)
- (with-umlisp-query ('labr (eui abr eui2 bas2) nil 'bas bas)
+ (with-umlisp-query (labr (eui abr eui2 bas2) nil bas bas)
(make-instance 'labr :eui (ensure-integer eui) :abr abr :bas2 bas2
:bas (copy-seq bas) :eui2 (ensure-integer eui2))))
(defun find-lagr-eui (eui)
- (with-umlisp-query ('lragr (str sca agr cit bas) nil 'eui eui)
+ (with-umlisp-query (lragr (str sca agr cit bas) nil eui eui)
(make-instance 'lagr :eui eui :str str :sca sca :agr agr
:cit cit :bas bas)))
(defun find-lcmp-eui (eui)
- (with-umlisp-query ('lrcmp (bas sca com) nil 'eui eui)
+ (with-umlisp-query (lrcmp (bas sca com) nil eui eui)
(make-instance 'lcmp :eui eui :bas bas :sca sca :com com)))
(defun find-lmod-eui (eui)
- (with-umlisp-query ('lrmod (bas sca psn_mod fea) nil 'eui eui)
+ (with-umlisp-query (lrmod (bas sca psn_mod fea) nil eui eui)
(make-instance 'lmod :eui eui :bas bas :sca sca :psnmod psn_mod :fea fea)))
(defun find-lnom-eui (eui)
- (with-umlisp-query ('lrnom (bas sca eui2 bas2 sca2) nil 'eui eui)
+ (with-umlisp-query (lrnom (bas sca eui2 bas2 sca2) nil eui eui)
(make-instance 'lnom :eui eui :bas bas :sca sca :bas2 bas2 :sca2 sca2
:eui2 (ensure-integer eui2))))
(defun find-lprn-eui (eui)
- (with-umlisp-query ('lrprn (bas num gnd cas pos qnt fea) nil 'eui eui)
+ (with-umlisp-query (lrprn (bas num gnd cas pos qnt fea) nil eui eui)
(make-instance 'lprn :eui eui :bas bas :num num :gnd gnd
:cas cas :pos pos :qnt qnt :fea fea)))
(defun find-lprp-eui (eui)
- (with-umlisp-query ('lrprp (bas str sca fea) nil 'eui eui)
+ (with-umlisp-query (lrprp (bas str sca fea) nil eui eui)
(make-instance 'lprp :eui eui :bas bas :str str :sca sca :fea fea)))
(defun find-lspl-eui (eui)
- (with-umlisp-query ('lrspl (spv bas) nil 'eui eui)
+ (with-umlisp-query (lrspl (spv bas) nil eui eui)
(make-instance 'lspl :eui eui :spv spv :bas bas)))
(defun find-ltrm-eui (eui)
- (with-umlisp-query ('lrtrm (bas gen) nil 'eui eui)
+ (with-umlisp-query (lrtrm (bas gen) nil eui eui)
(make-instance 'ltrm :eui eui :bas bas :gen gen)))
(defun find-ltyp-eui (eui)
- (with-umlisp-query ('lrtyp (bas sca typ) nil 'eui eui)
+ (with-umlisp-query (lrtyp (bas sca typ) nil eui eui)
(make-instance 'ltyp :eui eui :bas bas :sca sca :typ typ)))
(defun find-lwd-wrd (wrd)
(make-instance 'lwd :wrd
- :euilist (with-umlisp-query ('lrwd (eui) nil 'wrd wrd)
+ :euilist (with-umlisp-query (lrwd (eui) nil wrd wrd)
(ensure-integer eui))))
;;; Semantic Network SQL access functions
(defun find-sdef-ui (ui)
- (with-umlisp-query ('srdef (rt sty_rl stn_rtn def ex un rh abr rin)
- nil 'ui ui :single t)
+ (with-umlisp-query (srdef (rt sty_rl stn_rtn def ex un rh abr rin)
+ nil ui ui :single t)
(make-instance 'sdef :rt rt :ui ui :styrl sty_rl :stnrtn stn_rtn
:def def :ex ex :un un :rh rh :abr abr :rin rin)))
(defun find-sstre1-ui (ui)
- (with-umlisp-query ('srstre1 (ui2 ui3) nil 'ui ui)
+ (with-umlisp-query (srstre1 (ui2 ui3) nil ui ui)
(make-instance 'sstre1 :ui ui :ui2 (ensure-integer ui2)
:ui3 (ensure-integer ui3))))
(defun find-sstre1-ui2 (ui2)
- (with-umlisp-query ('srstre1 (ui ui3) nil 'ui2 ui2)
+ (with-umlisp-query (srstre1 (ui ui3) nil ui2 ui2)
(make-instance 'sstre1 :ui (ensure-integer ui) :ui2 ui2
:ui3 (ensure-integer ui3))))
(defun find-sstr-rl (rl)
- (with-umlisp-query ('srstre (sty_rl sty_rl2 ls) nil 'rl rl)
+ (with-umlisp-query (srstre (sty_rl sty_rl2 ls) nil rl rl)
(make-instance 'sstr :rl rl :styrl sty_rl :styrl2 sty_rl2 :ls ls)))
(defun find-sstre2-sty (sty)
- (with-umlisp-query ('srstre2 (rl sty2) nil 'sty sty)
+ (with-umlisp-query (srstre2 (rl sty2) nil sty sty)
(make-instance 'sstre2 :sty (copy-seq sty) :rl rl :sty2 sty2)))
(defun find-sstr-styrl (styrl)
- (with-umlisp-query ('srstr (rl sty_rl2 ls) nil 'styrl styrl)
+ (with-umlisp-query (srstr (rl sty_rl2 ls) nil styrl styrl)
(make-instance 'sstr :styrl styrl :rl rl :styrl2 sty_rl2 :ls ls)))
projects / umlisp.git / blobdiff