(setq *current-srl* srl))
(defmacro query-string (table fields &optional srl where-name where-value
- &key (lrl "KCUILRL") single distinct order like)
- (let* ((%%fields (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
- (if distinct "distinct " "") fields table))
- (%%order (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}"
+ &key (lrl "KCUILRL") single distinct order like limit
+ filter)
+ (let* ((%%fields (format nil "SELECT ~A~{~:@(~A~)~^,~} FROM ~:@(~A~)"
+ (if distinct "DISTINCT " "") fields table))
+ (%%order (if order (format nil " ORDER BY ~{~:@(~A~) ~(~A~)~^,~}"
order)
""))
- (%%lrl (format nil " and ~:@(~A~)<=" lrl))
+ (%%lrl (format nil " AND ~:@(~A~)<=" lrl))
(%%where (when where-name
- (format nil " where ~:@(~A~)~A" where-name
- (if like " like " "")))))
- `(concatenate
- 'string
- ,%%fields
- ,@(when %%where (list %%where))
- ,@(when %%where
- `((typecase ,where-value
- #+ignore
- (fixnum
- (concatenate 'string "='" (prefixed-fixnum-string ,where-value #\0 10) "'"))
- (number
- (concatenate 'string "='" (write-to-string ,where-value) "'"))
- (null
- " is null")
- (t
- (format nil ,(if like "'%~A%'" "='~A'") ,where-value)))))
- (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "")
- ,@(when %%order (list %%order))
- ,@(when single (list " limit 1")))))
+ (format nil " WHERE ~:@(~A~)~A" where-name
+ (if like " like " ""))))
+ (%filter (gensym "FILTER-"))
+ (%single (gensym "SINGLE-"))
+ (%limit (gensym "LIMIT-")))
+ `(let ((,%limit ,limit)
+ (,%single ,single)
+ (,%filter ,filter))
+ (concatenate
+ 'string
+ ,%%fields
+ ,@(when %%where (list %%where))
+ ,@(when %%where
+ `((typecase ,where-value
+ #+ignore
+ (fixnum
+ (concatenate 'string "='" (prefixed-fixnum-string ,where-value #\0 10) "'"))
+ (number
+ (concatenate 'string "='" (write-to-string ,where-value) "'"))
+ (null
+ " IS NULL")
+ (t
+ (format nil ,(if like "'%~A%'" "='~A'") ,where-value)))))
+ (if ,%filter (concatenate 'string
+ ,(if %%where " AND " " WHERE ")
+ ,%filter) "")
+ (if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "")
+ ,@(when %%order (list %%order))
+ (cond
+ ((and ,%single ,%limit)
+ (error "Can't set single (~S) and limit (~S)" ,%single ,%limit))
+ (,%single
+ " LIMIT 1")
+ (,%limit
+ (format nil " LIMIT ~D" ,%limit))
+ (t
+ ""))))))
(defun query-string-eval (table fields &optional srl where-name where-value
- &key (lrl "KCUILRL") single distinct order like)
+ &key (lrl "KCUILRL") single distinct order like limit filter)
+ (when single (setq limit 1))
(concatenate
'string
- (format nil "select ~A~{~:@(~A~)~^,~} from ~:@(~A~)"
- (if distinct "distinct " "") fields table)
- (if where-name (format nil " where ~:@(~A~)" where-name) "")
+ (format nil "SELECT ~A~{~:@(~A~)~^,~} FROM ~:@(~A~)"
+ (if distinct "DISTINCT " "") fields table)
+ (if where-name (format nil " WHERE ~:@(~A~)" where-name) "")
(if where-name
(format nil
(typecase where-value
(number "='~D'")
- (null " is null")
+ (null " IS NULL")
(t
- (if like " like '%~A%""='~A'")))
+ (if like " LINK '%~A%""='~A'")))
where-value)
"")
- (if srl (format nil " and ~:@(~A~)<=~D" lrl srl) "")
- (if order (format nil " order by ~{~:@(~A~) ~(~A~)~^,~}" order) "")
- (if single " limit 1" "")))
+ (if filter (concatenate 'string " AND " filter) nil)
+ (if srl (format nil " AND ~:@(~A~)<=~D" lrl srl) "")
+ (if order (format nil " ORDER BY ~{~:@(~A~) ~(~A~)~^,~}" order) "")
+ (if limit (format nil " LIMIT ~D" limit) "")))
(defmacro umlisp-query (table fields srl where-name where-value
&key (lrl "KCUILRL") single distinct order like
- (query-cmd 'mutex-sql-query))
+ limit filter (query-cmd 'mutex-sql-query))
"Query the UMLisp database. Return a list of umlisp objects whose name
is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
`(,query-cmd
(query-string ,table ,fields ,srl ,where-name ,where-value
- :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
+ :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like
+ :filter ,filter :limit ,limit)))
(defmacro umlisp-query-eval (table fields srl where-name where-value
- &key (lrl "KCUILRL") single distinct order like)
+ &key (lrl "KCUILRL") single distinct order like
+ filter limit)
"Query the UMLisp database. Return a list of umlisp objects whose name
is OBJNAME from TABLE where WHERE-NAME field = WHERE-VALUE with FIELDS"
`(mutex-sql-query
(query-string-eval ,table ,fields ,srl ,where-name ,where-value
- :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like)))
+ :lrl ,lrl :single ,single :distinct ,distinct :order ,order :like ,like
+ :filter ,filter :limit ,limit)))
;; only WHERE-VALUE and SRL are evaluated
(defmacro collect-umlisp-query ((table fields srl where-name where-value
&key (lrl "KCUILRL") distinct single
- order like (query-cmd 'mutex-sql-query))
+ order like (query-cmd 'mutex-sql-query)
+ filter limit)
&body body)
(let ((value (gensym))
(r (gensym)))
(if single
- `(let* ((,value ,where-value)
- (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value
- :lrl ,lrl :single ,single
- :distinct ,distinct :order ,order
- :like ,like
- :query-cmd ,query-cmd))))
- ,@(unless where-name `((declare (ignore ,value))))
- (when tuple
- (destructuring-bind ,fields tuple
- ,@body)))
+ (if (and limit (> limit 1))
+ (error "Can't set limit along with single.")
+ `(let* ((,value ,where-value)
+ (tuple (car (umlisp-query ,table ,fields ,srl ,where-name ,value
+ :lrl ,lrl :single ,single
+ :distinct ,distinct :order ,order
+ :like ,like :filter ,filter
+ :query-cmd ,query-cmd))))
+ ,@(unless where-name `((declare (ignore ,value))))
+ (when tuple
+ (destructuring-bind ,fields tuple
+ ,@body))))
`(let ((,value ,where-value))
,@(unless where-name `((declare (ignore ,value))))
(let ((,r '()))
(dolist (tuple (umlisp-query ,table ,fields ,srl ,where-name ,value
:lrl ,lrl :single ,single :distinct ,distinct
- :order ,order :like ,like))
+ :order ,order :filter ,filter :like ,like
+ :limit ,limit))
(push (destructuring-bind ,fields tuple ,@body) ,r))
(nreverse ,r))
#+ignore
(loop for tuple in
(umlisp-query ,table ,fields ,srl ,where-name ,value
:lrl ,lrl :single ,single :distinct ,distinct
- :order ,order :like ,like)
+ :order ,order :like ,like :filter ,filter :limit ,limit)
collect (destructuring-bind ,fields tuple ,@body))))))
(defmacro collect-umlisp-query-eval ((table fields srl where-name where-value
&key (lrl "KCUILRL") distinct single
- order like)
+ order like filter limit)
&body body)
(let ((value (gensym))
(r (gensym))
(tuple (car (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
:lrl ,lrl :single ,single
:distinct ,distinct :order ,order
- :like ,like))))
+ :like ,like :filter ,filter
+ :limit ,limit))))
(when tuple
(destructuring-bind ,eval-fields tuple
,@body)))
(,r '()))
(dolist (tuple (umlisp-query-eval ,table ,fields ,srl ,where-name ,value
:lrl ,lrl :single ,single :distinct ,distinct
- :order ,order :like ,like))
+ :order ,order :like ,like
+ :filter ,filter :limit ,limit))
(push (destructuring-bind ,eval-fields tuple ,@body) ,r))
(nreverse ,r)
#+ignore
(loop for tuple in
(umlisp-query-eval ,table ,fields ,srl ,where-name ,value
:lrl ,lrl :single ,single :distinct ,distinct
- :order ,order :like ,like)
+ :order ,order :like ,like :filter ,filter
+ :limit ,limit)
collect (destructuring-bind ,eval-fields tuple ,@body))))))
;;;
(setq ,sui (parse-sui ,sui))
,sui))
+(defmacro ensure-aui-integer (aui)
+ `(if (stringp ,aui)
+ (setq ,aui (parse-aui ,aui))
+ ,aui))
+
+(defmacro ensure-rui-integer (rui)
+ `(if (stringp ,rui)
+ (setq ,rui (parse-rui ,rui))
+ ,rui))
+
(defmacro ensure-tui-integer (tui)
`(if (stringp ,tui)
(setq ,tui (parse-tui ,tui))
(setq ,eui (parse-eui ,eui))
,eui))
-(defun find-ucon-cui (cui &key (srl *current-srl*))
- "Find ucon for a cui"
+(defun make-ucon-cui (cui)
+ (ensure-cui-integer cui)
+ (when cui
+ (make-instance 'ucon :cui cui)))
+
+(defun find-ucon-cui (cui &key (srl *current-srl*) without-pfstr)
+ "Find ucon for a cui. If set SAB, the without-pfstr is on by default"
(ensure-cui-integer cui)
(unless cui (return-from find-ucon-cui nil))
- (let ((tuple (car (mutex-sql-query
- (format nil
- "SELECT kcuilrl,str FROM MRCONSO WHERE CUI=~D AND KPFENG=1~A"
- cui (if srl (format nil " AND SRL<=~D" srl) ""))))))
- (unless tuple
- (setq tuple (car (mutex-sql-query
- (format nil
- "SELECT kcuilrl,str FROM MRCONSO WHERE CUI=~D"
- cui (if srl (format nil " AND SRL<=~D" srl) nil))))))
- (unless tuple
- (return-from find-ucon-cui nil))
- (make-instance 'ucon :cui cui :pfstr (second tuple)
- :lrl (ensure-integer (first tuple)))))
-
-(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*))
- "Find ucon for a cui"
+ (if without-pfstr
+ (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t)
+ (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl)
+ :pfstr nil)))
+ (or
+ (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t :filter "KPFENG=1")
+ (make-instance 'ucon :cui cui :pfstr str
+ :lrl kcuilrl))
+ (collect-umlisp-query (mrconso (kcuilrl str) srl cui cui :single t)
+ (make-instance 'ucon :cui cui :pfstr str
+ :lrl kcuilrl))))
+
+(defun find-uconso-cui (cui &key (srl *current-srl*))
+ "Find ucon for a cui. If set SAB, the without-pfstr is on by default"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t)
- (make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl)
- :pfstr nil)))
+ (unless cui (return-from find-uconso-cui nil))
+
+ (collect-umlisp-query (mrconso (lat ts lui stt sui ispref aui saui scui sdui sab tty code str
+ srl suppress cvf kpfeng kcuisui kcuilui kcuilrl
+ kluilrl ksuilrl) srl cui cui)
+ (make-instance 'uconso :cui cui :lat lat :ts ts :lui lui :stt stt :sui sui :ispref ispref
+ :aui aui :saui saui :scui scui :sdui sdui :sab sab :tty tty :code code
+ :str str :srl srl :suppress suppress :cvf cvf :kpfeng kpfeng
+ :kcuisui kcuisui :kcuilui kcuilui :kcuilrl kcuilrl :kluilrl kluilrl
+ :ksuilrl ksuilrl)))
(defun find-pfstr-cui (cui &key (srl *current-srl*))
"Find preferred string for a cui"
(ensure-cui-integer cui)
(or
- (caar (mutex-sql-query
- (format nil "SELECT DISTINCT str FROM MRCONSO WHERE CUI=~D AND KPFENG=1~A LIMIT 1"
- cui (if srl (format nil " AND SRL<=~D" srl) ""))))
- (caar (mutex-sql-query
- (format nil "SELECT DISTINCT str FROM MRCONSO WHERE CUI=~D~A LIMIT 1"
- cui (if srl (format nil " AND SRL<=~D" srl) ""))))))
+ (collect-umlisp-query (mrconso (str) srl cui cui :distinct t
+ :filter " KPFENG=1" :single t)
+ str)
+ (collect-umlisp-query (mrconso (str) srl cui cui :distinct t
+ :single t)
+ str)))
+
+(defun find-lrl-cui (cui &key (srl *current-srl*))
+ "Find LRL for a cui"
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :distinct t :single t)
+ (ensure-integer kcuilrl)))
(defun find-ucon-lui (lui &key (srl *current-srl*))
"Find list of ucon for lui"
(ensure-lui-integer lui)
- (collect-umlisp-query (mrconso (cui kcuilrl) srl lui lui
- :distinct t)
- (make-instance 'ucon :cui (ensure-integer cui) :pfstr (find-pfstr-cui cui)
- :lrl (ensure-integer kcuilrl)))
(unless lui (return-from find-ucon-lui nil))
-
- (let ((tuple (car (mutex-sql-query "SELECT cui,kcuilrl,str FROM MRCONSO WHERE LUI=~D AND KPFENG=1~A ORDER BY kcuilrl ASC LIMIT 1"
- lui (if srl (format nil " AND SRL<=~D" srl) "")))))
- (unless tuple
- (setq tuple (car (mutex-sql-query "SELECT cui,kcuilrl,str FROM MRCONSO WHERE LUI=~D~A ORDER BY kcuilrl ASC LIMIT 1"
- lui (if srl (format nil " AND SRL<=~D" srl) "")))))
- (unless tuple
- (return-from find-ucon-lui nil))
- (make-instance 'ucon :cui (first tuple) :pfstr (third tuple)
- :lrl (ensure-integer (third tuple)))))
+ (or
+ (collect-umlisp-query (mrconso (cui kcuilrl str) srl lui lui
+ :filter " KPFENG=1" :single t)
+ (make-instance 'ucon :cui (ensure-integer cui)
+ :pfstr str :lrl (ensure-integer kcuilrl)))
+ (collect-umlisp-query (mrconso (cui kcuilrl str) srl lui lui
+ :single t)
+ (make-instance 'ucon :cui (ensure-integer cui)
+ :pfstr str :lrl (ensure-integer kcuilrl)))))
(defun find-ucon-sui (sui &key (srl *current-srl*))
"Find list of ucon for sui"
(defun find-ucon-aui (aui &key (srl *current-srl*))
"Find list of ucon for aui"
- (ensure-sui-integer aui)
+ (ensure-aui-integer aui)
(collect-umlisp-query (mrconso (cui kcuilrl) srl aui aui :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr (find-pfstr-cui cui)
:lrl (ensure-integer kcuilrl))))
(defun find-udoc-key (key)
"Return list of abbreviation documentation for a key"
(collect-umlisp-query (mrdoc (value type expl) nil dockey key)
- (make-instance 'udoc :key key :value value :type type :expl expl)))
+ (make-instance 'udoc :dockey key :dvalue value :dtype type :expl expl)))
(defun find-udoc-value (value)
"Return abbreviation documentation"
(collect-umlisp-query (mrdoc (dockey type expl) nil value value)
- (make-instance 'udoc :key dockey :value value :type type :expl expl)))
+ (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl)))
-(defun find-udoc-key-value (key value)
- (let ((tuple (car (mutex-sql-query
- (format nil "SELECT TYPE,EXPL FROM MRDOC WHERE DOCKEY='~A' AND VALUE='~A'"
- key value)))))
- (when tuple
- (make-instance 'udoc :key key :value value :type (first tuple) :expl (second tuple)))))
+(defun find-udoc-key-value (dockey value)
+ (collect-umlisp-query (mrdoc (type expl) nil dockey dockey :filter (format nil "VALUE='~A'" value))
+ (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl)))
(defun find-udoc-all ()
"Return all abbreviation documentation"
(collect-umlisp-query (mrdoc (dockey value type expl) nil nil nil)
- (make-instance 'udoc :key dockey :value value :type type :expl expl)))
+ (make-instance 'udoc :dockey dockey :dvalue value :dtype type :expl expl)))
(defun find-usty-cui (cui &key (srl *current-srl*))
"Return a list of usty for cui"
:distinct t)
(make-instance 'usty :tui (ensure-integer tui) :sty sty)))
-(defun find-urel-cui (cui &key (srl *current-srl*))
+(defun find-urel-cui (cui &key (srl *current-srl*) filter without-pfstr2)
"Return a list of urel for cui"
(ensure-cui-integer cui)
(collect-umlisp-query (mrrel (aui1 rel stype1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
- srl cui1 cui :lrl "KSRL")
- (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
+ srl cui1 cui :lrl "KSRL" :filter filter)
+ (let ((rel
+ (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
+ :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2
+ :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
+ :suppress suppress :cvf cvf)))
+ (unless without-pfstr2
+ (setf (slot-value rel 'pfstr2) (find-pfstr-cui cui2)))
+ rel)))
+
+(defun find-urel-rui (rui &key (srl *current-srl*))
+ "Return the urel for a rui"
+ (ensure-rui-integer rui)
+ (collect-umlisp-query (mrrel (aui1 rel stype1 cui1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
+ srl rui rui :lrl "KSRL" :single t)
+ (make-instance 'urel :cui1 cui1 :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
:cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2
- :rui rui :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
+ :rui (ensure-integer rui) :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
:suppress suppress :cvf cvf :pfstr2 (find-pfstr-cui cui2))))
(defun find-cui2-urel-cui (cui &key (srl *current-srl*))
(ensure-cui-integer cui2)
(collect-umlisp-query (mrrel (rel cui1 aui1 stype1 aui2 stype2 rela rui srui sab sl rg dir suppress cvf)
srl cui2 cui2 :lrl "KSRL")
- (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2) :stype2 stype2 :rui rui :srui srui
- :stype1 stype1 :cui1 (ensure-integer cui1) :aui1 (ensure-integer aui1)
+ (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2)
+ :stype2 stype2 :rui (ensure-integer rui) :srui srui
+ :stype1 stype1 :cui1 (ensure-integer cui1)
+ :aui1 (ensure-integer aui1)
:rela rela :sab sab :sl sl :rg rg :dir dir :suppress suppress :cvf cvf
:pfstr2 (find-pfstr-cui cui2))))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
(ensure-sui-integer sui)
(ensure-cui-integer cui)
- (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui) srl kcuisui
- (make-cuisui cui sui) :lrl srl)
+ (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str)
+ srl kcuisui (make-cuisui cui sui) :lrl srl)
(make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty
- :cui cui :sui sui :saui saui :sdui sdui :scui scui)))
+ :cui cui :sui sui :saui saui :sdui sdui :scui scui
+ :lat lat :str str)))
+
+(defun find-uso-cui (cui &key (srl *current-srl*) (english-only nil) limit)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui lat str sui)
+ srl cui cui :lrl srl :limit limit
+ :filter (when english-only "LAT='ENG'"))
+ (make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty
+ :cui cui :sui sui :saui saui :sdui sdui :scui scui
+ :lat lat :str str)))
(defun find-uso-aui (aui &key (srl *current-srl*))
(ensure-sui-integer aui)
- (collect-umlisp-query (mrconso (sab cui sui code srl tty saui sdui scui) srl aui
- aui :lrl srl :single t)
+ (collect-umlisp-query (mrconso (sab cui sui code srl tty saui sdui scui lat
+ str) srl aui aui :lrl srl :single t)
(make-instance 'uso :aui aui :cui cui :sab sab :code code :srl srl :tty tty
- :sui sui :saui saui :sdui sdui :scui scui)))
+ :sui sui :saui saui :sdui sdui :scui scui :lat lat
+ :str str)))
(defun find-ucxt-cuisui (cui sui &key (srl *current-srl*))
(ensure-cui-integer cui)
(ensure-cui-integer cui)
(ensure-lui-integer lui)
(ensure-sui-integer sui)
- (let ((ls "select CODE,ATN,SAB,ATV from MRSAT where "))
+ (let ((ls "SELECT CODE,ATN,SAB,ATV FROM MRSAT WHERE "))
(cond
(sui (string-append ls "KCUISUI='"
(integer-string (make-cuisui cui sui) 14)
(find-usty-tui tui)))
(defun find-usab-all ()
- "Find usab for a key"
+ "Return all usab objects"
(collect-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver vstart vend imeta
rmeta slc scc srl tfr cfr cxty ttyl atnl lat
cenc curver sabin ssn scit) nil nil nil)
:torule torule :tores tores :maprule maprule :maptype maptype :mapatn mapatn
:mapatv mapatv :cvf cvf)))
+(defun find-usmap-cui (cui)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrsmap (mapsetsab fromexpr fromtype rel rela toexpr totype cvf)
+ nil mapsetcui cui)
+ (make-instance 'usmap :mapsetcui cui :mapsetsab mapsetsab
+ :fromexpr fromexpr :fromtype fromtype
+ :rel rel :rela rela :toexpr toexpr :totype totype
+ :cvf cvf)))
+
;;;; Cross table find functions
(defun find-ucon-tui (tui &key (srl *current-srl*))
:lrl 'klrl :order '(cui asc))
(find-ucon-cui cui :srl srl)))
+(defun find-ucon-word-sab (word &key sab (srl *current-srl*) (like nil))
+ "Return list of ustr that match word in matching SAB. Optionally, use SQL's LIKE syntax"
+ (let ((query (format nil "SELECT c.cui FROM MRCONSO c,MRXW_ENG x WHERE x.WD ~A '~A' AND x.cui=c.cui AND ~A ~A"
+ (if like "LIKE" "=")
+ (clsql-sys::sql-escape-quotes word)
+ (etypecase sab
+ (string
+ (format nil " c.sab='~A'" (clsql-sys::sql-escape-quotes sab)))
+ (cons
+ (format nil " c.sab IN (~{'~A'~^,~})"
+ (mapcar 'clsql-sys::sql-escape-quotes sab)))
+ (null
+ (error "SAB missing")))
+ (if srl (format nil "AND KCUILRL <= ~A" srl) ""))))
+ (loop for tuple in (mutex-sql-query query)
+ collect (make-instance 'ucon :cui (first tuple)))))
+
+(defun find-ustr-word-sab (word &key sab (srl *current-srl*) (like nil))
+ "Return list of ustr that match word in matching SAB. Optionally, use SQL's LIKE syntax"
+ (let ((query (format nil "SELECT c.sui,c.cui,c.lui,c.str,c.lrl,c.stt,c.suppress,c.cuisui FROM MRCONSO c,MRXW_ENG x WHERE x.WD ~A '~A' AND x.cui=c.cui AND x.lui=c.lui AND x.sui=c.sui AND ~A ~A"
+ (if like "LIKE" "=")
+ (clsql-sys::sql-escape-quotes word)
+ (typecase sab
+ (string
+ (format nil " c.sab='" (clsql-sys::sql-escape-quotes sab)))
+ (cons
+ (format nil " c.sab IN (~('~A'~^,~))"
+ (mapcar 'clsql-sys::sql-escape-quotes sab)))
+ (t
+ (error "SAB missing")))
+ (if srl (format nil "AND KCUILRL <= ~D" srl) ""))))
+ (loop for tuple in (mutex-sql-query query)
+ collect (destructuring-bind (sui cui lui str lrl stt suppress cuisui) tuple
+ (make-instance 'ustr :sui sui :cui cui :lui lui :str str :lrl lrl
+ :stt stt :suppress suppress :cuisui cuisui)))))
+
+
(defun find-ucon-normalized-word (word &key (srl *current-srl*) (like nil))
"Return list of ucons that match word, optionally use SQL's LIKE syntax"
(collect-umlisp-query-eval ('mrxnw_eng '(cui) srl 'nwd word :like like :distinct t
;;; Multiword lookup and score functions
(defun find-uobj-multiword (str obj-lookup-fun sort-fun key srl
- only-exact-if-match limit)
+ only-exact-if-match limit &key extra-lookup-args)
(let ((uobjs '()))
(dolist (word (delimited-string-to-list str #\space))
- (setq uobjs (append uobjs (funcall obj-lookup-fun word :srl srl))))
+ (setq uobjs (append uobjs (apply obj-lookup-fun word :srl srl extra-lookup-args))))
(let ((sorted
(funcall sort-fun str
(delete-duplicates uobjs :test #'= :key key))))
(defun find-ucon-multiword (str &key (srl *current-srl*)
(only-exact-if-match t)
- limit)
- (find-uobj-multiword str #'find-ucon-word #'sort-score-pfstr-str
- #'cui srl only-exact-if-match limit))
+ limit
+ sab)
+ (if sab
+ (find-uobj-multiword str #'find-ucon-word-sab #'sort-score-pfstr-str
+ #'cui srl only-exact-if-match limit
+ :extra-lookup-args (list :sab sab))
+ (find-uobj-multiword str #'find-ucon-word #'sort-score-pfstr-str
+ #'cui srl only-exact-if-match limit)))
(defun find-uterm-multiword (str &key (srl *current-srl*)
(only-exact-if-match t)
(defun find-ustr-multiword (str &key (srl *current-srl*)
(only-exact-if-match t)
- limit)
- (find-uobj-multiword str #'find-ustr-word #'sort-score-ustr-str
- #'sui srl only-exact-if-match limit))
+ limit
+ sab)
+ (if sab
+ (find-uobj-multiword str #'find-ustr-word-sab #'sort-score-ustr-str
+ #'sui srl only-exact-if-match limit
+ :extra-lookup-args (list :sab sab))
+ (find-uobj-multiword str #'find-ustr-word #'sort-score-ustr-str
+ #'sui srl only-exact-if-match limit)))
(defun sort-score-pfstr-str (str uobjs)
"Return list of sorted and scored ucons. Score by match of str to ucon-pfstr"
(collect-umlisp-query (ustats (name count) nil srl srl :order (name asc))
(make-instance 'ustats :name name :hits (ensure-integer count))))
-
-
-(defun find-bsab-sab (sab)
- (collect-umlisp-query (bonus_sab (name count) nil sab sab :single t)
- (make-instance 'bsab :sab sab :name name :hits (ensure-integer count))))
-
-(defun find-bsab-all ()
- (collect-umlisp-query (bonus_sab (sab name count) nil nil nil :order (sab asc))
- (make-instance 'bsab :sab sab :name name :hits (ensure-integer count))))
-
-(defun find-btty-tty (tty)
- (collect-umlisp-query (bonus_tty (name count) nil tty tty :single t)
- (make-instance 'btty :tty tty :name name :hits (ensure-integer count))))
-
-(defun find-btty-all ()
- (collect-umlisp-query (bonus_tty (tty name count) nil nil nil :order (tty asc))
- (make-instance 'btty :tty tty :name name :hits (ensure-integer count))))
-
-(defun find-brel-rel (rel)
- (collect-umlisp-query (bonus_rel (sab sl rel rela count) nil rel rel)
- (make-instance 'brel :sab sab :sl sl :rel rel :rela rela
- :hits (ensure-integer count))))