;;;; Author: Kevin M. Rosenberg
;;;; Created: Apr 2000
;;;;
-;;;; $Id$
-;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2004 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2012 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
(in-package #:umlisp)
-(defvar +umls-sql-map+
- '((:2004aa . "KUMLS2004AA")))
-(defvar +default-umls-db+ :2004aa)
-
+(defparameter +umls-sql-map+
+ '((:2004aa . "KUMLS2004AA")
+ (:2006ac . "KUMLS2006AC")
+ (:2006ad . "MTS2006AD")
+ (:2009ab . "MTS2009AB")
+ (:2010aa . "MTS2010AA")
+ (:2012ab_all . "MTS2012AB_ALL")
+ (:2014ab . "MTS2014AB")
+ (:2017aa . "KUMLS2017AA")))
+(defvar +default-umls-db+ "MTS2012AB_ALL")
(defun lookup-db-name (db)
(cdr (assoc (ensure-keyword db) +umls-sql-map+)))
(defun umls-sql-db ()
*umls-sql-db*)
-(defun umls-sql-db! (db)
- (setq *umls-sql-db* db))
+(defun set-umls-sql-db (db)
+ (etypecase db
+ (string
+ (setq *umls-sql-db* db))
+ (keyword
+ (setq *umls-sql-db* (lookup-db-name db)))))
-(defvar *umls-sql-user* "secret")
+(defvar *umls-sql-user* "umls")
(defun umls-sql-user ()
*umls-sql-user*)
-(defun umls-sql-user! (u)
+(defun set-umls-sql-user (u)
(sql-disconnect-pooled)
(setq *umls-sql-user* u))
-(defvar *umls-sql-passwd* "secret")
+(defvar *umls-sql-passwd* "umls")
(defun umls-sql-passwd ()
*umls-sql-passwd*)
-(defun umls-sql-passwd! (p)
+(defun set-umls-sql-passwd (p)
(sql-disconnect-pooled)
(setq *umls-sql-passwd* p))
(defvar *umls-sql-host* "localhost")
(defun umls-sql-host ()
*umls-sql-host*)
-(defun umls-sql-host! (h)
+(defun set-umls-sql-host (h)
(sql-disconnect-pooled)
(setq *umls-sql-host* h))
(defvar *umls-sql-type* :mysql)
(defun umls-sql-type ()
*umls-sql-type*)
-(defun umls-sql-type! (h)
+(defun set-umls-sql-type (h)
(sql-disconnect-pooled)
(setq *umls-sql-type* h))
+(defun umls-connection-spec ()
+ (if (eql *umls-sql-type* :mysql)
+ (list *umls-sql-host* *umls-sql-db*
+ *umls-sql-user* *umls-sql-passwd*
+ nil '((:local-infile . 1))
+ )
+ (list *umls-sql-host* *umls-sql-db*
+ *umls-sql-user* *umls-sql-passwd*)))
+
(defun sql-connect ()
"Connect to UMLS database, automatically used pooled connections"
- (clsql:connect (list *umls-sql-host* (lookup-db-name *umls-sql-db*)
- *umls-sql-user* *umls-sql-passwd*)
- :database-type *umls-sql-type* :pool t))
+ (let ((db (clsql:connect (umls-connection-spec)
+ :database-type *umls-sql-type*
+ :encoding :utf-8
+ :pool t)))
+ db))
(defun sql-disconnect (conn)
"Disconnect from UMLS database, but put connection back into pool"
(defmacro with-sql-connection ((conn) &body body)
`(let ((,conn (sql-connect)))
(unwind-protect
- (progn ,@body)
+ (progn ,@body)
(when ,conn (clsql:disconnect :database ,conn)))))
-(defun sql (stmt conn)
- (if (string-equal "SELECT" (subseq stmt 0 6))
- (sql-query stmt conn)
- (sql-execute stmt conn)))
-
(defun sql-query (cmd conn &key (result-types :auto))
(clsql:query cmd :database conn :result-types result-types :field-names nil))
(defun sql-execute (cmd conn)
(clsql:execute-command cmd :database conn))
+(defun sql (stmt conn)
+ (if (string-equal "SELECT" (subseq stmt 0 6))
+ (sql-query stmt conn)
+ (sql-execute stmt conn)))
+
(defun umls-sql (stmt)
(check-type stmt string)
(with-sql-connection (conn)
(defmacro with-mutex-sql ((conn) &body body)
`(let ((,conn (sql-connect)))
(unwind-protect
- (progn ,@body)
+ (progn ,@body)
(when ,conn (sql-disconnect ,conn)))))
(defun mutex-sql-execute (cmd)