dnl Must reset CDPATH so that bash's cd does not print to stdout
dnl CDPATH=
-AC_INIT(src/ctrec.cpp)
-AM_INIT_AUTOMAKE(ctsim,0.6.0-b3)
+AC_INIT(src/ctsim.cpp)
+AM_INIT_AUTOMAKE(ctsim,3.5.0)
AM_CONFIG_HEADER(config.h)
dnl Checks for programs.
AC_PROG_INSTALL
AC_PROG_MAKE_SET
AC_PROG_RANLIB
+
+CFLAGS="$CFLAGS -I/usr/local/include"
+LDFLAGS="$LDFLAGS -L/usr/local/lib"
AC_PROG_CC
AC_PROG_CXX
+AC_C_BIGENDIAN
+AC_PATH_PROG(wxconfig,wx-config)
dnl AC_MSG_CHECKING([that the compiler works])
dnl AC_TRY_RUN([ main(int ac, char **av) { return 0; } ], AC_MSG_RESULT(yes), AC_MSG_RESULT(no) AC_MSG_ERROR(Could not compile and run even a trivial ANSI C program - check CC.), AC_MSG_ERROR(Could not compile and run even a trivial ANSI C program - check CC.))
AC_CHECK_SIZEOF(float, 4)
AC_CHECK_SIZEOF(double, 8)
-dnl ---------------------------------------------------------------------------
-dnl a slightly better AC_C_BIGENDIAN macro which allows cross-compiling
-dnl from wxGTK (www.wxwindows.org) - LGPL license
-dnl ---------------------------------------------------------------------------
-
-AC_DEFUN(WX_C_BIGENDIAN,
-[AC_CACHE_CHECK(whether byte ordering is bigendian, ac_cv_c_bigendian,
-[ac_cv_c_bigendian=unknown
-# See if sys/param.h defines the BYTE_ORDER macro.
-AC_TRY_COMPILE([#include <sys/types.h>
-#include <sys/param.h>], [
-#if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN
- bogus endian macros
-#endif], [# It does; now see whether it defined to BIG_ENDIAN or not.
-AC_TRY_COMPILE([#include <sys/types.h>
-#include <sys/param.h>], [
-#if BYTE_ORDER != BIG_ENDIAN
- not big endian
-#endif], ac_cv_c_bigendian=yes, ac_cv_c_bigendian=no)])
-if test $ac_cv_c_bigendian = unknown; then
-AC_TRY_RUN([main () {
- /* Are we little or big endian? From Harbison&Steele. */
- union
- {
- long l;
- char c[sizeof (long)];
- } u;
- u.l = 1;
- exit (u.c[sizeof (long) - 1] == 1);
-}], ac_cv_c_bigendian=no, ac_cv_c_bigendian=yes, ac_cv_c_bigendian=unknown)
-fi])
-if test $ac_cv_c_bigendian = unknown; then
- AC_MSG_WARN([Assuming little-endian target machine - this may be overriden by adding the line "ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}"
-to config.cache file])
-fi
-if test $ac_cv_c_bigendian = yes; then
- AC_DEFINE(WORDS_BIGENDIAN)
-fi
-])
-
-WX_C_BIGENDIAN
-
-
dnl Checks for libraries.
-AC_CHECK_LIB(z, main, [ zlib="true" ], [ zlib="false" ; AC_MSG_WARN([zlib missing. Will need zlib for PNG support])])
-AC_CHECK_LIB(m, main)
+AC_CHECK_LIB(z, deflate, [ zlib="true" ], [ zlib="false" ; AC_MSG_WARN([zlib missing. Will need zlib for PNG support])])
+AC_CHECK_LIB(m, sin)
AC_CHECK_LIB(curses, main, [curses=true], [curses=false])
AC_CHECK_LIB(ncurses, main, [ncurses=true], [ncurses=false])
AC_CHECK_LIB(g2, main, [g2=true], [g2=false])
-AC_CHECK_LIB(wx_gtk, main, [wxwin=true; wx_gtk=true; AC_DEFINE(HAVE_WXWINDOWS)], [wxwin=false])
-AC_CHECK_LIB(wx_msw, main, [wxwin=true; wx_msw=true; AC_DEFINE(HAVE_WXWINDOWS)], [wxwin=false])
+AC_CHECK_LIB(readline, main, [readline=true; AC_DEFINE(HAVE_READLINE)], [readline=false], [-lcurses])
+AC_CHECK_LIB(ncurses, main, [ncurses=true; AC_DEFINE(HAVE_NCURSES)], [ncurses=false])
+AC_CHECK_LIB(curses, main, [curses=true; AC_DEFINE(HAVE_CURSES)], [curses=false])
+wxwin=false
+AC_CHECK_LIB(wx_gtk, main, [wxwin=true; wx_gtk=true; AC_DEFINE(HAVE_WXWINDOWS)])
+AC_CHECK_LIB(wx, main, [wxwin=true; wx_msw=true; AC_DEFINE(HAVE_WXWINDOWS)])
+AC_CHECK_LIB(hdf5, main, [hdf5=true], [hdf5=false], -lz)
+AC_CHECK_LIB(fftw, fftw_one, [fftw=true; AC_DEFINE(HAVE_FFTW)], [fftw=false])
+AC_CHECK_LIB(GL, main, [libgl=true], [libgl=false], [-L/usr/X11R6/lib -lXt -lXext])
+AC_CHECK_LIB(pthread, main, [pthread=true], [pthread=false])
if test "$zlib" = "true" ; then
AC_CHECK_LIB(png, main, [png=true ; AC_DEFINE(HAVE_PNG)], [png=false])
dnl Checks for header files.
AC_HEADER_STDC
-AC_CHECK_HEADERS(fcntl.h unistd.h getopt.h sys/fcntl.h setjmp.h stdarg.h stddef.h sys/types.h sys/stat.h string.h ctype.h math.h stdio.h netinet/in.h inttypes.h sys/param.h stdint.h stdlib.h g2.h)
+AC_CHECK_HEADERS(fcntl.h unistd.h getopt.h sys/fcntl.h setjmp.h stdarg.h stddef.h sys/types.h sys/stat.h string.h ctype.h math.h stdio.h netinet/in.h inttypes.h sys/param.h stdint.h stdlib.h g2.h assert.h sys/time.h sys/resource.h sys/time.h readline.h readline/readline.h)
dnl Checks for typedefs, structures, and compiler characteristics.
AC_C_CONST
dnl Checks for library functions.
AC_FUNC_VPRINTF
-AC_CHECK_FUNCS(strtod strtol snprintf htonl)
+AC_CHECK_FUNCS(strtod strtol snprintf htonl usleep vsprintf vsnprintf)
AC_CHECK_FUNC(basename)
AC_CHECK_FUNC(setjmp)
+AC_CHECK_FUNC(setpriority)
+AC_CHECK_FUNC(time)
+AC_CHECK_FUNC(gettimeofday)
+
if test "${OSTYPE}" = "cygwin" ; then
getopt_long=false
else
AC_CHECK_FUNC(getopt_long, [ getopt_long=true ], [ getopt_long=false ])
fi
+
+if test "${pthread}" = "true" ; then
+ AC_ADD_GCC_CFLAGS([-pthread -D_REENTRANT])
+ AC_DEFINE(HAVE_WXTHREADS)
+fi
+
if test "${getopt_long}" = "false" ; then
- my_includes="$myincludes -I../getopt"
+ my_includes="$my_includes -I../getopt"
AC_DEFINE(HAVE_GETOPT_LONG)
ctlibs_base="$ctlibs_base -lgetopt"
LDFLAGS="$LDFLAGS -L../getopt"
AM_CONDITIONAL(INCLUDED_GETOPT_LONG, test 1==1)
fi
+if test "${readline}" = "true" ; then
+ ctlibs_base="$ctlibs_base -lreadline"
+ if test "${ncurses}" = "true"; then
+ ctlibs_base="$ctlibs_base -lncurses"
+ elif test "${curses}" = "true"; then
+ ctlibs_base="$ctlibs_base -lcurses"
+ fi
+fi
+
+dnl Check for debug mode
+AC_MSG_CHECKING([debug])
+AC_ARG_ENABLE(debug,
+[ --enable-debug Turn on debugging],
+[case "${enableval}" in
+ yes) debug=true
+ AC_MSG_RESULT(yes)
+ ;;
+ no) debug=false
+ AC_MSG_RESULT(no)
+ ;;
+ *) AC_MSG_RESULT([bad value ${enableval} for --enable-debug])
+ ;;
+esac],
+[debug=false; AC_MSG_RESULT(no)])
+AM_CONDITIONAL(DEBUG, test "$debug" = "true")
+
+if test "$debug" = "true" ; then
+dnl AC_ADD_GCC_CFLAGS([-g -DDEBUG])
+ CFLAGS="-g -DDEBUG"
+ AC_DEFINE(DEBUG)
+else
+dnl AC_ADD_GCC_CFLAGS([-O2 -fexpensive-optimizations -DNDEBUG])
+ CFLAGS="-O3 -DNDEBUG -fomit-frame-pointer"
+ AC_DEFINE(NDEBUG)
+fi
+
+AC_MSG_CHECKING(sstream)
+ if [ test -f /usr/include/sstream || test -f /usr/include/g++/sstream ||
+ test -f /usr/include/g++-2/sstream || test -f /usr/include/g++-3/sstream ]; then
+ AC_DEFINE(HAVE_SSTREAM)
+ AC_MSG_RESULT(yes)
+fi
+AC_MSG_RESULT(no)
+
AC_ADD_GCC_CFLAGS([-Wall])
AC_MSG_CHECKING(whether to enable verbose warnings)
esac ], AC_MSG_RESULT(no)
)
-dnl Check for debug mode
-AC_ARG_ENABLE(debug,
-[ --enable-debug Turn on debugging],
-[case "${enableval}" in
- yes) debug=true
- CFLAGS="$CFLAGS -g"
- ;;
- no) debug=false
- CFLAGS="$CFLAGS -O2"
- ;;
- *) AC_MSG_ERROR(bad value ${enableval} for --enable-debug)
- ;;
-esac],[debug=false])
-AM_CONDITIONAL(DEBUG, test "$debug" = "true")
+AC_MSG_CHECKING(static executables)
+AC_ARG_ENABLE(static,
+[ --enable-static
+ Enable static executables.],
+[ case "$enableval" in
+ yes)
+ AC_MSG_RESULT(yes)
+ AC_ADD_GCC_CFLAGS([--static])
+ ;;
+ *)
+ AC_MSG_RESULT(no)
+ ;;
+ esac ], AC_MSG_RESULT(no)
+)
dnl Set LAM path
AC_ARG_WITH(lam,
AC_MSG_CHECKING([for LAM MPI installation])
for testlamdir in "." $trylamdir /usr/local /usr/local/lam /usr /usr/lam /opt /opt/lam ; do
- if test -x "$testlamdir/bin/hcc" ; then
- LDFLAGS="$LDFLAGS -L$testlamdir/lib"
- CFLAGS="$CFLAGS -I$testlamdir/include"
+ if test -x "$testlamdir/bin/hcp" ; then
+ if test "$testlamdir" != "/usr"; then
+ LDFLAGS="$LDFLAGS -L$testlamdir/lib"
+ CFLAGS="$CFLAGS -I$testlamdir/include"
+ fi
+ CFLAGS="$CFLAGS -I$testlamdir/include/mpi2c++"
lamdir="$testlamdir"
AC_SUBST(lamdir)
mpienable="true"
AC_MSG_RESULT([no])
fi
+
+dnl Set CTN path
+AC_ARG_WITH(ctn,
+[ --with-ctn[=PATH] Set path of CTN DICOM library ],
+[ if test "$withval" != "no" ; then
+ tryctndir=$withval
+ fi ]
+)
+
+if test "$withval" != "no" ; then
+ if test "$prefix" != "NONE" ; then
+ tryctndir="$tryctndir $prefix"
+ fi
+
+ AC_MSG_CHECKING([for CTN DICOM installation])
+ for testctndir in "." $tryctndir /usr/local /usr/local/ctn /usr /usr/ctn /opt /opt/ctn ; do
+ if test -f "$testctndir/lib/libctn.a" ; then
+ if test "$testctndir" != "/usr"; then
+ LDFLAGS="$LDFLAGS -L$testctndir/lib"
+ CFLAGS="$CFLAGS -I$testctndir/include"
+ fi
+ ctndir="$testctndir"
+ ctn="true"
+ AC_DEFINE(HAVE_CTN_DICOM)
+ break
+ fi
+ done
+ AC_MSG_RESULT($ctndir)
+else
+ AC_MSG_RESULT([no])
+fi
+
+
+
AC_MSG_CHECKING([for web access])
dnl Set cgi-bin directory
AC_ARG_WITH(cgibin-dir, [ --with-cgibin-dir=PATH Set path of CGI binaries directory ],
AC_SUBST(X_EXTRA_LIBS)
X_TOOLKIT_LIBS="-lXt"
-X_BASIC_LIBS="-lXext -lX11"
+X_BASIC_LIBS="-lXext -lX11 -lXmu"
dnl Check whether libXt has thread support. Some platforms may have
dnl pthread support in libc, but no thread support in libXt/libX11.
dnl whether X should be supported.
AM_CONDITIONAL(NO_X, test "x$no_x" = "xyes")
-my_includes="$my_includes -I../include -I.."
+my_includes="$my_includes -I../include -I.. -I/usr/local/include"
AC_SUBST(my_includes)
-AC_MSG_CHECKING([interactive graphics])
+LDFLAGS="$LDFLAGS -L/usr/local/lib"
+
+AC_MSG_CHECKING([for X])
if test "$no_x" != "yes" ; then
AC_DEFINE(HAVE_X11)
- AC_DEFINE(HAVE_SGP)
- AM_CONDITIONAL(HAVE_SGP, test 1==1)
- LDFLAGS="$LDFLAGS -L../libezplot -L../libgraph -L/usr/X11R6/lib"
- ctlibs_graphics="$ctlibs_base -lezplot -lgraph $X_BASIC_LIBS $X_TOOLKIT_LIBS"
+ LDFLAGS="$LDFLAGS -L../libctgraphics -L/usr/X11R6/lib"
+ ctlib_graphics="$ctlibs_base -lctgraphics"
AC_MSG_RESULT(yes)
+ ctlib_graphics="$ctlib_graphics $X_BASIC_LIBS $X_TOOLKIT_LIBS"
+ if test "$libgl" = "true" ; then
+ ctlib_graphics="$ctlib_graphics -lwx_gtk_gl -lglut -lGL -lGLU"
+ fi
+ if test "$wxwin" = "true" ; then
+ AC_DEFINE(HAVE_SGP)
+ AM_CONDITIONAL(HAVE_SGP, test 1==1)
+ fi
else
AC_MSG_RESULT(no)
fi
if test "$zlib" = "true" ; then
ctlibs_tools="$ctlibs_tools -lz"
fi
-if test "$g2" = "true" ; then
- ctlibs_tools="$ctlibs_tools -lg2"
+if test "$fftw" = "true" ; then
+ ctlibs_tools="$ctlibs_tools -lrfftw -lfftw"
+fi
+if test "$ctn" = "true"; then
+ ctlibs_tools="$ctlibs_tools -lctn"
+fi
+
+dnl Check for dmalloc
+AC_CHECK_LIB(dmallocxx, main, [dmallocxx=true], [dmallocxx=false])
+AC_MSG_CHECKING([for enable-dmalloc])
+AC_ARG_ENABLE(dmalloc,
+[ --enable-dmalloc Use dmalloc memory allocation],
+[case "${enableval}" in
+ yes) usedmalloc=true
+ AC_MSG_RESULT(yes)
+ ;;
+ no) usedmalloc=false
+ AC_MSG_RESULT(no)
+ ;;
+ *) AC_MSG_RESULT([bad value ${enableval} for --enable-dmalloc])
+ ;;
+esac],
+[usedmalloc=false; AC_MSG_RESULT(no)])
+
+if test "$dmallocxx" = "true" -a "$usedmalloc" = "true" ; then
+ ctlibs_tools="$ctlibs_tools -ldmallocxx"
+ AC_DEFINE(HAVE_DMALLOC)
+ AC_MSG_RESULT(Using dmalloc)
+fi
+
+dnl Check for efence
+AC_CHECK_LIB(efence, main, [efence=true], [efence=false])
+AC_MSG_CHECKING([for enable-efence])
+AC_ARG_ENABLE(efence,
+[ --enable-efence Use ElectricFence memory allocation],
+[case "${enableval}" in
+ yes) useefence=true
+ AC_MSG_RESULT(yes)
+ ;;
+ no) useefence=false
+ AC_MSG_RESULT(no)
+ ;;
+ *) AC_MSG_RESULT([bad value ${enableval} for --enable-efence])
+ ;;
+esac],
+[useefence=false; AC_MSG_RESULT(no)])
+
+if test "$efence" = "true" -a "$useefence" = "true" ; then
+ ctlibs_tools="$ctlibs_tools -lefence"
+ AC_DEFINE(HAVE_EFENCE)
+ AC_MSG_RESULT(Using efence)
fi
-if test "$wx_gtk" = "true" ; then
- ctlibs_tools="$ctlibs_tools -lwx_gtk"
+
+if test "$wxwin" = "true" ; then
+ if test "$wx_gtk" = "true" ; then
+ wxcflags=`$wxconfig --cflags`
+ wxlibs=`$wxconfig --libs`
+ else
+ wxcflags="-D__WXMSW__ -D__WIN32__ -D__GNUWIN32__"
+ wxlibs="-lwx -lglui -ljpeg -lxpm -lzlib -ltiff"
+ fi
+ CFLAGS="$CFLAGS -I../include $wxcflags"
+ ctlib_graphics="$ctlib_graphics $wxlibs"
+ AM_CONDITIONAL(HAVE_WXWINDOWS, test 1==1 )
fi
+AC_SUBST(wxcflags)
+AC_SUBST(wxlibs)
dnl Setting projet libraries and includes
-LDFLAGS="$LDFLAGS -L../libkmath -L../libk -L../libcio -L../libir"
-ctlibs="$ctlibs_base -lir $ctlibs_graphics -lkmath -lk -lcio $ctlibs_tools"
+LDFLAGS="$LDFLAGS -L../libctsupport -L../libctsim"
+ctlibs="$ctlibs_base -lctsim $ctlib_graphics -lctsupport $ctlibs_tools"
AC_SUBST(ctlibs)
if test -n "$lamdir" ; then
- lamprograms="ctrec-lam phm2if-lam phm2rs-lam"
+ lamprograms="ctsimtext-lam"
AC_SUBST(lamprograms)
+ lamdefs="$CFLAGS"
+ AC_SUBST(lamdefs)
fi
-AC_OUTPUT(Makefile libezplot/Makefile src/Makefile libgraph/Makefile libkmath/Makefile Makefile libk/Makefile libir/Makefile libcio/Makefile man/Makefile cgi-bin/ctsim.cgi cgi-bin/Makefile html/simulate.html html/Makefile include/Makefile getopt/Makefile src/sample-ctrec.sh cgi-bin/ctsim.conf)
+CXXFLAGS="$CFLAGS"
+
+AC_OUTPUT(Makefile libctgraphics/Makefile libctsupport/Makefile libctsim/Makefile Makefile man/Makefile doc/Makefile cgi-bin/ctsim.cgi cgi-bin/Makefile html/simulate.html html/Makefile include/Makefile getopt/Makefile tools/sample-ctsim.sh cgi-bin/ctsim.conf tools/Makefile src/Makefile helical/Makefile helical/sample-helical.sh)