r549: no message
[ctsim.git] / doc / ctsim.tex
index ee86e85b8fed053360a443f2650b989fe7135167..0b656acbded42db63937e409b77589e1c0e7b750 100644 (file)
@@ -1,4 +1,4 @@
-\documentclass[11pt]{report}%
+\documentclass[letterpaper,11pt]{report}%
 \usepackage{graphicx}
 \usepackage{texhelp}
 \usepackage{fancyhea}
@@ -6,48 +6,57 @@
 \usepackage{mytitle}
 \usepackage{verbatim}
 \usepackage{makeidx}
-\usepackage{times}
+%\usepackage{times}
 \usepackage{hyperref}
 \input{psbox.tex}
 
+\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
+\hyphenation{poly-gon-al}
+
 \newcommand{\ctsim}{\texttt{CTSim}}
 \newcommand{\ctsimtext}{\texttt{CTSimText}}
 \newcommand{\usage}{\textbf{Usage}\par}
 
 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
 \newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
-\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}%
+\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
 \newcommand{\indexit}[1]{#1\index{#1}}%
 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
+
+\newcommand{\manvernum}[0]{0.6}
+\newcommand{\manver}[0]{v\manvernum}
+\newcommand{\mandate}[0]{February 16, 2001}
+\newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
+\newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
+\newcommand{\ctsimvernum}[0]{3.0.0}
+\newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
+\newcommand{\ctsimheadtitle}{\ctsimver\ Manual}
+
+\latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
+
 \parskip=10pt%
 \parindent=0pt%
 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
-\winhelpignore{\title{Manual for CTSim 3.0}%
+\title{CTSim 3.0 User Manual}%
 \author{Kevin Rosenberg, M.D.}%
-\date{January 2001}%
-}%
-\winhelponly{\title{Manual for CTSim 3.0}%
-\author{by Kevin Rosenberg, M.D.\\$$\image{3cm;3cm}{logo-huge.bmp}$$}%
-}%
 \makeindex%
-\begin{document}%
-\maketitle%
-\pagestyle{fancyplain}%
-\bibliographystyle{plain}%
-\pagenumbering{roman}%
-
-\setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
-\tableofcontents%
+
+\begin{document}
+\textheight=9in
+\textwidth=6.5in
+\evensidemargin=0in
+\oddsidemargin=0in
+
+\maketitle
+\pagestyle{fancyplain}
+\pagenumbering{roman}
 
 \chapter*{Copyright notice}%
-\setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
+\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
+\ctsimfooter
 
 Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
 
-Specified file
-
 Permission to use, copy, modify, and distribute this software and its
 documentation for any purpose is hereby granted without fee, provided that the
 above copyright notice, author statement and this permission notice appear in
@@ -64,31 +73,54 @@ WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
 PERFORMANCE OF THIS SOFTWARE.
 
-\chapter{Introduction}\label{introduction}%
-\pagenumbering{arabic}%
-\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
 
-\image{3cm;3cm}{logo-huge.eps}
-Computed Tomography is a technique for estimating the interior of an object
-from measurement of radiation collected around the object. This radiation
-can be either projected through or emitted from the object.
-\rtfsp\ctsim\ simulates the process of projecting X-rays through a phantom object.
-\rtfsp\ctsim\ can then reconstruct the interior of the object from the projections
-collected around the phantom object.
+\chapter*{Acknowledgements}
+\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
+\setfooter{\thepage}{}{}{}{\manver}{\thepage}%
 
-The \ctsim\ package has two executable files: the graphical \helprefn{ctsim}{ctsim} and text \helprefn{ctsimtext}{ctsimtext} programs.
+\textbf{Ian Kay, Ph.D.}\\
+Special thanks to Dr. Kay for contributing portions to this manual. Dr. Kay has assisted the
+development of \ctsim\ with bug reports and fixes.
 
-\include{ctsim-concepts}
+\textbf{Gabor T. Herman, Ph.D.}\\
+Dr. Herman's publications on computed tomography inspired me to
+create the initial version \ctsim\ in 1983. Dr. Herman
+has graciously permitted use of his
+copyrighted head phantom for use in \ctsim.
 
-\include{ctsim-install}
 
-\include{ctsim-gui}
+\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
+\ctsimfooter
+\parskip=2pt
+\tableofcontents%
 
-\include{ctsim-textui}
+\parskip=10pt
+\chapter{Introduction}\label{IDH_INTRODUCTION}
+\pagenumbering{arabic}
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
+\ctsimfooter
 
-\include{ctsim-web}
 
+\centerline{\image{3cm;3cm}{logo-huge.eps}}
+Computed tomography is a technique for estimating the interior of an
+object from measurements of radiation collected around the object. This
+radiation can be either projected through or emitted from the
+object. \ctsim\ simulates the process of projecting X-rays
+through a phantom object. \ctsim\ can then reconstruct the
+interior of the object from those projections. \ctsim\ integrates
+numerous visualization and analytic tools.
+
+This manual begins with an introduction into the concepts of
+\ctsim. Next, the graphical, command-line, and web shells are
+presented. Finally, the installation of \ctsim\ is discussed.
+
+I hope that you enjoy \ctsim!
+
+\include{ctsim-concepts}
+\include{ctsim-gui}
+\include{ctsim-textui}
+\include{ctsim-web}
+\include{ctsim-install}
 \include{ctsim-appendix}
 
 \newpage
@@ -96,12 +128,13 @@ The \ctsim\ package has two executable files: the graphical \helprefn{ctsim}{cts
 \bibliographystyle{plain}
 \bibliography{ctsim}
 \addcontentsline{toc}{chapter}{Bibliography}
-\setheader{{\it REFERENCES}}{}{}{}{}{{\it REFERENCES}}%
-\setfooter{\thepage}{}{}{}{}{\thepage}%
+\setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
+\ctsimfooter
 
+\newpage
 \addcontentsline{toc}{chapter}{Index}
-\setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}} %
-\setfooter{\thepage}{}{}{}{}{\thepage} %
-\printindex %
+\setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
+\ctsimfooter
+\printindex
 
-\end{document}%
+\end{document}