-\documentclass[11pt,texhelp]{report}
-\usepackage[dvips]{graphics}
-
-\begin{document}
-
-\newcommand{\ctsim}{{\tt ctsim}}
-
-
-\title{CTSim - An Open-Source Computed Tomography Simulator}
-\author{Kevin Rosenberg, MD\footnote{San Juan Regional Medical Center, 801 W. Maple, Farmington NM 87401. Phone: (505) 599-6103. E-mail: kevin@rosenberg.net}}
-\date{September 2000}
-\maketitle
-
-\chapter{Introduction}
-Computed Tomography is the process of acquiring X-ray data (projections)
-though an object and then using mathematics to reconstruct the interior
-of that object.
-
-\chapter{Installation}
-\subsection{Requirements}
-\begin{itemize}
- \item Running CTSim
- \begin{itemize}
- \item Apache or other CGI compatible web server
-
- \item Perl (version 4.0 or higher)
-
- \item A client web browser than can display PNG files. Most
- current web browswer do support PNG.
-
- \end{itemize}
- \item Building CTSim
- \begin{itemize}
- \item zlib Library (optional)
- \par Used for PNG file export.
-
- \item libpng Library (optional)
- \par Used for PNG file export.
- \par www.libpng.org
-
- \item FFTW library (optional)
- \par Used for frequency-based filtering
- \par www.fftw.org
-
- \item dmalloc library (optional)
- \par Used for debugging memory allocation
- \par www.dmalloc.com
-
- \item wxWindows library (optional) \par Used for
- platform-independent graphical interface. The graphical-shell
- program {\tt ctsim} requires this library. \par www.wxwindows.org
-
- \end{itemize}
-\end{itemize}
-
-\subsection{Download}
-\subsection{Install Binary Distribution}
-\subsection{Build From Sources}
-
-\chapter{The Programs}
-
-\section{ctsim - The Graphical User Interface}
-\ctsim\ is the graphical shell for the CTSim project. It is
-written using the wxLibrary for cross-platform compatibility with GTK,
-Motif, and Microsoft Windows.
-
-\ctsim\ incorporates most of the capabilities of the CTSim
-project. There are still functions that are only available to the
-command line tools.
-
-\subsection{Usage}
-ctsim [OPTIONS] [files to open...]
-
-\ctsim\ can open projection files and image files.
-
-\section{The Web Browser CGI Interface}
-\subsection{Overview}
-The CGI program {\tt ctsim.cgi} takes projections of a standard
-phantom object, performs reconstruction, and then compares the
-rasterized phantom object with the reconstruction. The comparison is
-performed both visually by an image subtraction as well as by standard
-statistics as described by Herman\cite{HERMAN80}.
-
-\section{tools - The Command Line Interface}
-\subsection{phm2pj}
-Converts a phantom object to a set of projections
-
-{\tt phm2pj} simulates the process of collection of X-Ray projection data
-such as collected by a CT scanner.
-
-\subsection{pjrec}
-
-\subsection{phm2if}
-
-\section{Function Parameters}
-\subsection{Collection Projections}
-\begin{itemize}
- \item Phantom
- Select which phantom to collect projections
-
- \item Geometry
- \begin{itemize}
- \item Parallel
- \item Equiangular
- \item Equilinear
- \end{itemize}
-
- \item Number of Detectors
-
- \item Number of Views
-
- \item Number of Samples Per Detector
-
-\end{itemize}
-
-\subsection{Reconstruct Image From Projections}
-\begin{itemize}
- \item Filter
- Selects which filter to apply to each projection. To
- properly reconstruct an image, the should be multiplied
- by the absolute value of distance from zero frequency.
-
- \item Filter Parameter
- \item Filter Method
- \item Filter Generation
- \item Interpolation
- \item Backprojection
- \item Zeropad
- \item Preinterpolation Factor
-\end{itemize}
-
-\bibliographystyle{abbrv}
-\bibliography{yes}
-
-
-\end{document}
+\documentclass[letterpaper,11pt]{report}
+\usepackage{graphicx}
+\usepackage{texhelp}
+\usepackage{fancyhea}
+\usepackage{mysober}
+\usepackage{mytitle}
+\usepackage{verbatim}
+\usepackage{makeidx}
+%\usepackage{times}
+\usepackage{hyperref}
+\input{psbox.tex}
+
+\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-algorithms,ctsim-sgp}}
+\hyphenation{poly-gon-al multi-thread-ing}
+
+\newcommand{\ctsim}{\texttt{CTSim}}
+\newcommand{\ctsimtext}{\texttt{CTSimText}}
+\newcommand{\usage}{\textbf{Usage}\par}
+
+\newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
+\newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
+\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
+\newcommand{\indexit}[1]{#1\index{#1}}%
+\newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
+
+\newcommand{\manvernum}[0]{1.0}
+\newcommand{\manver}[0]{v\manvernum}
+\newcommand{\mandate}[0]{May 1, 2002}
+\newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
+\newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
+\newcommand{\ctsimvernum}[0]{3.5.0}
+\newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
+\newcommand{\ctsimheadtitle}{\ctsimver\ Manual}
+
+\latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
+
+\parskip=10pt%
+\parindent=0pt%
+%\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
+\title{CTSim 3.5 User Manual}%
+\author{Kevin M. Rosenberg, M.D.}%
+\makeindex%
+
+\textheight=9in
+\textwidth=6.0in
+\evensidemargin=0in
+\oddsidemargin=0in
+
+\begin{document}
+\maketitle
+\pagestyle{fancyplain}
+\pagenumbering{roman}
+
+\chapter*{Copyright notice}%
+\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
+\ctsimfooter
+
+Copyright (c) 1983-2002 Kevin M. Rosenberg, M.D.
+
+Permission to use, copy, modify, and distribute this software and its
+documentation for any purpose is hereby granted without fee, provided that the
+above copyright notice, author statement and this permission notice appear in
+all copies of this software and related documentation.
+
+THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
+IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
+MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
+
+IN NO EVENT SHALL KEVIN M. ROSENBERG BE LIABLE FOR ANY
+SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
+ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
+WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
+OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
+PERFORMANCE OF THIS SOFTWARE.
+
+
+\chapter*{Acknowledgements}
+\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
+\setfooter{\thepage}{}{}{}{\manver}{\thepage}%
+
+\textbf{Ian Kay, Ph.D.}\\ Special thanks to Dr. Kay for contributing
+portions to this manual. Dr. Kay has assisted the development of
+\ctsim\ with the addition of helical scanning, bug reports, and paches.
+
+\textbf{Gabor T. Herman, Ph.D.}\\ Dr. Herman's publications on
+computed tomography inspired the initial version \ctsim\ in
+1983. Dr. Herman has graciously permitted use of his copyrighted head
+phantom for use in \ctsim.
+
+
+\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
+\ctsimfooter
+\parskip=2pt
+\tableofcontents%
+
+\parskip=10pt
+\chapter{Introduction}\label{IDH_INTRODUCTION}
+\pagenumbering{arabic}
+\setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
+\ctsimfooter
+
+
+\centerline{\image{3cm;3cm}{logo.eps}}
+Computed tomography is a technique for estimating the interior of an
+object from measurements of radiation collected around the object. This
+radiation can be either projected through or emitted from the
+object. \ctsim\ simulates the process of projecting X-rays
+through a phantom object. \ctsim\ can then reconstruct the
+interior of the object from those projections. \ctsim\ integrates
+numerous visualization and analytic tools.
+
+This manual begins with an introduction into the concepts of
+\ctsim. Next, the graphical, command-line, and web shells are
+presented. Finally, the installation of \ctsim\ is discussed.
+
+I hope that you enjoy \ctsim!
+
+\include{ctsim-concepts}
+\include{ctsim-gui}
+\include{ctsim-textui}
+\include{ctsim-web}
+\include{ctsim-install}
+\appendix
+\include{ctsim-algorithms}
+\include{ctsim-sgp}
+
+\newpage
+
+\bibliographystyle{plain}
+\bibliography{ctsim}
+\addcontentsline{toc}{chapter}{Bibliography}
+\setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
+\ctsimfooter
+
+\newpage
+\addcontentsline{toc}{chapter}{Index}
+\setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
+\ctsimfooter
+\printindex
+
+\end{document}
projects / ctsim.git / blobdiff