Add regression verification script

[ctsim.git] / doc / ctsim.tex

diff --git a/doc/ctsim.tex b/doc/ctsim.tex
index 6b4d73ffa3721f624fc326673398df72ad72c54d..2a5738c70d103da569614dca2276a30b70aa46f3 100644 (file)
--- a/doc/ctsim.tex
+++ b/doc/ctsim.tex
@@ -1,4 +1,4 @@
-\documentclass[letterpaper,12pt]{report}%
+\documentclass[letterpaper,11pt]{report}
 \usepackage{graphicx}
 \usepackage{texhelp}
 \usepackage{fancyhea}
@@ -10,8 +10,8 @@
 \usepackage{hyperref}
 \input{psbox.tex}
 
-\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
-\hyphenation{poly-gon-al}
+\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-algorithms,ctsim-sgp}}
+\hyphenation{poly-gon-al multi-thread-ing}
 
 \newcommand{\ctsim}{\texttt{CTSim}}
 \newcommand{\ctsimtext}{\texttt{CTSimText}}
@@ -23,47 +23,39 @@
 \newcommand{\indexit}[1]{#1\index{#1}}%
 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
 
-\newcommand{\manvernum}[0]{0.4}
+\newcommand{\manvernum}[0]{1.0}
 \newcommand{\manver}[0]{v\manvernum}
-\newcommand{\mandate}[0]{February 14, 2001}
+\newcommand{\mandate}[0]{May 1, 2002}
 \newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
 \newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
-\newcommand{\ctsimvernum}[0]{3.0.0beta2}
+\newcommand{\ctsimvernum}[0]{3.5.0}
 \newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
-\newcommand{\ctsimheadtitle}{\ctsimver Manual}
+\newcommand{\ctsimheadtitle}{\ctsimver\ Manual}
 
 \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
 
 \parskip=10pt%
 \parindent=0pt%
 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
-\title{CTSim 3.0 User Manual}%
-\author{Kevin Rosenberg, M.D.}%
-\date{February 9, 2001}%
+\title{CTSim 3.5 User Manual}%
+\author{Kevin M. Rosenberg, M.D.}%
 \makeindex%
 
-\begin{document}
 \textheight=9in
-\textwidth=6.5in
-\topmargin=-0.25in
+\textwidth=6.0in
 \evensidemargin=0in
 \oddsidemargin=0in
 
+\begin{document}
 \maketitle
 \pagestyle{fancyplain}
 \pagenumbering{roman}
 
-\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
-\ctsimfooter
-\parskip=2pt
-\tableofcontents%
-
-\parskip=10pt
 \chapter*{Copyright notice}%
 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
-\setfooter{\thepage}{}{}{}{\manver}{\thepage}%
+\ctsimfooter
 
-Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
+Copyright (c) 1983-2002 Kevin M. Rosenberg, M.D.
 
 Permission to use, copy, modify, and distribute this software and its
 documentation for any purpose is hereby granted without fee, provided that the
@@ -74,22 +66,43 @@ THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
 IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
 MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
 
-IN NO EVENT SHALL KEVIN ROSENBERG BE LIABLE FOR ANY
+IN NO EVENT SHALL KEVIN M. ROSENBERG BE LIABLE FOR ANY
 SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
 ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
 WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
 PERFORMANCE OF THIS SOFTWARE.
 
-\chapter{Introduction}\label{introduction}
+
+\chapter*{Acknowledgements}
+\setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
+\setfooter{\thepage}{}{}{}{\manver}{\thepage}%
+
+\textbf{Ian Kay, Ph.D.}\\ Special thanks to Dr. Kay for contributing
+portions to this manual. Dr. Kay has assisted the development of
+\ctsim\ with the addition of helical scanning, bug reports, and paches.
+
+\textbf{Gabor T. Herman, Ph.D.}\\ Dr. Herman's publications on
+computed tomography inspired the initial version \ctsim\ in
+1983. Dr. Herman has graciously permitted use of his copyrighted head
+phantom for use in \ctsim.
+
+
+\setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
+\ctsimfooter
+\parskip=2pt
+\tableofcontents%
+
+\parskip=10pt
+\chapter{Introduction}\label{IDH_INTRODUCTION}
 \pagenumbering{arabic}
 \setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
 \ctsimfooter
 
 
-\centerline{\image{3cm;3cm}{logo-huge.eps}}
-Computed Tomography is a technique for estimating the interior of an
-object from measurement of radiation collected around the object. This
+\centerline{\image{3cm;3cm}{logo.eps}}
+Computed tomography is a technique for estimating the interior of an
+object from measurements of radiation collected around the object. This
 radiation can be either projected through or emitted from the
 object. \ctsim\ simulates the process of projecting X-rays
 through a phantom object. \ctsim\ can then reconstruct the
@@ -98,7 +111,7 @@ numerous visualization and analytic tools.
 
 This manual begins with an introduction into the concepts of
 \ctsim. Next, the graphical, command-line, and web shells are
-presented. Finally, the installation of \ctsim is discussed.
+presented. Finally, the installation of \ctsim\ is discussed.
 
 I hope that you enjoy \ctsim!
 
@@ -107,7 +120,9 @@ I hope that you enjoy \ctsim!
 \include{ctsim-textui}
 \include{ctsim-web}
 \include{ctsim-install}
-\include{ctsim-appendix}
+\appendix
+\include{ctsim-algorithms}
+\include{ctsim-sgp}
 
 \newpage
 
@@ -117,6 +132,7 @@ I hope that you enjoy \ctsim!
 \setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
 \ctsimfooter
 
+\newpage
 \addcontentsline{toc}{chapter}{Index}
 \setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
 \ctsimfooter