r520: no message
[ctsim.git] / doc / ctsim.tex
index 0f53285a8d13035ade154c5e205a1d9b42d29fbb..73deaf43dbbce8090180e9cdebb2bf174a68aff3 100644 (file)
@@ -1,45 +1,49 @@
 \documentclass[11pt]{report}%
 \documentclass[11pt]{report}%
-%\input{psbox.tex}
 \usepackage{graphicx}
 \usepackage{texhelp}
 \usepackage{graphicx}
 \usepackage{texhelp}
-\usepackage{fancyheadings}
-\usepackage{mysober}
+\usepackage{fancyhea}
+%\usepackage{mysober}
 \usepackage{mytitle}
 \usepackage{mytitle}
-\usepackage{verbatim}
+%\usepackage{verbatim}
 \usepackage{makeidx}
 \usepackage{makeidx}
-\usepackage{times}
+%\usepackage{times}
 \usepackage{hyperref}
 \usepackage{hyperref}
+\input{psbox.tex}
 
 
-\newcommand{\ctsim}{{\tt CTSim}}
-\newcommand{\ctsimtext}{{\tt CTSimText}}
-\newcommand{\usage}{{\bf Usage}{\par}}
+\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
+\hyphenation{poly-gon-al}
+
+\newcommand{\ctsim}{\texttt{CTSim}}
+\newcommand{\ctsimtext}{\texttt{CTSimText}}
+\newcommand{\usage}{\textbf{Usage}\par}
 
 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
 \newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
 
 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
 \newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
-\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}%
+\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
 \newcommand{\indexit}[1]{#1\index{#1}}%
 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
 \newcommand{\indexit}[1]{#1\index{#1}}%
 \newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
+
+\latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}%
+
 \parskip=10pt%
 \parindent=0pt%
 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
 \parskip=10pt%
 \parindent=0pt%
 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
-\winhelpignore{\title{Manual for CTSim 3.0}%
+\title{CTSim 3.0 User Manual}%
 \author{Kevin Rosenberg, M.D.}%
 \author{Kevin Rosenberg, M.D.}%
-\date{January 2001}%
-}%
-\winhelponly{\title{Manual for CTSim 3.0}%
-\author{by Kevin Rosenberg, M.D.\\$$\image{3cm;3cm}{logo-huge.bmp}$$}%
-}%
+\date{February 9, 2001}%
 \makeindex%
 \makeindex%
+
 \begin{document}%
 \maketitle%
 \pagestyle{fancyplain}%
 \begin{document}%
 \maketitle%
 \pagestyle{fancyplain}%
-\bibliographystyle{plain}%
 \pagenumbering{roman}%
 
 \setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 \pagenumbering{roman}%
 
 \setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
+\parskip=2pt
 \tableofcontents%
 
 \tableofcontents%
 
+\parskip=10pt
 \chapter*{Copyright notice}%
 \setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 \chapter*{Copyright notice}%
 \setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
@@ -67,20 +71,24 @@ PERFORMANCE OF THIS SOFTWARE.
 \setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 
 \setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
 \setfooter{\thepage}{}{}{}{}{\thepage}%
 
-\winhelponly{$$\image{3cm;3cm}{logo-huge}$$}%
-\htmlonly{$$\image{3cm;3cm}{logo-huge.gif}$$}%
-Computed Tomography is a technique for estimating the interior of an object 
-from measurement of radiation collected around the object. This radiation 
+$$\image{3cm;3cm}{logo-huge.eps}$$
+Computed Tomography is a technique for estimating the interior of an object
+from measurement of radiation collected around the object. This radiation
 can be either projected through or emitted from the object.
 \rtfsp\ctsim\ simulates the process of projecting X-rays through a phantom object.
 \rtfsp\ctsim\ can then reconstruct the interior of the object from the projections
 collected around the phantom object.
 
 can be either projected through or emitted from the object.
 \rtfsp\ctsim\ simulates the process of projecting X-rays through a phantom object.
 \rtfsp\ctsim\ can then reconstruct the interior of the object from the projections
 collected around the phantom object.
 
-The \ctsim\ package has two executable files: the graphical \helprefn{ctsim}{ctsim} and text \helprefn{ctsimtext}{ctsimtext} programs.
+This manual begins with an introduction into the concepts of
+\rtfsp\ctsim. Then, the graphical shell, \helprefn{ctsim}{ctsim},
+is documented followed the the command-line shell,
+\helprefn{ctsimtext}{ctsimtext}. Finally, the web-based
+\helprefn{interface}{webinterface} is discussed followed by
+\helprefn{installation}{installation} instructions.
 
 
-\include{ctsim-concepts}
+I hope that you enjoy \ctsim!
 
 
-\include{ctsim-install}
+\include{ctsim-concepts}
 
 \include{ctsim-gui}
 
 
 \include{ctsim-gui}
 
@@ -88,6 +96,8 @@ The \ctsim\ package has two executable files: the graphical \helprefn{ctsim}{cts
 
 \include{ctsim-web}
 
 
 \include{ctsim-web}
 
+\include{ctsim-install}
+
 \include{ctsim-appendix}
 
 \newpage
 \include{ctsim-appendix}
 
 \newpage
@@ -104,4 +114,3 @@ The \ctsim\ package has two executable files: the graphical \helprefn{ctsim}{cts
 \printindex %
 
 \end{document}%
 \printindex %
 
 \end{document}%