-\documentclass[11pt,texhelp]{report}
-\usepackage[dvips]{graphics}
+\documentclass[11pt]{report}%
+\usepackage{graphicx}
+\usepackage{texhelp}
+\usepackage{fancyhea}
+%\usepackage{mysober}
+\usepackage{mytitle}
+%\usepackage{verbatim}
+\usepackage{makeidx}
+%\usepackage{times}
+\usepackage{hyperref}
+\input{psbox.tex}
+
+\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
+\hyphenation{poly-gon-al}
+
+\newcommand{\ctsim}{\texttt{CTSim}}
+\newcommand{\ctsimtext}{\texttt{CTSimText}}
+\newcommand{\usage}{\textbf{Usage}\par}
+
+\newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
+\newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
+\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
+\newcommand{\indexit}[1]{#1\index{#1}}%
+\newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
+
+\latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}%
+
+\parskip=10pt%
+\parindent=0pt%
+%\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
+\title{CTSim 3.0 User Manual}%
+\author{Kevin Rosenberg, M.D.}%
+\date{February 9, 2001}%
+\makeindex%
+
+\begin{document}%
+\maketitle%
+\pagestyle{fancyplain}%
+\pagenumbering{roman}%
+
+\setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+\parskip=2pt
+\tableofcontents%
+
+\parskip=10pt
+\chapter*{Copyright notice}%
+\setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+
+Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
+
+Permission to use, copy, modify, and distribute this software and its
+documentation for any purpose is hereby granted without fee, provided that the
+above copyright notice, author statement and this permission notice appear in
+all copies of this software and related documentation.
+
+THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
+IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
+MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
+
+IN NO EVENT SHALL KEVIN ROSENBERG BE LIABLE FOR ANY
+SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
+ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
+WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
+OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
+PERFORMANCE OF THIS SOFTWARE.
+
+\chapter{Introduction}\label{introduction}%
+\pagenumbering{arabic}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+
+$$\image{3cm;3cm}{logo-huge.eps}$$
+Computed Tomography is a technique for estimating the interior of an object
+from measurement of radiation collected around the object. This radiation
+can be either projected through or emitted from the object.
+\rtfsp\ctsim\ simulates the process of projecting X-rays through a phantom object.
+\rtfsp\ctsim\ can then reconstruct the interior of the object from the projections
+collected around the phantom object.
+
+This manual begins with an introduction into the concepts of
+\rtfsp\ctsim. Then, the graphical shell, \helprefn{ctsim}{ctsim},
+is documented followed the the command-line shell,
+\helprefn{ctsimtext}{ctsimtext}. Finally, the web-based
+\helprefn{interface}{webinterface} is discussed followed by
+\helprefn{installation}{installation} instructions.
+
+I hope that you enjoy \ctsim!
+
+\include{ctsim-concepts}
+
+\include{ctsim-gui}
+
+\include{ctsim-textui}
+
+\include{ctsim-web}
+
+\include{ctsim-install}
+
+\include{ctsim-appendix}
+
+\newpage
+
+\bibliographystyle{plain}
+\bibliography{ctsim}
+\addcontentsline{toc}{chapter}{Bibliography}
+\setheader{{\it REFERENCES}}{}{}{}{}{{\it REFERENCES}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
-\begin{document}
+\addcontentsline{toc}{chapter}{Index}
+\setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}} %
+\setfooter{\thepage}{}{}{}{}{\thepage} %
+\printindex %
-\newcommand{\ctsim}{{\tt ctsim}}
-
-
-\title{CTSim - An Open-Source Computed Tomography Simulator}
-\author{Kevin Rosenberg, MD\footnote{San Juan Regional Medical Center, 801 W. Maple, Farmington NM 87401. Phone: (505) 599-6103. E-mail: kevin@rosenberg.net}}
-\date{September 2000}
-\maketitle
-
-\chapter{Introduction}
-Computed Tomography is the process of acquiring X-ray data (projections)
-though an object and then using mathematics to reconstruct the interior
-of that object.
-
-\chapter{Installation}
-\subsection{Requirements}
-\begin{itemize}
- \item Running CTSim
- \begin{itemize}
- \item Apache or other CGI compatible web server
-
- \item Perl (version 4.0 or higher)
-
- \item A client web browser than can display PNG files. Most
- current web browswer do support PNG.
-
- \end{itemize}
- \item Building CTSim
- \begin{itemize}
- \item zlib Library (optional)
- \par Used for PNG file export.
-
- \item libpng Library (optional)
- \par Used for PNG file export.
- \par www.libpng.org
-
- \item FFTW library (optional)
- \par Used for frequency-based filtering
- \par www.fftw.org
-
- \item dmalloc library (optional)
- \par Used for debugging memory allocation
- \par www.dmalloc.com
-
- \item wxWindows library (optional) \par Used for
- platform-independent graphical interface. The graphical-shell
- program {\tt ctsim} requires this library. \par www.wxwindows.org
-
- \end{itemize}
-\end{itemize}
-
-\subsection{Download}
-\subsection{Install Binary Distribution}
-\subsection{Build From Sources}
-
-\chapter{The Programs}
-
-\section{ctsim - The Graphical User Interface}
-\ctsim\ is the graphical shell for the CTSim project. It is
-written using the wxLibrary for cross-platform compatibility with GTK,
-Motif, and Microsoft Windows.
-
-\ctsim\ incorporates most of the capabilities of the CTSim
-project. There are still functions that are only available to the
-command line tools.
-
-\subsection{Usage}
-ctsim [OPTIONS] [files to open...]
-
-\ctsim\ can open projection files and image files.
-
-\section{The Web Browser CGI Interface}
-\subsection{Overview}
-The CGI program {\tt ctsim.cgi} takes projections of a standard
-phantom object, performs reconstruction, and then compares the
-rasterized phantom object with the reconstruction. The comparison is
-performed both visually by an image subtraction as well as by standard
-statistics as described by Herman\cite{HERMAN80}.
-
-\section{tools - The Command Line Interface}
-\subsection{phm2pj}
-Converts a phantom object to a set of projections
-
-{\tt phm2pj} simulates the process of collection of X-Ray projection data
-such as collected by a CT scanner.
-
-\subsection{pjrec}
-
-\subsection{phm2if}
-
-\section{Function Parameters}
-\subsection{Collection Projections}
-\begin{itemize}
- \item Phantom
- Select which phantom to collect projections
-
- \item Geometry
- \begin{itemize}
- \item Parallel
- \item Equiangular
- \item Equilinear
- \end{itemize}
-
- \item Number of Detectors
-
- \item Number of Views
-
- \item Number of Samples Per Detector
-
-\end{itemize}
-
-\subsection{Reconstruct Image From Projections}
-\begin{itemize}
- \item Filter
- Selects which filter to apply to each projection. To
- properly reconstruct an image, the should be multiplied
- by the absolute value of distance from zero frequency.
-
- \item Filter Parameter
- \item Filter Method
- \item Filter Generation
- \item Interpolation
- \item Backprojection
- \item Zeropad
- \item Preinterpolation Factor
-\end{itemize}
-
-\bibliographystyle{abbrv}
-\bibliography{yes}
-
-
-\end{document}
+\end{document}%
projects / ctsim.git / blobdiff