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[ctsim.git] / doc / ctsim.tex

diff --git a/doc/ctsim.tex b/doc/ctsim.tex
index d4207ff789112fa74eb72c666c7c4ec2b954ea27..73deaf43dbbce8090180e9cdebb2bf174a68aff3 100644 (file)
--- a/doc/ctsim.tex
+++ b/doc/ctsim.tex
@@ -1,20 +1,116 @@
-\documentstyle[a4,texhelp]{report} 
-\title{CTSim - An Open-Source Computed Tomography Simulator} 
-\author{Kevin Rosenberg} 
-\date{July 2000} 
-\begin{document} 
-\maketitle 
-\chapter{Introduction} 
-Welcome to CT.
-\section{Theory} 
-Theory of CT.
-\chapter{The Programs}
-\centerline{This is a centered line}
-\begin{center}
-This is a 
-centered paragraph.
-\end{center}
-
-{\bf This is in bold font}
-
-\end{document} 
+\documentclass[11pt]{report}%
+\usepackage{graphicx}
+\usepackage{texhelp}
+\usepackage{fancyhea}
+%\usepackage{mysober}
+\usepackage{mytitle}
+%\usepackage{verbatim}
+\usepackage{makeidx}
+%\usepackage{times}
+\usepackage{hyperref}
+\input{psbox.tex}
+
+\latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
+\hyphenation{poly-gon-al}
+
+\newcommand{\ctsim}{\texttt{CTSim}}
+\newcommand{\ctsimtext}{\texttt{CTSimText}}
+\newcommand{\usage}{\textbf{Usage}\par}
+
+\newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
+\newcommand{\commandrefn}[2]{\helprefn{{\tt $\backslash$#1}}{#2}\index{#1}}%
+\newcommand{\commandpageref}[2]{\latexignore{\helprefn{{\tt $\backslash$#1}}{#2}}\latexonly{{\tt $\backslash$#1} {\it page \pageref{#2}}}\index{#1}}
+\newcommand{\indexit}[1]{#1\index{#1}}%
+\newcommand{\inioption}[1]{{\bf {\tt #1}}\index{#1}}%
+
+\latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}%
+
+\parskip=10pt%
+\parindent=0pt%
+%\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
+\title{CTSim 3.0 User Manual}%
+\author{Kevin Rosenberg, M.D.}%
+\date{February 9, 2001}%
+\makeindex%
+
+\begin{document}%
+\maketitle%
+\pagestyle{fancyplain}%
+\pagenumbering{roman}%
+
+\setheader{{\it CONTENTS}}{}{}{}{}{{\it CONTENTS}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+\parskip=2pt
+\tableofcontents%
+
+\parskip=10pt
+\chapter*{Copyright notice}%
+\setheader{{\it COPYRIGHT}}{}{}{}{}{{\it COPYRIGHT}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+
+Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
+
+Permission to use, copy, modify, and distribute this software and its
+documentation for any purpose is hereby granted without fee, provided that the
+above copyright notice, author statement and this permission notice appear in
+all copies of this software and related documentation.
+
+THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
+IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
+MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
+
+IN NO EVENT SHALL KEVIN ROSENBERG BE LIABLE FOR ANY
+SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
+ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
+WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
+OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
+PERFORMANCE OF THIS SOFTWARE.
+
+\chapter{Introduction}\label{introduction}%
+\pagenumbering{arabic}%
+\setheader{{\it CHAPTER \thechapter}}{}{}{}{}{{\it CHAPTER \thechapter}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+
+$$\image{3cm;3cm}{logo-huge.eps}$$
+Computed Tomography is a technique for estimating the interior of an object
+from measurement of radiation collected around the object. This radiation
+can be either projected through or emitted from the object.
+\rtfsp\ctsim\ simulates the process of projecting X-rays through a phantom object.
+\rtfsp\ctsim\ can then reconstruct the interior of the object from the projections
+collected around the phantom object.
+
+This manual begins with an introduction into the concepts of
+\rtfsp\ctsim. Then, the graphical shell, \helprefn{ctsim}{ctsim},
+is documented followed the the command-line shell,
+\helprefn{ctsimtext}{ctsimtext}. Finally, the web-based
+\helprefn{interface}{webinterface} is discussed followed by
+\helprefn{installation}{installation} instructions.
+
+I hope that you enjoy \ctsim!
+
+\include{ctsim-concepts}
+
+\include{ctsim-gui}
+
+\include{ctsim-textui}
+
+\include{ctsim-web}
+
+\include{ctsim-install}
+
+\include{ctsim-appendix}
+
+\newpage
+
+\bibliographystyle{plain}
+\bibliography{ctsim}
+\addcontentsline{toc}{chapter}{Bibliography}
+\setheader{{\it REFERENCES}}{}{}{}{}{{\it REFERENCES}}%
+\setfooter{\thepage}{}{}{}{}{\thepage}%
+
+\addcontentsline{toc}{chapter}{Index}
+\setheader{{\it INDEX}}{}{}{}{}{{\it INDEX}} %
+\setfooter{\thepage}{}{}{}{}{\thepage} %
+\printindex %
+
+\end{document}%