/*****************************************************************************
** FILE IDENTIFICATION
**
-** Name: projections.cpp Projection data classes
+** Name: projections.cpp Projection data classes
** Programmer: Kevin Rosenberg
** Date Started: Aug 84
**
** This is part of the CTSim program
-** Copyright (c) 1983-2001 Kevin Rosenberg
-**
-** $Id: projections.cpp,v 1.75 2001/09/24 11:20:08 kevin Exp $
+** Copyright (c) 1983-2009 Kevin Rosenberg
**
** This program is free software; you can redistribute it and/or modify
** it under the terms of the GNU General Public License (version 2) as
******************************************************************************/
#include "ct.h"
+#include <ctime>
+#include "interpolator.h"
const kuint16 Projections::m_signature = ('P'*256 + 'J');
const int Projections::POLAR_INTERP_BILINEAR = 1;
const int Projections::POLAR_INTERP_BICUBIC = 2;
-const char* const Projections::s_aszInterpName[] =
+const char* const Projections::s_aszInterpName[] =
{
- {"nearest"},
- {"bilinear"},
+ "nearest",
+ "bilinear",
// {"bicubic"},
};
-const char* const Projections::s_aszInterpTitle[] =
+const char* const Projections::s_aszInterpTitle[] =
{
- {"Nearest"},
- {"Bilinear"},
+ "Nearest",
+ "Bilinear",
// {"Bicubic"},
};
/* NAME
-* Projections Constructor for projections matrix storage
+* Projections Constructor for projections matrix storage
*
* SYNOPSIS
* proj = projections_create (filename, nView, nDet)
-* Projections& proj Allocated projections structure & matrix
-* int nView Number of rotated view
-* int nDet Number of detectors
+* Projections& proj Allocated projections structure & matrix
+* int nView Number of rotated view
+* int nDet Number of detectors
*
*/
Projections::convertInterpNameToID (const char* const interpName)
{
int interpID = POLAR_INTERP_INVALID;
-
- for (int i = 0; i < s_iInterpCount; i++)
+
+ for (int i = 0; i < s_iInterpCount; i++) {
if (strcasecmp (interpName, s_aszInterpName[i]) == 0) {
interpID = i;
break;
}
-
- return (interpID);
+ }
+ return (interpID);
}
const char*
Projections::convertInterpIDToName (const int interpID)
{
static const char *interpName = "";
-
- if (interpID >= 0 && interpID < s_iInterpCount)
+
+ if (interpID >= 0 && interpID < s_iInterpCount) {
return (s_aszInterpName[interpID]);
-
+ }
return (interpName);
}
Projections::convertInterpIDToTitle (const int interpID)
{
static const char *interpTitle = "";
-
- if (interpID >= 0 && interpID < s_iInterpCount)
+
+ if (interpID >= 0 && interpID < s_iInterpCount) {
return (s_aszInterpTitle[interpID]);
-
+ }
return (interpTitle);
}
m_nView = nView;
m_nDet = nDet;
newProjData ();
-
+
time_t t = time (NULL);
tm* lt = localtime (&t);
m_year = lt->tm_year;
m_label.setLabelType (Array2dFileLabel::L_HISTORY);
deleteProjData();
init (scanner.nView(), scanner.nDet());
-
+
m_rotInc = scanner.rotInc();
m_detInc = scanner.detInc();
m_detStart = scanner.detStart();
}
// Helical 180 Linear Interpolation.
-// This member function takes a set of helical scan projections and
-// performs a linear interpolation between pairs of complementary rays
+// This member function takes a set of helical scan projections and
+// performs a linear interpolation between pairs of complementary rays
// to produce a single projection data set approximating what would be
// measured at a single axial plane.
-// Complementary rays are rays which traverse the same path through the
+// Complementary rays are rays which traverse the same path through the
// phantom in opposite directions.
//
// For parallel beam geometry, a ray with a given gantry angle beta and a
// detector iDet will have a complementary ray at beta + pi and nDet-iDet
//
// For equiangular or equilinear beam geometry the complementary ray to
-// gantry angle beta and fan-beam angle gamma is at
+// gantry angle beta and fan-beam angle gamma is at
// beta-hat = beta +2*gamma + pi, and gamma-hat = -gamma.
// Note that beta-hat - beta depends on gamma and is not constant.
//
// The algorithm used here is from Crawford and King, Med. Phys. 17(6)
// 1990 p967; what they called method "C", CSH-HH. It uses interpolation only
// between pairs of complementary rays on either side of an image plane.
-// Input data must sample gantry angles from zero to
+// Input data must sample gantry angles from zero to
// (2*pi + 2* fan-beam-angle). The data set produced contains gantry
// angles from 0 to Pi+fan-beam-angle. This is a "halfscan" data set,
-// which still contains redundant data, and can be used with a half scan
+// which still contains redundant data, and can be used with a half scan
// reconstruction to produce an image.
// In this particular implementation a lower triangle from (beta,gamma) =
// (0,-fanAngle/2)->(2*fanAngle,-fanAngle/2)->(0,fanAngle/2) contains
// zeros, but is actually redundant with data contained in the region
// (pi+fanAngle,-fanAngle/2)->(pi+fanAngle, fanAngle/2) ->(pi-fanAngle,
-// fanAngle/2).
+// fanAngle/2).
//
-int
+int
Projections::Helical180LI(int interpolation_view)
{
- if (m_geometry == Scanner::GEOMETRY_INVALID)
+ if (m_geometry == Scanner::GEOMETRY_INVALID)
{
std::cerr << "Invalid geometry " << m_geometry << std::endl;
return (2);
- }
- else if (m_geometry == Scanner::GEOMETRY_PARALLEL)
+ }
+ else if (m_geometry == Scanner::GEOMETRY_PARALLEL)
{
std::cerr << "Helical 180LI not yet implemented for PARALLEL geometry"
<< std::endl;
return (2);
}
- else if (m_geometry == Scanner::GEOMETRY_EQUILINEAR)
+ else if (m_geometry == Scanner::GEOMETRY_EQUILINEAR)
{
std::cerr << "Helical 180LI not yet implemented for EQUILINEAR geometry"
<< std::endl;
return (2);
}
- else if (m_geometry == Scanner::GEOMETRY_EQUIANGULAR)
+ else if (m_geometry == Scanner::GEOMETRY_EQUIANGULAR)
{
return Helical180LI_Equiangular(interpolation_view);
}
int
Projections::Helical180LI_Equiangular(int interpView)
{
- double dbeta = m_rotInc;
- double dgamma = m_detInc;
+ double dbeta = m_rotInc;
+ double dgamma = m_detInc;
double fanAngle = m_dFanBeamAngle;
int offsetView=0;
-
+
// is there enough data in the data set? Should have 2(Pi+fanAngle)
// coverage minimum
- if ( m_nView < static_cast<int>((2*( M_PI + fanAngle ) ) / dbeta) -1 ){
+ if ( m_nView < static_cast<int>((2*( PI + fanAngle ) ) / dbeta) -1 ){
std::cerr << "Data set does not include 360 +2*FanBeamAngle views"
<< std::endl;
return (1);
}
- if (interpView < 0) // use default position at M_PI+fanAngle
+ if (interpView < 0) // use default position at PI+fanAngle
{
- interpView = static_cast<int> ((M_PI+fanAngle)/dbeta);
+ interpView = static_cast<int> ((PI+fanAngle)/dbeta);
}
else
{
- // check if there is M_PI+fanAngle data on either side of the
+ // check if there is PI+fanAngle data on either side of the
// of the specified image plane
- if ( interpView*dbeta < M_PI+fanAngle ||
- interpView*dbeta + M_PI + fanAngle > m_nView*dbeta)
+ if ( interpView*dbeta < PI+fanAngle ||
+ interpView*dbeta + PI + fanAngle > m_nView*dbeta)
{
std::cerr << "There isn't PI+fanAngle of data on either side of the requested interpolation view" << std::endl;
return(1);
}
- offsetView = interpView - static_cast<int>((M_PI+fanAngle)/dbeta);
+ offsetView = interpView - static_cast<int>((PI+fanAngle)/dbeta);
}
- int last_interp_view = static_cast<int> ((M_PI+fanAngle)/dbeta);
+ int last_interp_view = static_cast<int> ((PI+fanAngle)/dbeta);
+
-
// make a new array for data...
class DetectorArray ** newdetarray = new DetectorArray * [last_interp_view+1];
for ( int i=0 ; i <= last_interp_view ; i++ ){
newdetarray[i]->setViewAngle((i+offsetView)*dbeta);
DetectorValue* newdetval = (newdetarray[i])->detValues();
// and initialize the data to zero
- for (int j=0; j < m_nDet; j++)
+ for (int j=0; j < m_nDet; j++)
newdetval[j] = 0.;
}
int last_acq_view = 2*last_interp_view;
for ( int iView = 0 ; iView <= last_acq_view; iView++) {
- double beta = iView * dbeta;
-
+ double beta = iView * dbeta;
+
for ( int iDet = 0; iDet < m_nDet; iDet++) {
double gamma = (iDet -(m_nDet-1)/2)* dgamma ;
int newiView, newiDet;
- if (beta < M_PI+fanAngle) { //if (M_PI +fanAngle - beta > dbeta )
- //newbeta = beta;
- //newgamma = gamma;
- newiDet = iDet;
- newiView = iView;
+ if (beta < PI+fanAngle) { //if (PI +fanAngle - beta > dbeta )
+ //newbeta = beta;
+ //newgamma = gamma;
+ newiDet = iDet;
+ newiView = iView;
}
- else // (beta > M_PI+fanAngle)
+ else // (beta > PI+fanAngle)
{
//newbeta = beta +2*gamma - 180;
//newgamma = -gamma;
newiDet = -iDet + (m_nDet -1);
- // newiView = nearest<int>((beta + 2*gamma - M_PI)/dbeta);
- //newiView = static_cast<int>(( (iView*dbeta) + 2*(iDet-(m_nDet-1)/2)*dgamma - M_PI)/dbeta);
- newiView = nearest<int>(( (iView*dbeta) + 2*(iDet-(m_nDet-1)/2)*dgamma - M_PI)/dbeta);
- }
+ // newiView = nearest<int>((beta + 2*gamma - PI)/dbeta);
+ //newiView = static_cast<int>(( (iView*dbeta) + 2*(iDet-(m_nDet-1)/2)*dgamma - PI)/dbeta);
+ newiView = nearest<int>(( (iView*dbeta) + 2*(iDet-(m_nDet-1)/2)*dgamma - PI)/dbeta);
+ }
#ifdef DEBUG
//std::cout << beta << " "<< gamma << " " << newbeta << " " << newgamma <<" " << iView-offsetView << " " << iDet << " " << newiView << " " << newiDet << std::endl;
//std::cout << iView-offsetView << " " << iDet << " " << newiView << " " << newiDet << std::endl;
#endif
- if ( ( beta > fanAngle - 2*gamma)
- && ( beta < 2*M_PI + fanAngle -2*gamma) )
+ if ( ( beta > fanAngle - 2*gamma)
+ && ( beta < 2*PI + fanAngle -2*gamma) )
{ // not in region 1 or 8
DetectorValue* detval = (m_projData[iView+offsetView])->detValues();
DetectorValue* newdetval = (newdetarray[newiView])->detValues();
- if ( beta > fanAngle - 2*gamma
+ if ( beta > fanAngle - 2*gamma
&& beta <= 2*fanAngle ) { // in region 2
- newdetval[newiDet] +=
- (beta +2*gamma - fanAngle)/(M_PI+2*gamma)
+ newdetval[newiDet] +=
+ (beta +2*gamma - fanAngle)/(PI+2*gamma)
* detval[iDet];
- } else if ( beta > 2*fanAngle
- && beta <= M_PI - 2*gamma) { // in region 3
- newdetval[newiDet] +=
- (beta +2*gamma - fanAngle)/(M_PI+2*gamma)
+ } else if ( beta > 2*fanAngle
+ && beta <= PI - 2*gamma) { // in region 3
+ newdetval[newiDet] +=
+ (beta +2*gamma - fanAngle)/(PI+2*gamma)
* detval[iDet];
- }
- else if ( beta > M_PI -2*gamma
- && beta <= M_PI + fanAngle ) { // in region 4
- newdetval[newiDet] +=
- (beta +2*gamma - fanAngle)/(M_PI+2*gamma)
+ }
+ else if ( beta > PI -2*gamma
+ && beta <= PI + fanAngle ) { // in region 4
+ newdetval[newiDet] +=
+ (beta +2*gamma - fanAngle)/(PI+2*gamma)
* detval[iDet];
- }
- else if ( beta > M_PI + fanAngle
- && beta <= M_PI +2*fanAngle -2*gamma) { // in region 5
- newdetval[newiDet] +=
- (2*M_PI - beta - 2*gamma + fanAngle)/(M_PI-2*gamma)
+ }
+ else if ( beta > PI + fanAngle
+ && beta <= PI +2*fanAngle -2*gamma) { // in region 5
+ newdetval[newiDet] +=
+ (2*PI - beta - 2*gamma + fanAngle)/(PI-2*gamma)
*detval[iDet];
- }
- else if ( beta > M_PI +2*fanAngle -2*gamma
- && beta <= 2*M_PI) { // in region 6
- newdetval[newiDet] +=
- (2*M_PI - beta - 2*gamma + fanAngle)/(M_PI-2*gamma)
+ }
+ else if ( beta > PI +2*fanAngle -2*gamma
+ && beta <= 2*PI) { // in region 6
+ newdetval[newiDet] +=
+ (2*PI - beta - 2*gamma + fanAngle)/(PI-2*gamma)
*detval[iDet];
- }
- else if ( beta > 2*M_PI
- && beta <= 2*M_PI + fanAngle -2*gamma){ // in region 7
- newdetval[newiDet] +=
- (2*M_PI - beta -2*gamma + fanAngle)/(M_PI-2*gamma)
+ }
+ else if ( beta > 2*PI
+ && beta <= 2*PI + fanAngle -2*gamma){ // in region 7
+ newdetval[newiDet] +=
+ (2*PI - beta -2*gamma + fanAngle)/(PI-2*gamma)
*detval[iDet];
- }
- else
- {
+ }
+ else
+ {
; // outside region of interest
}
}
m_projData = newdetarray;
m_nView = last_interp_view+1;
- return (0);
+ return (0);
}
// HalfScanFeather:
-// A HalfScan Projection Data Set for equiangular geometry,
-// covering gantry angles from 0 to pi+fanBeamAngle
+// A HalfScan Projection Data Set for equiangular geometry,
+// covering gantry angles from 0 to pi+fanBeamAngle
// and fan angle gamma from -fanBeamAngle/2 to fanBeamAngle/2
// contains redundant information. If one copy of this data is left as
-// zero, (as in the Helical180LI routine above) overweighting is avoided,
-// but the discontinuity in the data introduces ringing in the image.
+// zero, (as in the Helical180LI routine above) overweighting is avoided,
+// but the discontinuity in the data introduces ringing in the image.
// This routine makes a copy of the data and applies a weighting to avoid
// over-representation, as given in Appendix C of Crawford and King, Med
// Phys 17 1990, p967.
int
Projections::HalfScanFeather(void)
{
- double dbeta = m_rotInc;
- double dgamma = m_detInc;
+ double dbeta = m_rotInc;
+ double dgamma = m_detInc;
double fanAngle = m_dFanBeamAngle;
-// is there enough data?
- if ( m_nView != static_cast<int>(( M_PI+fanAngle ) / dbeta) +1 ){
+// is there enough data?
+ if ( m_nView != static_cast<int>(( PI+fanAngle ) / dbeta) +1 ){
std::cerr << "Data set does seem have enough data to be a halfscan data set" << std::endl;
return (1);
}
}
for ( int iView2 = 0 ; iView2 < m_nView; iView2++) {
- double beta2 = iView2 * dbeta;
+ double beta2 = iView2 * dbeta;
for ( int iDet2 = 0; iDet2 < m_nDet; iDet2++) {
double gamma2 = (iDet2 -(m_nDet-1)/2)* dgamma ;
- if ( ( beta2 >= M_PI - 2*gamma2) ) { // in redundant data region
+ if ( ( beta2 >= PI - 2*gamma2) ) { // in redundant data region
int iView1, iDet1;
iDet1 = (m_nDet -1) - iDet2;
- //iView1 = nearest<int>((beta2 + 2*gamma2 - M_PI)/dbeta);
- iView1 = nearest<int>(( (iView2*dbeta)
- + 2*(iDet2-(m_nDet-1)/2)*dgamma - M_PI)/dbeta);
+ //iView1 = nearest<int>((beta2 + 2*gamma2 - PI)/dbeta);
+ iView1 = nearest<int>(( (iView2*dbeta)
+ + 2*(iDet2-(m_nDet-1)/2)*dgamma - PI)/dbeta);
DetectorValue* detval2 = (m_projData[iView2])->detValues();
detval1[iDet1] = detval2[iDet2] ;
double x, w1,w2,beta1, gamma1;
- beta1= iView1*dbeta;
+ beta1= iView1*dbeta;
gamma1 = -gamma2;
if ( beta1 <= (fanAngle - 2*gamma1) )
x = beta1 / ( fanAngle - 2*gamma1);
- else if ( (fanAngle - 2*gamma1 <= beta1 ) && beta1 <= M_PI - 2*gamma1)
- x = 1;
- else if ( (M_PI - 2*gamma1 <= beta1 ) && ( beta1 <=M_PI + fanAngle) )
- x = (M_PI +fanAngle - beta1)/(fanAngle + 2*gamma1);
+ else if ( (fanAngle - 2*gamma1 <= beta1 ) && beta1 <= PI - 2*gamma1)
+ x = 1;
+ else if ( (PI - 2*gamma1 <= beta1 ) && ( beta1 <=PI + fanAngle) )
+ x = (PI +fanAngle - beta1)/(fanAngle + 2*gamma1);
else {
std::cerr << "Shouldn't be here!"<< std::endl;
return(4);
}
w1 = (3*x - 2*x*x)*x;
w2 = 1-w1;
- detval1[iDet1] *= w1;
+ detval1[iDet1] *= w1;
detval2[iDet2] *= w2;
- }
+ }
}
}
- // heuristic scaling, why this factor?
- double scalefactor = m_nView * m_rotInc / M_PI;
+ // heuristic scaling, why this factor?
+ double scalefactor = m_nView * m_rotInc / PI;
for ( int iView = 0 ; iView < m_nView; iView++) {
DetectorValue* detval = (m_projData[iView])->detValues();
for ( int iDet = 0; iDet < m_nDet; iDet++) {
}
}
- return (0);
+ return (0);
}
// NAME
// newProjData
-void
+void
Projections::newProjData (void)
{
if (m_projData)
sys_error(ERR_WARNING, "m_projData != NULL [newProjData]");
-
+
if (m_nView > 0 && m_nDet) {
m_projData = new DetectorArray* [m_nView];
-
+
for (int i = 0; i < m_nView; i++)
m_projData[i] = new DetectorArray (m_nDet);
}
/* NAME
-* projections_free Free memory allocated to projections
+* projections_free Free memory allocated to projections
*
* SYNOPSIS
* projections_free(proj)
-* Projections& proj Projectionss to be deallocated
+* Projections& proj Projectionss to be deallocated
*/
-void
+void
Projections::deleteProjData (void)
{
if (m_projData != NULL) {
for (int i = 0; i < m_nView; i++)
delete m_projData[i];
-
+
delete m_projData;
m_projData = NULL;
}
*
*/
-bool
+bool
Projections::headerWrite (fnetorderstream& fs)
{
kuint16 _hsize = m_headerSize;
kuint16 _hour = m_hour;
kuint16 _minute = m_minute;
kuint16 _second = m_second;
-
+
kfloat64 _calcTime = m_calcTime;
kfloat64 _rotStart = m_rotStart;
kfloat64 _rotInc = m_rotInc;
fs.seekp(0);
if (! fs)
return false;
-
+
fs.writeInt16 (_hsize);
fs.writeInt16 (_signature);
fs.writeInt32 (_nView);
fs.writeInt16 (_second);
fs.writeInt16 (_remarksize);
fs.write (m_remark.c_str(), _remarksize);
-
+
m_headerSize = fs.tellp();
_hsize = m_headerSize;
fs.seekp(0);
fs.writeInt16 (_hsize);
if (! fs)
return false;
-
+
return true;
}
kuint16 _hsize, _signature, _year, _month, _day, _hour, _minute, _second, _remarksize = 0;
kuint32 _nView, _nDet, _geom;
kfloat64 _calcTime, _rotStart, _rotInc, _detStart, _detInc, _focalLength, _sourceDetectorLength, _viewDiameter, _fanBeamAngle;
-
+
fs.seekg(0);
if (! fs)
return false;
-
+
fs.readInt16 (_hsize);
fs.readInt16 (_signature);
fs.readInt32 (_nView);
fs.readInt16 (_minute);
fs.readInt16 (_second);
fs.readInt16 (_remarksize);
-
+
if (! fs) {
sys_error (ERR_SEVERE, "Error reading header information , _remarksize=%d [projections_read_header]", _remarksize);
return false;
}
-
+
if (_signature != m_signature) {
sys_error (ERR_SEVERE, "File %s does not have a valid projection file signature", m_filename.c_str());
return false;
}
-
+
char* pszRemarkStorage = new char [_remarksize+1];
fs.read (pszRemarkStorage, _remarksize);
if (! fs) {
pszRemarkStorage[_remarksize] = 0;
m_remark = pszRemarkStorage;
delete pszRemarkStorage;
-
+
off_t _hsizeread = fs.tellg();
if (!fs || _hsizeread != _hsize) {
sys_error (ERR_WARNING, "File header size read %ld != file header size stored %ld [read_projections_header]\n_remarksize=%ld", (long int) _hsizeread, _hsize, _remarksize);
return false;
}
-
+
m_headerSize = _hsize;
m_nView = _nView;
m_nDet = _nDet;
m_hour = _hour;
m_minute = _minute;
m_second = _second;
-
+
m_label.setLabelType (Array2dFileLabel::L_HISTORY);
m_label.setLabelString (m_remark);
m_label.setCalcTime (m_calcTime);
m_label.setDateTime (m_year, m_month, m_day, m_hour, m_minute, m_second);
-
+
return true;
}
#ifdef MSVC
frnetorderstream fileRead (m_filename.c_str(), std::ios::in | std::ios::binary);
#else
- frnetorderstream fileRead (m_filename.c_str(), std::ios::in | std::ios::binary | std::ios::nocreate);
+ frnetorderstream fileRead (m_filename.c_str(), std::ios::in | std::ios::binary); // | std::ios::nocreate);
#endif
-
+
if (fileRead.fail())
return false;
-
+
if (! headerRead (fileRead))
return false;
-
+
deleteProjData ();
newProjData();
-
+
for (int i = 0; i < m_nView; i++) {
if (! detarrayRead (fileRead, *m_projData[i], i))
break;
}
-
+
fileRead.close();
return true;
}
-bool
+bool
Projections::copyViewData (const std::string& filename, std::ostream& os, int startView, int endView)
{
return copyViewData (filename.c_str(), os, startView, endView);
}
-bool
+bool
Projections::copyViewData (const char* const filename, std::ostream& os, int startView, int endView)
{
frnetorderstream is (filename, std::ios::in | std::ios::binary);
kuint16 sizeHeader, signature;
kuint32 _nView, _nDet;
-
+
is.seekg (0);
if (is.fail()) {
sys_error (ERR_SEVERE, "Unable to read projection file %s", filename);
is.readInt32 (_nDet);
int nView = _nView;
int nDet = _nDet;
-
+
if (signature != m_signature) {
sys_error (ERR_SEVERE, "Illegal signature in projection file %s", filename);
return false;
}
-
+
if (startView < 0)
startView = 0;
if (startView > nView - 1)
startView = nView;
if (endView < 0 || endView > nView - 1)
endView = nView - 1;
-
+
if (startView > endView) { // swap if start > end
int tempView = endView;
endView = startView;
startView = tempView;
}
-
+
int sizeView = 8 /* view_angle */ + 4 /* nDet */ + (4 * nDet);
unsigned char* pViewData = new unsigned char [sizeView];
-
+
for (int i = startView; i <= endView; i++) {
is.seekg (sizeHeader + i * sizeView);
is.read (reinterpret_cast<char*>(pViewData), sizeView);
if (is.fail() || os.fail())
break;
}
-
+
delete pViewData;
- if (is.fail())
+ if (is.fail())
sys_error (ERR_SEVERE, "Error reading projection file");
- if (os.fail())
+ if (os.fail())
sys_error (ERR_SEVERE, "Error writing projection file");
-
+
return (! (is.fail() | os.fail()));
}
-bool
+bool
Projections::copyHeader (const std::string& filename, std::ostream& os)
{
return copyHeader (filename.c_str(), os);
sys_error (ERR_SEVERE, "Illegal signature in projection file %s", filename);
return false;
}
-
+
unsigned char* pHdrData = new unsigned char [sizeHeader];
is.read (reinterpret_cast<char*>(pHdrData), sizeHeader);
if (is.fail()) {
sys_error (ERR_SEVERE, "Error reading header");
return false;
}
-
+
os.write (reinterpret_cast<char*>(pHdrData), sizeHeader);
if (os.fail()) {
sys_error (ERR_SEVERE, "Error writing header");
return false;
}
-
+
return true;
}
sys_error (ERR_SEVERE, "Error opening file %s for output [projections_create]", filename);
return false;
}
-
+
if (! headerWrite (fs))
return false;
-
+
if (m_projData != NULL) {
for (int i = 0; i < m_nView; i++) {
if (! detarrayWrite (fs, *m_projData[i], i))
}
if (! fs)
return false;
-
+
fs.close();
-
+
return true;
}
/* NAME
-* detarrayRead Read a Detector Array structure from the disk
+* detarrayRead Read a Detector Array structure from the disk
*
* SYNOPSIS
* detarrayRead (proj, darray, view_num)
-* DETARRAY *darray Detector array storage location to be filled
-* int view_num View number to read
+* DETARRAY *darray Detector array storage location to be filled
+* int view_num View number to read
*/
bool
const int detheader_bytes = sizeof(kfloat64) /* view_angle */ + sizeof(kint32) /* nDet */;
const int view_bytes = detheader_bytes + detval_bytes;
const off_t start_data = m_headerSize + (iview * view_bytes);
- DetectorValue* detval_ptr = darray.detValues();
+ DetectorValue* detval_ptr = darray.detValues();
kfloat64 view_angle;
kuint32 nDet;
-
+
fs.seekg (start_data);
-
+
fs.readFloat64 (view_angle);
fs.readInt32 (nDet);
darray.setViewAngle (view_angle);
// darray.setNDet ( nDet);
-
+
for (unsigned int i = 0; i < nDet; i++) {
kfloat32 detval;
fs.readFloat32 (detval);
}
if (! fs)
return false;
-
+
return true;
}
/* NAME
-* detarrayWrite Write detector array data to the disk
+* detarrayWrite Write detector array data to the disk
*
* SYNOPSIS
* detarrayWrite (darray, view_num)
-* DETARRAY *darray Detector array data to be written
-* int view_num View number to write
+* DETARRAY *darray Detector array data to be written
+* int view_num View number to write
*
* DESCRIPTION
* This routine writes the detarray data from the disk sequentially to
const int detheader_bytes = sizeof(kfloat64) /* view_angle */ + sizeof(kint32) /* nDet */;
const int view_bytes = detheader_bytes + detval_bytes;
const off_t start_data = m_headerSize + (iview * view_bytes);
- const DetectorValue* const detval_ptr = darray.detValues();
+ const DetectorValue* const detval_ptr = darray.detValues();
kfloat64 view_angle = darray.viewAngle();
kuint32 nDet = darray.nDet();
-
+
fs.seekp (start_data);
if (! fs) {
sys_error (ERR_SEVERE, "Error seeking detectory array [detarrayWrite]");
return false;
}
-
+
fs.writeFloat64 (view_angle);
fs.writeInt32 (nDet);
-
+
for (unsigned int i = 0; i < nDet; i++) {
kfloat32 detval = detval_ptr[i];
fs.writeFloat32 (detval);
}
-
+
if (! fs)
return (false);
-
+
return true;
}
/* NAME
-* printProjectionData Print projections data
+* printProjectionData Print projections data
*
* SYNOPSIS
* printProjectionData ()
}
}
-void
+void
Projections::printScanInfo (std::ostringstream& os) const
{
os << "Number of detectors: " << m_nDet << "\n";
}
-bool
+bool
Projections::convertPolar (ImageFile& rIF, int iInterpolationID)
{
unsigned int nx = rIF.nx();
Projections* pProj = this;
if (m_geometry == Scanner::GEOMETRY_EQUIANGULAR || m_geometry == Scanner::GEOMETRY_EQUILINEAR)
pProj = interpolateToParallel();
-
+
Array2d<double> adView (nx, ny);
Array2d<double> adDet (nx, ny);
double** ppdView = adView.getArray();
double** ppdDet = adDet.getArray();
std::complex<double>** ppcDetValue = new std::complex<double>* [pProj->m_nView];
- unsigned int iView;
+ int iView;
for (iView = 0; iView < pProj->m_nView; iView++) {
ppcDetValue[iView] = new std::complex<double> [pProj->m_nDet];
DetectorValue* detval = pProj->getDetectorArray (iView).detValues();
- for (unsigned int iDet = 0; iDet < pProj->m_nDet; iDet++)
+ for (int iDet = 0; iDet < pProj->m_nDet; iDet++)
ppcDetValue[iView][iDet] = std::complex<double>(detval[iDet], 0);
}
pProj->calcArrayPolarCoordinates (nx, ny, ppdView, ppdDet, pProj->m_nDet, 1., pProj->m_detInc);
- pProj->interpolatePolar (v, vImag, nx, ny, ppcDetValue, ppdView, ppdDet, pProj->m_nView, pProj->m_nDet,
+ pProj->interpolatePolar (v, vImag, nx, ny, ppcDetValue, ppdView, ppdDet, pProj->m_nView, pProj->m_nDet,
pProj->m_nDet, iInterpolationID);
for (iView = 0; iView < pProj->m_nView; iView++)
}
-bool
+bool
Projections::convertFFTPolar (ImageFile& rIF, int iInterpolationID, int iZeropad)
{
#ifndef HAVE_FFTW
if (! v || nx == 0 || ny == 0)
return false;
-
+
Projections* pProj = this;
if (m_geometry == Scanner::GEOMETRY_EQUIANGULAR || m_geometry == Scanner::GEOMETRY_EQUILINEAR)
pProj = interpolateToParallel();
- int iInterpDet = nx;
-// int iInterpDet = pProj->m_nDet;
+ int iInterpDet = static_cast<int>(static_cast<double>(sqrt(nx*nx+ny*ny)));
int iNumInterpDetWithZeros = ProcessSignal::addZeropadFactor (iInterpDet, iZeropad);
-
+ double dProjScale = iInterpDet / (pProj->viewDiameter() * 0.05);
double dZeropadRatio = static_cast<double>(iNumInterpDetWithZeros) / static_cast<double>(iInterpDet);
- fftw_plan plan = fftw_create_plan (iNumInterpDetWithZeros, FFTW_FORWARD, FFTW_IN_PLACE | FFTW_ESTIMATE | FFTW_USE_WISDOM);
+ fftw_complex* pcIn = static_cast<fftw_complex*> (fftw_malloc (sizeof(fftw_complex) * iNumInterpDetWithZeros));
+ fftw_plan plan = fftw_plan_dft_1d (iNumInterpDetWithZeros, pcIn, pcIn, FFTW_FORWARD, FFTW_ESTIMATE);
- fftw_complex* pcIn = new fftw_complex [iNumInterpDetWithZeros];
std::complex<double>** ppcDetValue = new std::complex<double>* [pProj->m_nView];
- double dInterpScale = (pProj->m_nDet-1) / static_cast<double>(iInterpDet-1) / SQRT2;
-
+ //double dInterpScale = (pProj->m_nDet-1) / static_cast<double>(iInterpDet-1);
+ double dInterpScale = pProj->m_nDet / static_cast<double>(iInterpDet);
+
double dFFTScale = 1. / static_cast<double>(iInterpDet * iInterpDet);
int iMidPoint = iInterpDet / 2;
double dMidPoint = static_cast<double>(iInterpDet) / 2.;
int iZerosAdded = iNumInterpDetWithZeros - iInterpDet;
- // For each view, interpolate to nx length, shift to center at origin, and FFt transform
- for (unsigned int iView = 0; iView < m_nView; iView++) {
+ // For each view, interpolate, shift to center at origin, and FFT
+ for (int iView = 0; iView < m_nView; iView++) {
DetectorValue* detval = pProj->getDetectorArray(iView).detValues();
LinearInterpolator<DetectorValue> projInterp (detval, pProj->m_nDet);
- for (unsigned int iDet = 0; iDet < iInterpDet; iDet++) {
+ for (int iDet = 0; iDet < iInterpDet; iDet++) {
double dInterpPos = (m_nDet / 2.) + (iDet - dMidPoint) * dInterpScale;
- pcIn[iDet].re = projInterp.interpolate (dInterpPos) * dInterpScale;
- pcIn[iDet].im = 0;
+ pcIn[iDet][0] = projInterp.interpolate (dInterpPos) * dProjScale;
+ pcIn[iDet][1] = 0;
}
Fourier::shuffleFourierToNaturalOrder (pcIn, iInterpDet);
if (iZerosAdded > 0) {
- for (unsigned int iDet1 = iMidPoint; iDet1 < iInterpDet; iDet1++)
- pcIn[iDet1+iZerosAdded] = pcIn[iDet1];
- for (unsigned int iDet2 = iMidPoint; iDet2 < iMidPoint + iZerosAdded; iDet2++)
- pcIn[iDet2].re = pcIn[iDet2].im = 0;
+ for (int iDet1 = iInterpDet -1; iDet1 >= iMidPoint; iDet1--) {
+ pcIn[iDet1+iZerosAdded][0] = pcIn[iDet1][0];
+ pcIn[iDet1+iZerosAdded][1] = pcIn[iDet1][1];
+ }
+ for (int iDet2 = iMidPoint; iDet2 < iMidPoint + iZerosAdded; iDet2++)
+ pcIn[iDet2][0] = pcIn[iDet2][1] = 0;
}
- fftw_one (plan, pcIn, NULL);
+ fftw_execute (plan);
ppcDetValue[iView] = new std::complex<double> [iNumInterpDetWithZeros];
- for (unsigned int iD = 0; iD < iNumInterpDetWithZeros; iD++) {
- ppcDetValue[iView][iD] = std::complex<double> (pcIn[iD].re * dFFTScale, pcIn[iD].im * dFFTScale);
+ for (int iD = 0; iD < iNumInterpDetWithZeros; iD++) {
+ ppcDetValue[iView][iD] = std::complex<double> (pcIn[iD][0] * dFFTScale, pcIn[iD][1] * dFFTScale);
}
Fourier::shuffleFourierToNaturalOrder (ppcDetValue[iView], iNumInterpDetWithZeros);
}
- delete [] pcIn;
+ fftw_free(pcIn) ;
+
+ fftw_destroy_plan (plan);
- fftw_destroy_plan (plan);
-
Array2d<double> adView (nx, ny);
Array2d<double> adDet (nx, ny);
double** ppdView = adView.getArray();
double** ppdDet = adDet.getArray();
- pProj->calcArrayPolarCoordinates (nx, ny, ppdView, ppdDet, iNumInterpDetWithZeros, dZeropadRatio,
+ pProj->calcArrayPolarCoordinates (nx, ny, ppdView, ppdDet, iNumInterpDetWithZeros, dZeropadRatio,
pProj->m_detInc * dInterpScale);
- pProj->interpolatePolar (v, vImag, nx, ny, ppcDetValue, ppdView, ppdDet, pProj->m_nView, pProj->m_nDet,
+ pProj->interpolatePolar (v, vImag, nx, ny, ppcDetValue, ppdView, ppdDet, pProj->m_nView, pProj->m_nDet,
iNumInterpDetWithZeros, iInterpolationID);
if (m_geometry == Scanner::GEOMETRY_EQUIANGULAR || m_geometry == Scanner::GEOMETRY_EQUILINEAR)
int iNumDetWithZeros, double dZeropadRatio, double dDetInc)
{
double dLength = viewDiameter();
-// double dLength = phmLen();
double xMin = -dLength / 2;
double xMax = xMin + dLength;
double yMin = -dLength / 2;
yMin = (yMin - yCent) * dZeropadRatio + yCent;
yMax = (yMax - yCent) * dZeropadRatio + yCent;
- double xInc = (xMax - xMin) / nx; // size of cells
+ double xInc = (xMax - xMin) / nx; // size of cells
double yInc = (yMax - yMin) / ny;
+ double dDetCenter = (iNumDetWithZeros - 1) / 2.; // index refering to L=0 projection
// +1 is correct for frequency data, ndet-1 is correct for projections
- int iDetCenter = (iNumDetWithZeros - 1) / 2; // index refering to L=0 projection
- if (isEven (iNumDetWithZeros))
- iDetCenter = (iNumDetWithZeros + 1) / 2;
+ // if (isEven (iNumDetWithZeros))
+ // dDetCenter = (iNumDetWithZeros + 0) / 2;
// Calculates polar coordinates (view#, det#) for each point on phantom grid
- double x = xMin + xInc / 2; // Rectang coords of center of pixel
+ double x = xMin + xInc / 2; // Rectang coords of center of pixel
for (unsigned int ix = 0; ix < nx; x += xInc, ix++) {
double y = yMin + yInc / 2;
for (unsigned int iy = 0; iy < ny; y += yInc, iy++) {
double r = ::sqrt (x * x + y * y);
double phi = atan2 (y, x);
- if (phi < 0)
+ if (phi <= -m_rotInc / 2)
phi += TWOPI;
- if (phi >= PI) {
+ if (phi >= PI - (m_rotInc / 2)) {
phi -= PI;
r = -r;
}
-
+
ppdView[ix][iy] = (phi - m_rotStart) / m_rotInc;
- ppdDet[ix][iy] = (r / dDetInc) + iDetCenter;
+ ppdDet[ix][iy] = (r / dDetInc) + dDetCenter;
}
}
}
void
Projections::interpolatePolar (ImageFileArray& v, ImageFileArray& vImag,
- unsigned int nx, unsigned int ny, std::complex<double>** ppcDetValue, double** ppdView,
+ unsigned int nx, unsigned int ny, std::complex<double>** ppcDetValue, double** ppdView,
double** ppdDet, unsigned int nView, unsigned int nDet, unsigned int nDetWithZeros, int iInterpolationID)
{
typedef std::complex<double> complexValue;
- BilinearInterpolator<complexValue>* pBilinear;
+ BilinearPolarInterpolator<complexValue>* pBilinear = NULL;
+ BicubicPolyInterpolator<complexValue>* pBicubic = NULL;
if (iInterpolationID == POLAR_INTERP_BILINEAR)
- pBilinear = new BilinearInterpolator<complexValue> (ppcDetValue, nView, nDetWithZeros);
-
- BicubicPolyInterpolator<complexValue>* pBicubic;
- if (iInterpolationID == POLAR_INTERP_BICUBIC)
+ pBilinear = new BilinearPolarInterpolator<complexValue> (ppcDetValue, nView, nDetWithZeros);
+ else if (iInterpolationID == POLAR_INTERP_BICUBIC)
pBicubic = new BicubicPolyInterpolator<complexValue> (ppcDetValue, nView, nDetWithZeros);
for (unsigned int ix = 0; ix < ny; ix++) {
for (unsigned int iy = 0; iy < ny; iy++) {
-
if (iInterpolationID == POLAR_INTERP_NEAREST) {
unsigned int iView = nearest<int> (ppdView[ix][iy]);
unsigned int iDet = nearest<int> (ppdDet[ix][iy]);
- if (iView == nView) {
+ if (iView == nView)
iView = 0;
- iDet = m_nDet - iDet;
- }
if (iDet >= 0 && iDet < nDetWithZeros && iView >= 0 && iView < nView) {
v[ix][iy] = ppcDetValue[iView][iDet].real();
if (vImag)
vImag[ix][iy] = ppcDetValue[iView][iDet].imag();
- } else
+ } else {
v[ix][iy] = 0;
+ if (vImag)
+ vImag[ix][iy] = 0;
+ }
} else if (iInterpolationID == POLAR_INTERP_BILINEAR) {
std::complex<double> vInterp = pBilinear->interpolate (ppdView[ix][iy], ppdDet[ix][iy]);
m_rotStart = 0;
m_dViewDiameter = sin (m_dFanBeamAngle / 2) * m_dFocalLength * 2;
- if (! ((iNViews == 750 && lDataLength == 1560000L) || (iNViews == 950 && lDataLength == 1976000L)
+ if (! ((iNViews == 750 && lDataLength == 1560000L) || (iNViews == 950 && lDataLength == 1976000L)
|| (iNViews == 1500 && lDataLength == 3120000)))
return false;
for (int iv = 0; iv < iNViews; iv++) {
unsigned char* pArgBase = pData + lDataPos;
unsigned char* p = pArgBase+0; SwapBytes4IfLittleEndian (p);
- long lProjNumber = *reinterpret_cast<long*>(p);
+ // long lProjNumber = *reinterpret_cast<long*>(p);
p = pArgBase+20; SwapBytes4IfLittleEndian (p);
long lEscale = *reinterpret_cast<long*>(p);
p = pArgBase+28; SwapBytes4IfLittleEndian (p);
- long lTime = *reinterpret_cast<long*>(p);
+ // long lTime = *reinterpret_cast<long*>(p);
p = pArgBase + 4; SwapBytes4IfLittleEndian (p);
double dAlpha = *reinterpret_cast<float*>(p) + HALFPI;
p = pArgBase+12; SwapBytes4IfLittleEndian (p);
- double dAlign = *reinterpret_cast<float*>(p);
+ // double dAlign = *reinterpret_cast<float*>(p);
p = pArgBase + 16; SwapBytes4IfLittleEndian (p);
- double dMaxValue = *reinterpret_cast<float*>(p);
+ // double dMaxValue = *reinterpret_cast<float*>(p);
DetectorArray& detArray = getDetectorArray (iv);
detArray.setViewAngle (dAlpha);
double dViewAngle = m_rotStart;
int iLastFloor = -1;
+ LinearInterpolator<double> interp (pdThetaValuesForT, pdRaysumsForT, pProjNew->nView(), false);
for (int iV = 0; iV < pProjNew->nView(); iV++, dViewAngle += pProjNew->m_rotInc) {
DetectorValue* detValues = pProjNew->getDetectorArray (iV).detValues();
- LinearInterpolator<double> interp (pdThetaValuesForT, pdRaysumsForT, pProjNew->nView(), false);
detValues[iD] = interp.interpolate (dViewAngle, &iLastFloor);
}
}
///////////////////////////////////////////////////////////////////////////////
ParallelRaysums::ParallelRaysums (const Projections* pProjections, int iThetaRange)
-: m_iNumCoordinates(0), m_iNumView(pProjections->nView()), m_iNumDet(pProjections->nDet()),
- m_iThetaRange (iThetaRange), m_pCoordinates(NULL)
+: m_pCoordinates(NULL), m_iNumCoordinates(0), m_iNumView(pProjections->nView()), m_iNumDet(pProjections->nDet()),
+ m_iThetaRange (iThetaRange)
{
int iGeometry = pProjections->geometry();
double dDetInc = pProjections->detInc();
} else if (iGeometry == Scanner::GEOMETRY_EQUILINEAR) {
double dFanAngle = atan (dDetPos / pProjections->sourceDetectorLength());
pC->m_dTheta = dViewAngle + dFanAngle;
- pC->m_dT = dFocalLength * sin(dFanAngle);
+ pC->m_dT = dFocalLength * sin(dFanAngle);
} else if (iGeometry == Scanner::GEOMETRY_EQUIANGULAR) {
// fan angle is same as dDetPos
pC->m_dTheta = dViewAngle + dDetPos;
- pC->m_dT = dFocalLength * sin (dDetPos);
+ pC->m_dT = dFocalLength * sin (dDetPos);
}
if (m_iThetaRange != THETA_RANGE_UNCONSTRAINED) {
pC->m_dTheta = normalizeAngle (pC->m_dTheta);
projects / ctsim.git / blobdiff