;;;; Author: Kevin M. Rosenberg
;;;; Created: Apr 2000
;;;;
-;;;; $Id$
-;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2010 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
(when *has-fixnum-class*
(defmethod fmt-cui ((c fixnum))
- (prefixed-fixnum-string c #\C 7)))
+ (if (>= c 10000000)
+ (prefixed-fixnum-string c #\C 8)
+ (prefixed-fixnum-string c #\C 7))))
(defmethod fmt-cui ((c integer))
- (prefixed-integer-string c #\C 7))
+ (if (>= c 10000000)
+ (prefixed-fixnum-string c #\C 8)
+ (prefixed-fixnum-string c #\C 7)))
(defmethod fmt-cui ((c string))
(if (eql (aref c 0) #\C)
(when *has-fixnum-class*
(defmethod fmt-lui ((l fixnum))
- (prefixed-fixnum-string l #\L 7)))
+ (if (>= l 10000000)
+ (prefixed-fixnum-string l #\L 8)
+ (prefixed-fixnum-string l #\L 7))))
(defmethod fmt-lui ((l integer))
- (prefixed-integer-string l #\L 7))
+ (if (>= l 10000000)
+ (prefixed-fixnum-string l #\L 8)
+ (prefixed-fixnum-string l #\L 7)))
(defmethod fmt-lui ((l string))
(if (eql (aref l 0) #\L)
(when *has-fixnum-class*
(defmethod fmt-sui ((s fixnum))
- (prefixed-fixnum-string s #\S 7)))
+ (if (>= s 10000000)
+ (prefixed-fixnum-string s #\S 8)
+ (prefixed-fixnum-string s #\S 7))))
(defmethod fmt-sui ((s integer))
- (prefixed-integer-string s #\S 7))
+ (if (>= s 10000000)
+ (prefixed-fixnum-string s #\S 8)
+ (prefixed-fixnum-string s #\S 7)))
(defmethod fmt-sui ((s string))
(if (eql (aref s 0) #\S)
(defun check-ui (ui start-char len)
(when (and (stringp ui)
- (= (length ui) (1+ len))
- (char-equal start-char (schar ui 0))
- (ignore-errors (parse-integer ui :start 1)))
+ (= (length ui) (1+ len))
+ (char-equal start-char (schar ui 0))
+ (ignore-errors (parse-integer ui :start 1)))
t))
(or (not is-term) is-english)))
(defun print-umlsclass (obj &key (stream *standard-output*)
- (vid :compact-text)
- (file-wrapper nil) (english-only t) (subobjects nil)
- (refvars nil) (link-printer nil))
+ (vid :compact-text)
+ (file-wrapper nil) (english-only t) (subobjects nil)
+ (refvars nil) (link-printer nil))
(view obj :stream stream :vid vid :subobjects subobjects
- :file-wrapper file-wrapper
- :filter (if english-only nil #'english-term-filter)
- :link-printer link-printer
- :refvars refvars))
+ :file-wrapper file-wrapper
+ :filter (if english-only nil #'english-term-filter)
+ :link-printer link-printer
+ :refvars refvars))
(defmacro define-lookup-display (newfuncname lookup-func)
"Defines functions for looking up and displaying objects"
`(defun ,newfuncname (keyval &key (stream *standard-output*) (vid :compact-text)
- (file-wrapper t) (english-only nil) (subobjects nil))
+ (file-wrapper t) (english-only nil) (subobjects nil))
(let ((obj (funcall ,lookup-func keyval)))
(print-umlsclass obj :stream stream :vid vid
- :file-wrapper file-wrapper :english-only english-only
- :subobjects subobjects)
+ :file-wrapper file-wrapper :english-only english-only
+ :subobjects subobjects)
obj)))
(define-lookup-display display-con #'find-ucon-cui)
"Returns T if UCON has a semantic type of TUI."
(some #'(lambda (usty) (= tui (tui usty))) (s#sty ucon)))
-(defgeneric suistr (lo))
-(defmethod suistr ((lo ulo))
- "Return the string for a ulo object"
- (find-string-sui (sui lo)))
-
(defgeneric pf-ustr (obj))
(defmethod pf-ustr ((ucon ucon))
"Return the preferred ustr for a ucon"
(defmethod mesh-number ((ustr ustr))
(let ((codes
- (map-and-remove-nils
- (lambda (sat)
- (when (and (string-equal "MSH" (sab sat))
- (string-equal "MN" (atn sat)))
- (atv sat)))
- (s#sat ustr))))
+ (map-and-remove-nils
+ (lambda (sat)
+ (when (and (string-equal "MSH" (sab sat))
+ (string-equal "MN" (atn sat)))
+ (atv sat)))
+ (s#sat ustr))))
(if (= 1 (length codes))
- (car codes)
+ (car codes)
codes)))
(defun ucon-ustrs (ucon)
(let (res)
(dolist (term (s#term ucon) (nreverse res))
(dolist (str (s#str term))
- (push str res)))))
+ (push str res)))))
(defmethod pfstr ((uterm uterm))
(defun rel-abbr-info (rel)
(nth-value 0 (gethash (string-downcase rel) *rel-info-table*)))
-(defun filter-urels-by-rel (urels rel)
- (remove-if-not (lambda (urel) (string-equal rel (rel urel))) urels))
+(defun filter-urels-by-rel (urels rel &key (remove-duplicate-pfstr2 t) (sort :pfstr2))
+ (let ((f (remove-if-not (lambda (urel) (string-equal rel (rel urel))) urels)))
+ (when remove-duplicate-pfstr2
+ (setq f (remove-duplicates f :test 'equal :key 'u::pfstr2)))
+ (if sort
+ (sort (copy-seq f) 'string-lessp :key 'u::pfstr2)
+ f)))
+
+#+mrcoc
+(defun filter-ucocs (ucocs &key (remove-duplicate-pfstr2 t) (sort :pfstr2))
+ (when remove-duplicate-pfstr2
+ (setq ucocs (remove-duplicates ucocs :test 'equal :key 'u::pfstr2)))
+ (if sort
+ (sort (copy-seq ucocs) 'string-lessp :key 'u::pfstr2)
+ ucocs))
(defvar +language-abbreviations+
(setq stt (subseq stt 1)))
(loop for c across stt
collect
- (cond
- ((char-equal #\C c)
- "Upper/lower case")
- ((char-equal #\W c)
- "Word order")
- ((char-equal #\S c)
- "Singular")
- ((char-equal #\P c)
- "Plural")
- ((char-equal #\O c)
- "Other"))))
-
-
-(defun ucon-parents (ucon &key sab include-rb)
- (ucon-ancestors ucon :sab sab :include-rb include-rb
- :ancestors nil))
-
-(defun is-ucon-in-ancestors (ucon ancestors)
- (cond
- ((null ancestors) nil)
- ((atom ancestors) (eql (cui ucon) (cui ancestors)))
- ((listp (car ancestors))
- (or (is-ucon-in-ancestors ucon (car ancestors))
- (is-ucon-in-ancestors ucon (cdr ancestors))))
- (t
- (or (eql (cui ucon) (cui (car ancestors)))
- (is-ucon-in-ancestors ucon (cdr ancestors))))))
-
-
-(defun ucon-ancestors (ucon &key sab include-rb ancestors)
- "Returns a list of ancestor lists for a concept"
- (let* ((parent-rels (append (filter-urels-by-rel (s#rel ucon) "par")
- (when include-rb
- (filter-urels-by-rel (s#rel ucon) "rb"))))
- (parents nil))
- (when sab
- (setq parent-rels (delete-if-not
- (lambda (rel) (string-equal sab (sab rel)))
- parent-rels)))
- (dolist (rel parent-rels)
- (let ((parent (find-ucon-cui (cui2 rel))))
- ;; (format t "~S ~S ~S ~S~%" rel ucon parent ancestors)
- (unless (is-ucon-in-ancestors parent ancestors)
- (push
- (list*
- parent
- (ucon-ancestors parent :sab (sab rel) :ancestors (append (list parent) ancestors)))
- parents))))
- (nreverse parents)))
-
-
-(defun find-minimum-distance (anc1 anc2 &key (distance 0) (minimum 0) path)
- (cond
- ((or (null anc1) (null anc2) nil)
- ((and (atom (car anc1)) (atom (car anc2)))
- (when (eql (cui ucon1) (cui ucon2))
- (return-from find-minimum-distance (values distance path)))
- (incf distance)
- (when (> distance minimum)
- (return-from find-minimum-distance nil))
- (multiple-value-bind (dist1 path1)
- (find-minimum-distance anc1 (cdr anc2)
- :distance distance :minimum minimum
- :path (list* anc1 path))
- (when (and dist1 (< dist1 minimum))
- (setf minimum dist1
- path path1)))
- (multiple-value-bind (dist2 path2)
- (find-minimum-distance (cdr anc1) anc2
- :distance distance :minimum minimum
- :path (list* anc2 path))
- (when (and dist2 (< dist2 minimum))
- (setf minimum dist2
- path path2)))
- (return-from find-minimum-distance (values distance path))
-
-
- (min2 (find-minimum-distance
- (cdr anc1) anc2
- :distance distance :minimum minimum
- :path (list* anc2 path))))
-
- (when (and min2 (< min2 minimum))
- (setf minimum min2
- path (list* anc2 path)))))
-
-
- )
-
-(defun ucon-cdist (ucon1 ucon2 &key include-rb sab)
- "Compute James Cimino's CDist metric"
- (let ((anc1 (ucon-ancestors ucon1 :include-rb include-rb :sab sab))
- (anc2 (ucon-ancestors ucon2 :include-rb include-rb :sab sab)))
- (find-minimum-distance (list ucon1 anc1) (list ucon2 anc2))))
-
-
-(defgeneric cxt-ancestors (obj))
-(defmethod cxt-ancestors ((con ucon))
- (loop for term in (s#term con)
- append (cxt-ancestors term)))
-
-
-(defmethod cxt-ancestors ((term uterm))
- (loop for str in (s#str term)
- append (cxt-ancestors str)))
-
-(defmethod cxt-ancestors ((str ustr))
- "Return the ancestory contexts of a ustr"
- (let* ((anc (remove-if-not
- (lambda (cxt) (string-equal "ANC" (cxl cxt)))
- (s#cxt str)))
- (num-contexts (if anc
- (apply #'max (mapcar (lambda (cxt) (cxn cxt)) anc))
- 0))
- (anc-lists '()))
- (dotimes (i num-contexts (nreverse anc-lists))
- (let* ((anc-this-cxn (remove-if-not
- (lambda (cxt) (= (1+ i) (cxn cxt))) anc)))
- (push
- (sort anc-this-cxn (lambda (a b) (< (rank a) (rank b))))
- anc-lists)))))
+ (cond
+ ((char-equal #\C c)
+ "Upper/lower case")
+ ((char-equal #\W c)
+ "Word order")
+ ((char-equal #\S c)
+ "Singular")
+ ((char-equal #\P c)
+ "Plural")
+ ((char-equal #\O c)
+ "Other"))))
(defun uso-unique-codes (usos)
(let ((sab-codes (make-hash-table :test 'equal)))
(loop for key being the hash-key in sab-codes
collect (list key (gethash key sab-codes)))))
-
(defun ucon-has-sab (ucon sab)
(and (find-if (lambda (uso) (string-equal sab (sab uso))) (s#so ucon)) t))
#+scl
-(dolist (c '(urank udef usat uso ucxt ustr ulo uterm usty urel ucoc uatx ucon uxw uxnw uxns lexterm labr lagr lcmp lmod lnom lprn lprp lspl ltrm ltyp lwd sdef sstr sstre1 sstre2 usrl))
+(dolist (c '(urank udef usat uso ucxt ustr uterm usty urel
+ #+mrcoc ucoc
+ uatx uconso uxw uxnw uxns lexterm labr lagr lcmp lmod lnom lprn lprp lspl ltrm ltyp lwd sdef sstr sstre1 sstre2 usrl))
(let ((cl (find-class c)))
(clos:finalize-inheritance cl)))
-
-
projects / umlisp.git / blobdiff