r11412: warn on empty files -- occurs when subsetting UMLS

[umlisp.git] / class-support.lisp

diff --git a/class-support.lisp b/class-support.lisp
index c14291d7607e9552f1a878a046e5bd95bb21ec19..69983a621434a642ecb603a6ee7b65a95b755bc2 100644 (file)
--- a/class-support.lisp
+++ b/class-support.lisp
@@ -10,7 +10,7 @@
 ;;;; $Id$
 ;;;;
 ;;;; This file, part of UMLisp, is
-;;;;    Copyright (c) 2000-2004 by Kevin M. Rosenberg, M.D.
+;;;;    Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
 ;;;;
 ;;;; UMLisp users are granted the rights to distribute and use this software
 ;;;; as governed by the terms of the GNU General Public License.
@@ -24,8 +24,12 @@
 (defmethod fmt-cui ((c ucon))
   (fmt-cui (cui c)))
 
-(defmethod fmt-cui ((c fixnum))
-  (prefixed-fixnum-string c #\C 7))
+(when *has-fixnum-class*
+  (defmethod fmt-cui ((c fixnum))
+    (prefixed-fixnum-string c #\C 7)))
+
+(defmethod fmt-cui ((c integer))
+    (prefixed-integer-string c #\C 7))
 
 (defmethod fmt-cui ((c string))
   (if (eql (aref c 0) #\C)
@@ -39,8 +43,12 @@
 (defmethod fmt-lui ((l uterm))
   (fmt-lui (lui l)))
 
-(defmethod fmt-lui ((l fixnum))
-  (prefixed-fixnum-string l #\L 7))
+(when *has-fixnum-class*
+  (defmethod fmt-lui ((l fixnum))
+    (prefixed-fixnum-string l #\L 7)))
+
+(defmethod fmt-lui ((l integer))
+  (prefixed-integer-string l #\L 7))
 
 (defmethod fmt-lui ((l string))
   (if (eql (aref l 0) #\L)
@@ -51,8 +59,12 @@
 (defmethod fmt-sui ((s ustr))
   (fmt-sui (sui s)))
 
-(defmethod fmt-sui ((s fixnum))
-  (prefixed-fixnum-string s #\S 7))
+(when *has-fixnum-class*
+  (defmethod fmt-sui ((s fixnum))
+    (prefixed-fixnum-string s #\S 7)))
+
+(defmethod fmt-sui ((s integer))
+  (prefixed-integer-string s #\S 7))
 
 (defmethod fmt-sui ((s string))
   (if (eql (aref s 0) #\S)
@@ -60,8 +72,12 @@
       (fmt-sui (parse-integer s))))
 
 (defgeneric fmt-tui (tui))
-(defmethod fmt-tui ((tui fixnum))
-  (prefixed-fixnum-string tui #\T 3))
+(when *has-fixnum-class*
+  (defmethod fmt-tui ((tui fixnum))
+    (prefixed-fixnum-string tui #\T 3)))
+
+(defmethod fmt-tui ((tui integer))
+  (prefixed-integer-string tui #\T 3))
 
 (defmethod fmt-tui ((tui string))
   (if (eql (aref tui 0) #\T)
@@ -69,17 +85,42 @@
     (fmt-tui (parse-integer tui))))
 
 (defgeneric fmt-aui (aui))
-(defmethod fmt-aui ((aui fixnum))
-  (prefixed-fixnum-string aui #\A 7))
+(when *has-fixnum-class*
+  (defmethod fmt-aui ((aui fixnum))
+    (if (>= aui 10000000)
+      (prefixed-fixnum-string aui #\A 8)
+      (prefixed-fixnum-string aui #\A 7))))
+
+(defmethod fmt-aui ((aui integer))
+  (if (>= aui 10000000)
+    (prefixed-integer-string aui #\A 8)
+    (prefixed-integer-string aui #\A 7)))
 
 (defmethod fmt-aui ((aui string))
   (if (eql (aref aui 0) #\A)
       aui
       (fmt-aui (parse-integer aui))))
 
+(defgeneric fmt-rui (rui))
+(when *has-fixnum-class*
+  (defmethod fmt-rui ((rui fixnum))
+    (prefixed-fixnum-string rui #\A 8)))
+
+(defmethod fmt-rui ((rui integer))
+  (prefixed-integer-string rui #\A 8))
+
+(defmethod fmt-rui ((rui string))
+  (if (eql (aref rui 0) #\R)
+      rui
+    (fmt-rui (parse-integer rui))))
+
 (defgeneric fmt-eui (e))
-(defmethod fmt-eui ((e fixnum))
-  (prefixed-fixnum-string e #\E 7))
+(when *has-fixnum-class*
+  (defmethod fmt-eui ((e fixnum))
+    (prefixed-fixnum-string e #\E 7)))
+
+(defmethod fmt-eui ((e integer))
+  (prefixed-integer-string e #\E 7))
 
 (defmethod fmt-eui ((e string))
   (if (eql (aref e 0) #\E)
@@ -194,7 +235,7 @@
     (dolist (term (s#term ucon) (nreverse res))
       (dolist (str (s#str term))
        (push str res)))))
-                    
+
 
 (defmethod pfstr ((uterm uterm))
   "Return the preferred string for a uterm"
@@ -294,36 +335,17 @@
         ((char-equal #\O c)
          "Other"))))
 
-           
-(defun ucon-parents (con &optional sab)
-  (ucon-ancestors con sab t))
-
-(defun ucon-ancestors (ucon &optional sab single-level)
-  "Returns a list of ancestor lists for a concept"
-  (let* ((parent-rels (filter-urels-by-rel (s#rel ucon) "par"))
-        (anc nil))
-    (when sab
-      (setq parent-rels (delete-if-not 
-                        (lambda (rel) (string-equal sab (sab rel)))
-                        parent-rels)))
-    (dolist (rel parent-rels (nreverse anc))
-      (let ((parent (find-ucon-cui (cui2 rel))))
-       (push
-        (if single-level
-            (list parent)
-          (list* parent (car (ucon-ancestors parent (sab rel) nil))))
-        anc)))))
 
 (defgeneric cxt-ancestors (obj))
 (defmethod cxt-ancestors ((con ucon))
   (loop for term in (s#term con)
       append (cxt-ancestors term)))
-                   
+
 
 (defmethod cxt-ancestors ((term uterm))
   (loop for str in (s#str term)
       append (cxt-ancestors str)))
-    
+
 (defmethod cxt-ancestors ((str ustr))
   "Return the ancestory contexts of a ustr"
   (let* ((anc (remove-if-not
@@ -340,7 +362,17 @@
         (sort anc-this-cxn (lambda (a b) (< (rank a) (rank b))))
         anc-lists)))))
 
-  
+(defun uso-unique-codes (usos)
+  (let ((sab-codes (make-hash-table :test 'equal)))
+    (dolist (uso usos)
+      (setf (gethash (sab uso) sab-codes) (code uso)))
+    (loop for key being the hash-key in sab-codes
+        collect (list key (gethash key sab-codes)))))
+
+(defun ucon-has-sab (ucon sab)
+  (and (find-if (lambda (uso) (string-equal sab (sab uso))) (s#so ucon)) t))
+
+
 #+scl
 (dolist (c '(urank udef usat uso ucxt ustr ulo uterm usty urel ucoc uatx ucon uxw uxnw uxns lexterm labr lagr lcmp lmod lnom lprn lprp lspl ltrm ltyp lwd sdef sstr sstre1 sstre2 usrl))
     (let ((cl (find-class c)))