;;;; $Id$
;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2004 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
(:default-print-slots sab srl)
(:description "Custom Table: Source Restriction Level"))
-
+
(defclass urank (umlsclass)
((rank :value-type fixnum :initarg :rank :reader rank)
(sab :value-type string :initarg :sab :reader sab)
(tty :value-type string :initarg :tty :reader tty)
- (supres :value-type string :initarg :supres :reader supres))
+ (suppres :value-type string :initarg :suppres :reader suppres))
(:metaclass hyperobject-class)
(:user-name "Rank")
- (:default-print-slots rank sab tty supres))
+ (:default-print-slots rank sab tty suppres))
(defclass udef (umlsclass)
((def :value-type cdata :initarg :def :reader def)
- (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab))
+ (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
+ (suppress :value-type string :initarg :suppress :reader suppress))
(:metaclass hyperobject-class)
(:user-name "Definition")
(:default-print-slots sab def))
(lat :value-type string :initarg :lat :reader lat)
(cenc :value-type string :initarg :cenc :reader cenc)
(curver :value-type string :initarg :curver :reader curver)
- (sabin :value-type string :initarg :sabin :reader sabin))
+ (sabin :value-type string :initarg :sabin :reader sabin)
+ (ssn :value-type string :initarg :ssn :reader ssn)
+ (scit :value-type string :initarg :scit :reader scit))
(:metaclass hyperobject-class)
(:user-name "Source Abbreviation")
(:default-print-slots vcui rcui vsab rsab son sf sver vstart vend imeta
rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc
- curver sabin))
+ curver sabin ssn scit))
(defclass ucxt (umlsclass)
((sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(code :value-type string :initarg :code :reader code)
(cxn :value-type fixnum :initarg :cxn :reader cxn)
(cxl :value-type string :initarg :cxl :reader cxl)
+ (rank :value-type string :initarg :rank :reader rank)
(cxs :value-type cdata :initarg :cxs :reader cxs)
(cui2 :value-type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-cui
:print-formatter fmt-cui)
+ (aui2 :value-type fixnum :initarg :aui2 :reader aui2 :hyperlink find-ucon-aui
+ :print-formatter fmt-aui)
(hcd :value-type string :initarg :hcd :reader hcd)
(rela :value-type string :initarg :rela :reader rela)
- (xc :value-type string :initarg :xc :reader xc))
+ (xc :value-type string :initarg :xc :reader xc)
+ (cvf :value-type string :initarg :cvf :reader cvf))
+ (:metaclass hyperobject-class)
+ (:user-name "Context")
+ (:default-print-slots sab code cxn cxl hcd rela xc cui2 cxs))
+
+(defclass uhier (umlsclass)
+ ((cui :value-type fixnum :initarg :cui :reader cui :hyperlink find-ucon-cui
+ :print-formatter fmt-cui)
+ (aui :value-type fixnum :initarg :aui :reader aui :hyperlink find-ucon-aui
+ :print-formatter fmt-aui)
+ (cxn :value-type fixnum :initarg :cxn :reader cxn)
+ (paui :value-type fixnum :initarg :paui :reader paui
+ :print-formatter fmt-aui)
+ (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
+ (rela :value-type string :initarg :rela :reader rela)
+ (ptr :value-type string :initarg :ptr :reader ptr)
+ (hcd :value-type string :initarg :hcd :reader hcd)
+ (cvf :value-type string :initarg :cvf :reader cvf))
(:metaclass hyperobject-class)
(:user-name "Context")
- (:default-print-slots sab code rnk cxn cxl hcd rela xc cui2 cxs))
+ (:default-print-slots cxn paui sab rela ptr hcd))
(defclass ustr (umlsclass)
((sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui
(str :value-type cdata :initarg :str :reader str)
(lrl :value-type fixnum :initarg :lrl :reader lrl)
(stt :value-type string :initarg :stt :reader stt)
+ (suppress :value-type string :initarg :suppress :reader suppress)
(s#so :reader s#so :subobject (find-uso-cuisui cui sui))
(s#sat :reader s#sat :subobject (find-usat-ui cui lui sui))
(s#cxt :reader s#cxt :subobject (find-ucxt-cuisui cui sui)))
(:metaclass hyperobject-class)
(:user-name "String")
- (:default-print-slots sui stt lrl str))
+ (:default-print-slots sui stt lrl str suppress))
+
(defclass uso (umlsclass)
- ((aui :value-type fixnum :initarg :aui :reader aui :print-formatter fmt-aui)
+ ((aui :value-type fixnum :initarg :aui :reader aui :print-formatter fmt-aui
+ :hyperlink find-ucon-aui)
(cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
:hyperlink find-ucon-cui)
(sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui
(sdui :value-type string :initarg :sdui :reader sdui)
(scui :value-type string :initarg :scui :reader scui)
(tty :value-type string :initarg :tty :reader tty :hyperlink find-btty-tty)
- (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(code :value-type string :initarg :code :reader code)
+ (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
+ (lat :value-type string :initarg :lat :reader lat)
+ (str :value-type cdata :initarg :str :reader str)
(srl :value-type fixnum :initarg :srl :reader srl))
(:metaclass hyperobject-class)
(:user-name "Source")
(defclass urel (umlsclass)
((rel :value-type string :initarg :rel :reader rel :hyperlink find-brel-rel)
(cui1 :value-type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
+ (aui1 :value-type fixnum :initarg :aui1 :reader aui1 :print-formatter fmt-aui)
+ (stype1 :value-type string :initarg :stype1 :reader stype1)
(cui2 :value-type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-sui
:print-formatter fmt-cui)
+ (aui2 :value-type fixnum :initarg :aui2 :reader aui2 :hyperlink find-ucon-aui
+ :print-formatter fmt-aui)
(pfstr2 :value-type cdata :initarg :pfstr2 :reader pfstr2)
+ (stype2 :value-type string :initarg :stype2 :reader stype2)
(rela :value-type string :initarg :rela :reader rela)
+ (rui :value-type fixnum :initarg :rui :reader rui :print-formatter fmt-rui)
+ (srui :value-type string :initarg :srui :reader srui)
(sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
- (sl :value-type string :initarg :sl :reader sl))
+ (sl :value-type string :initarg :sl :reader sl)
+ (rg :value-type string :initarg :rg :reader rg)
+ (dir :value-type string :initarg :dir :reader dir)
+ (suppress :value-type string :initarg :suppress :reader suppress)
+ (cvf :value-type string :initarg :cvf :reader cvf))
(:metaclass hyperobject-class)
(:user-name "Relationship")
- (:default-print-slots rel rela sab sl mg cui2 pfstr2))
-
+ (:default-print-slots stype1 rel cui2 aui2 stype2 rela rui srui sab sl rg dir suppress pfstr2))
+
(defclass ucoc (umlsclass)
((cui1 :value-type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
+ (aui1 :value-type fixnum :initarg :aui1 :reader aui1 :print-formatter fmt-aui)
(cui2 :value-type fixnum :initarg :cui2 :reader cui2 :print-formatter fmt-cui
:hyperlink find-ucon-cui)
+ (aui2 :value-type fixnum :initarg :aui2 :reader aui2 :print-formatter fmt-aui
+ :hyperlink find-ucon-aui)
(pfstr2 :value-type cdata :initarg :pfstr2 :reader pfstr2)
+ (sab :value-type string :initarg :sab :reader sab)
(cot :value-type string :initarg :cot :reader cot)
(cof :value-type fixnum :initarg :cof :reader cof)
- (coa :value-type cdata :initarg :coa :reader coa))
+ (coa :value-type cdata :initarg :coa :reader coa)
+ (cvf :value-type string :initarg :cvf :reader cvf))
(:metaclass hyperobject-class)
(:user-name "Co-occuring Concept")
- (:default-print-slots soc cot cof coa cui2 pfstr2))
+ (:default-print-slots cot cof coa cui2 aui2 sab pfstr2))
-
(defclass ucon (umlsclass)
((cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
:hyperlink find-ucon-cui)
- (lrl :value-type fixnum :initarg :lrl :reader lrl)
- (pfstr :value-type cdata :initarg :pfstr :reader pfstr)
+ (lrl :value-type fixnum :initarg :lrl :reader lrl
+ :subobject (find-lrl-cui cui))
+ (pfstr :value-type cdata :initarg :pfstr :reader pfstr
+ :subobject (find-pfstr-cui cui))
(s#def :reader s#def :subobject (find-udef-cui cui))
+ (s#so :reader s#so :subobject (find-uso-cui cui))
+ (s#hier :reader s#hier :subobject (find-uhier-cui cui))
+ (s#map :reader s#map :subobject (find-umap-cui cui))
+ (s#smap :reader s#smap :subobject (find-usmap-cui cui))
(s#sty :reader s#sty :subobject (find-usty-cui cui))
(s#lo :reader s#lo :subobject (find-ulo-cui cui))
(s#term :reader s#term :subobject (find-uterm-cui cui))
(:user-name "Concept")
(:default-print-slots cui lrl pfstr))
+(defclass umap (umlsclass)
+ ((mapsetcui :value-type fixnum :initarg :mapsetcui :reader mapsetcui)
+ (mapsetsab :value-type string :initarg :mapsetsab :reader mapsetsab)
+ (mapsubsetid :value-type string :initarg :mapsubsetid :reader mapsubsetid)
+ ;; fixme: will convert to integer
+ (maprank :value-type string :initarg :maprank :reader maprank)
+ (fromid :value-type string :initarg :fromid :reader fromid)
+ (fromsid :value-type string :initarg :fromsid :reader fromsid)
+ (fromexpr :value-type string :initarg :fromexpr :reader fromexpr)
+ (fromtype :value-type string :initarg :fromtype :reader fromtype)
+ (fromrule :value-type string :initarg :fromrule :reader fromrule)
+ (fromres :value-type string :initarg :fromres :reader fromres)
+ (rel :value-type string :initarg :rel :reader rel)
+ (rela :value-type string :initarg :rela :reader rela)
+ (toid :value-type string :initarg :toid :reader toid)
+ (tosid :value-type string :initarg :tosid :reader tosid)
+ (toexpr :value-type string :initarg :toexpr :reader toexpr)
+ (totype :value-type string :initarg :totype :reader totype)
+ (torule :value-type string :initarg :torule :reader torule)
+ (tores :value-type string :initarg :tores :reader tores)
+ (maprule :value-type string :initarg :maprule :reader maprule)
+ (maptype :value-type string :initarg :maptype :reader maptype)
+ (mapatn :value-type string :initarg :mapatn :reader mapatn)
+ (mapatv :value-type string :initarg :mapatv :reader mapatv)
+ (cvf :value-type string :initarg :cvf :reader cvf))
+ (:metaclass hyperobject-class)
+ (:user-name "Mapping")
+ (:default-print-slots mapsetcui mapsetsab mapsubsetid maprank fromid fromsid fromexpr fromtype
+ fromrule fromres rel rela toid tosid toexpr totype torule tores maprule
+ maptype mapatn mapatv))
+
+(defclass usmap (umlsclass)
+ ((mapsetcui :value-type fixnum :initarg :mapsetcui :reader mapsetcui)
+ (mapsetsab :value-type string :initarg :mapsetsab :reader mapsetsab)
+ (fromexpr :value-type string :initarg :fromexpr :reader fromexpr)
+ (fromtype :value-type string :initarg :fromtype :reader fromtype)
+ (rel :value-type string :initarg :rel :reader rel)
+ (rela :value-type string :initarg :rela :reader rela)
+ (toexpr :value-type string :initarg :toexpr :reader toexpr)
+ (totype :value-type string :initarg :totype :reader totype)
+ (cvf :value-type string :initarg :cvf :reader cvf))
+ (:metaclass hyperobject-class)
+ (:user-name "Simple Mapping")
+ (:default-print-slots mapsetcui mapsetsab fromexpr fromtype rel rela toexpr totype))
+
(defclass uxw (umlsclass)
((wd :value-type string :initarg :wd :reader wd)
(cui :value-type fixnum :initform nil :initarg :cui :reader cui :print-formatter fmt-cui)
(:user-name "XNS Index" "XNS Indices")
(:default-print-slots lat nstr cuilist))
+(defclass udoc (umlsclass)
+ ((dockey :value-type string :initarg :dockey :reader dockey)
+ (expl :value-type cdata :initarg :expl :reader expl)
+ (dtype :value-type cdata :initarg :dtype :reader dtype)
+ (dvalue :value-type cdata :initarg :dvalue :reader dvalue))
+ (:metaclass hyperobject-class)
+ (:user-name "Documentation record")
+ (:default-print-slots dockey expl dtype dvalue))
+
;;; LEX objects
(:default-print-slots name hits srl)
(:documentation "Custom Table: UMLS Database statistics."))
-
-(defclass bsab (umlsclass)
- ((sab :value-type string :initarg :sab :reader sab
- :hyperlink find-ustr-sab
- :hyperlink-parameters (("subobjects" . "no")))
- (name :value-type string :initarg :name :reader name)
- (hits :value-type fixnum :initarg :hits :reader hits
- :user-name "count"
- :print-formatter fmt-comma-integer))
- (:metaclass hyperobject-class)
- (:default-initargs :sab nil :name nil :hits nil)
- (:user-name "Source of Abbreviation")
- (:default-print-slots sab name hits)
- (:documentation "Bonus SAB file"))
-
-(defclass btty (umlsclass)
- ((tty :value-type string :initarg :tty :reader tty)
- (name :value-type string :initarg :name :reader name)
- (hits :value-type fixnum :initarg :hits :reader hits
- :user-name "count"
- :print-formatter fmt-comma-integer))
- (:metaclass hyperobject-class)
- (:default-initargs :tty nil :name nil :hits nil)
- (:user-name "Bonus TTY")
- (:default-print-slots tty name hits)
- (:documentation "Bonus TTY file"))
-
-(defclass brel (umlsclass)
- ((sab :value-type string :initarg :sab :reader sab)
- (sl :value-type string :initarg :sl :reader sl)
- (rel :value-type string :initarg :rel :reader rel)
- (rela :value-type string :initarg :rela :reader rela)
- (hits :value-type fixnum :initarg :hits :reader hits
- :user-name "count"
- :print-formatter fmt-comma-integer))
- (:metaclass hyperobject-class)
- (:default-initargs :sab nil :sl nil :rel nil :rela nil :hits nil)
- (:user-name "Bonus REL")
- (:default-print-slots sab sl rel rela hits)
- (:documentation "Bonus REL file"))
-
-(defclass batn (umlsclass)
- ((sab :value-type string :initarg :sab :reader sab)
- (atn :value-type string :initarg :atn :reader atn)
- (hits :value-type fixnum :initarg :hits :reader hits
- :user-name "count"
- :print-formatter fmt-comma-intger))
- (:metaclass hyperobject-class)
- (:default-initargs :sab nil :atn nil)
- (:user-name "Bonus ATN")
- (:default-print-slots sab atn hits)
- (:documentation "Bonus ATN file"))
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