;;;; *************************************************************************
;;;; FILE IDENTIFICATION
;;;;
-;;;; Name: classes.lisp
-;;;; Purpose: Class defintions for UMLisp
-;;;; Programmer: Kevin M. Rosenberg
-;;;; Date Started: Apr 2000
-;;;;
-;;;; $Id: classes.lisp,v 1.26 2002/12/14 02:35:28 kevin Exp $
+;;;; Name: classes.lisp
+;;;; Purpose: Class defintions for UMLisp
+;;;; Author: Kevin M. Rosenberg
+;;;; Created: Apr 2000
;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2002 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2010 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
;;;; *************************************************************************
-(in-package :umlisp)
-(declaim (optimize (speed 3) (safety 1) (compilation-speed 0) (debug 3)))
+(in-package #:umlisp)
(defclass umlsclass (hyperobject)
()
((sab :value-type string :initarg :sab :reader sab)
(srl :value-type fixnum :initarg :srl :reader srl))
(:metaclass hyperobject-class)
- (:default-initargs :sab nil :srl nil)
(:user-name "Source Restriction Level")
(:default-print-slots sab srl)
(:description "Custom Table: Source Restriction Level"))
-
+
(defclass urank (umlsclass)
((rank :value-type fixnum :initarg :rank :reader rank)
(sab :value-type string :initarg :sab :reader sab)
(tty :value-type string :initarg :tty :reader tty)
- (supres :value-type string :initarg :supres :reader supres))
+ (suppress :value-type string :initarg :suppress :reader suppress))
(:metaclass hyperobject-class)
- (:default-initargs :rank nil :sab nil :tty nil :supres nil)
(:user-name "Rank")
- (:default-print-slots rank sab tty supres))
+ (:default-print-slots rank sab tty suppress))
(defclass udef (umlsclass)
((def :value-type cdata :initarg :def :reader def)
- (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab))
+ (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
+ (suppress :value-type string :initarg :suppress :reader suppress))
(:metaclass hyperobject-class)
- (:default-initargs :def nil :sab nil)
(:user-name "Definition")
(:default-print-slots sab def))
(atn :value-type string :initarg :atn :reader atn)
(atv :value-type cdata :initarg :atv :reader atv))
(:metaclass hyperobject-class)
- (:default-initargs :sab nil :code nil :atn nil :atv nil)
(:user-name "Simple Attribute")
(:default-print-slots sab code atn atv))
((vcui :value-type fixnum :initarg :vcui :reader vcui :print-formatter fmt-cui)
(rcui :value-type fixnum :initarg :rcui :reader rcui :print-formatter fmt-cui)
(vsab :value-type string :initarg :vsab :reader vsab)
- (rsab :value-type string :initarg :rsab :reader rsab :hyperlink find-ucan-sab)
+ (rsab :value-type string :initarg :rsab :reader rsab :hyperlink find-ustr-sab
+ :hyperlink-parameters (("subobjects" . "no")))
(son :value-type string :initarg :son :reader son)
(sf :value-type string :initarg :sf :reader sf)
(sver :value-type string :initarg :sver :reader sver)
- (mstart :value-type string :initarg :mstart :reader mstart)
- (mend :value-type string :initarg :mend :reader mend)
+ (vstart :value-type string :initarg :vstart :reader vstart)
+ (vend :value-type string :initarg :vend :reader vend)
(imeta :value-type string :initarg :imeta :reader imeta)
(rmeta :value-type string :initarg :rmeta :reader rmeta)
(slc :value-type cdata :initarg :slc :reader slc)
(lat :value-type string :initarg :lat :reader lat)
(cenc :value-type string :initarg :cenc :reader cenc)
(curver :value-type string :initarg :curver :reader curver)
- (sabin :value-type string :initarg :sabin :reader sabin))
+ (sabin :value-type string :initarg :sabin :reader sabin)
+ (ssn :value-type string :initarg :ssn :reader ssn)
+ (scit :value-type string :initarg :scit :reader scit))
(:metaclass hyperobject-class)
- (:default-initargs :vcui nil :rcui nil :vsab nil :rsab nil :son nil :sf nil
- :sver nil :mstart nil :mend nil :imeta nil :rmeta nil
- :slc nil :scc nil :srl nil :tfr nil :cfr nil :cxty nil
- :ttyl nil :atnl nil :lat nil :cenc nil :curver nil
- :sabin nil)
(:user-name "Source Abbreviation")
- (:default-print-slots vcui rcui vsab rsab son sf sver mstart mend imeta
- rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc
- curver sabin))
-
-(defclass uso (umlsclass)
- ((sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
- (code :value-type string :initarg :code :reader code)
- (tty :value-type string :initarg :tty :reader tty :hyperlink find-btty-tty)
- (srl :value-type fixnum :initarg :srl :reader srl))
- (:metaclass hyperobject-class)
- (:default-initargs :sab nil :code nil :tty nil :srl nil)
- (:user-name "Source")
- (:default-print-slots sab code tty srl))
-
-(defclass ucxt (umlsclass)
- ((sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
- (code :value-type string :initarg :code :reader code)
- (rnk :value-type fixnum :initarg :rnk :reader rnk)
+ (:default-print-slots vcui rcui vsab rsab son sf sver vstart vend imeta
+ rmeta slc scc srl tfr cfr cxty ttyl atnl lat cenc
+ curver sabin ssn scit))
+
+(defclass uhier (umlsclass)
+ ((cui :value-type fixnum :initarg :cui :reader cui :hyperlink find-ucon-cui
+ :print-formatter fmt-cui)
+ (aui :value-type fixnum :initarg :aui :reader aui :hyperlink find-ucon-aui
+ :print-formatter fmt-aui)
(cxn :value-type fixnum :initarg :cxn :reader cxn)
- (cxl :value-type string :initarg :cxl :reader cxl)
- (cxs :value-type cdata :initarg :cxs :reader cxs)
- (cui2 :value-type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-cui
- :print-formatter fmt-cui)
- (hcd :value-type string :initarg :hcd :reader hcd)
+ (paui :value-type fixnum :initarg :paui :reader paui
+ :print-formatter fmt-aui)
+ (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(rela :value-type string :initarg :rela :reader rela)
- (xc :value-type string :initarg :xc :reader xc))
+ (ptr :value-type string :initarg :ptr :reader ptr)
+ (hcd :value-type string :initarg :hcd :reader hcd)
+ (cvf :value-type string :initarg :cvf :reader cvf))
(:metaclass hyperobject-class)
- (:default-initargs :sab nil :code nil :rnk nil :cxn nil :cxl nil :cxs nil
- :cui2 nil :hcd nil :rela nil :xc nil)
(:user-name "Context")
- (:default-print-slots sab code rnk cxn cxl hcd rela xc cui2 cxs))
+ (:default-print-slots cxn paui sab rela ptr hcd))
(defclass ustr (umlsclass)
((sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui
- :hyperlink find-ustr-sui)
+ :hyperlink find-ustr-sui)
(cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
- :hyperlink find-ucon-cui)
+ :hyperlink find-ucon-cui)
(lui :value-type fixnum :initarg :lui :reader lui :print-formatter fmt-lui
- :hyperlink find-uterm-lui)
+ :hyperlink find-uterm-lui)
(cuisui :value-type integer :initarg :cuisui :reader cuisui )
(str :value-type cdata :initarg :str :reader str)
(lrl :value-type fixnum :initarg :lrl :reader lrl)
(stt :value-type string :initarg :stt :reader stt)
- (s#sat :reader s#sat :subobject (find-usat-ui cui lui sui))
+ (suppress :value-type string :initarg :suppress :reader suppress)
(s#so :reader s#so :subobject (find-uso-cuisui cui sui))
- (s#cxt :reader s#cxt :subobject (find-ucxt-cuisui cui sui)))
+ (s#sat :reader s#sat :subobject (find-usat-ui cui lui sui)))
(:metaclass hyperobject-class)
- (:default-initargs
- :sui nil :cui nil :lui nil :cuisui nil :str nil :lrl nil :stt nil)
(:user-name "String")
- (:default-print-slots sui stt lrl str))
+ (:default-print-slots sui stt lrl str suppress))
-(defclass ulo (umlsclass)
- ((isn :value-type string :initarg :isn :reader isn)
- (fr :value-type fixnum :initarg :fr :reader fr)
- (un :value-type string :initarg :un :reader un)
- (sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui)
- (sna :value-type string :initarg :sna :reader sna)
- (soui :value-type string :initarg :soui :reader soui))
+
+(defclass uso (umlsclass)
+ ((aui :value-type fixnum :initarg :aui :reader aui :print-formatter fmt-aui
+ :hyperlink find-ucon-aui)
+ (cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
+ :hyperlink find-ucon-cui)
+ (sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui
+ :hyperlink find-ucon-sui)
+ (saui :value-type string :initarg :saui :reader saui)
+ (sdui :value-type string :initarg :sdui :reader sdui)
+ (scui :value-type string :initarg :scui :reader scui)
+ (tty :value-type string :initarg :tty :reader tty)
+ (code :value-type string :initarg :code :reader code)
+ (sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
+ (lat :value-type string :initarg :lat :reader lat)
+ (str :value-type cdata :initarg :str :reader str)
+ (srl :value-type fixnum :initarg :srl :reader srl)
+ (ts :value-type string :initarg :ts :reader ts))
(:metaclass hyperobject-class)
- (:default-initargs :isn nil :fr nil :un nil :sui nil :sna nil :soui nil)
- (:user-name "Locator")
- (:default-print-slots isn fr un sna soui sui))
+ (:user-name "Source")
+ (:default-print-slots aui sab code saui sdui scui tty srl ts))
(defclass uterm (umlsclass)
((lui :value-type fixnum :initarg :lui :reader lui :print-formatter fmt-lui
- :hyperlink find-uterm-lui)
+ :hyperlink find-uterm-lui)
(cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
- :hyperlink find-ucon-cui)
+ :hyperlink find-ucon-cui)
(lat :value-type string :initarg :lat :reader lat)
(ts :value-type string :initarg :ts :reader ts)
(lrl :value-type fixnum :initarg :lrl :reader lrl)
(s#str :reader s#str :subobject (find-ustr-cuilui cui lui))
(s#sat :reader s#sat :subobject (find-usat-ui cui lui)))
(:metaclass hyperobject-class)
- (:default-initargs :lui nil :cui nil :lat nil :ts nil :lrl nil)
(:user-name "Term")
(:default-print-slots lui lat ts lrl))
(defclass usty (umlsclass)
((tui :value-type fixnum :initarg :tui :reader tui :print-formatter fmt-tui
- :hyperlink (find-ucon-tui ("subobjects" "no")))
+ :hyperlink find-ucon-tui
+ :hyperlink-parameters (("subobjects" . "no")))
(sty :value-type string :initarg :sty :reader sty))
(:metaclass hyperobject-class)
- (:default-initargs :tui nil :sty nil)
(:user-name "Semantic Type")
(:default-print-slots tui sty))
(defclass urel (umlsclass)
- ((rel :value-type string :initarg :rel :reader rel :hyperlink find-brel-rel)
+ ((rel :value-type string :initarg :rel :reader rel)
(cui1 :value-type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
- (cui2 :value-type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-sui
- :print-formatter fmt-cui)
+ (aui1 :value-type fixnum :initarg :aui1 :reader aui1 :print-formatter fmt-aui)
+ (stype1 :value-type string :initarg :stype1 :reader stype1)
+ (cui2 :value-type fixnum :initarg :cui2 :reader cui2 :hyperlink find-ucon-cui
+ :print-formatter fmt-cui)
+ (aui2 :value-type fixnum :initarg :aui2 :reader aui2 :hyperlink find-ucon-aui
+ :print-formatter fmt-aui)
(pfstr2 :value-type cdata :initarg :pfstr2 :reader pfstr2)
+ (stype2 :value-type string :initarg :stype2 :reader stype2)
(rela :value-type string :initarg :rela :reader rela)
+ (rui :value-type fixnum :initarg :rui :reader rui :print-formatter fmt-rui)
+ (srui :value-type string :initarg :srui :reader srui)
(sab :value-type string :initarg :sab :reader sab :hyperlink find-usab-rsab)
(sl :value-type string :initarg :sl :reader sl)
- (mg :value-type string :initarg :mg :reader mg))
+ (rg :value-type string :initarg :rg :reader rg)
+ (dir :value-type string :initarg :dir :reader dir)
+ (suppress :value-type string :initarg :suppress :reader suppress)
+ (cvf :value-type string :initarg :cvf :reader cvf))
(:metaclass hyperobject-class)
- (:default-initargs
- :rel nil :cui1 nil :cui2 nil :pfstr2 nil :rela nil :sab nil :sl nil :mg nil)
(:user-name "Relationship")
- (:default-print-slots rel rela sab sl mg cui2 pfstr2))
-
+ (:default-print-slots stype1 rel cui2 aui2 stype2 rela rui srui sab sl rg dir suppress pfstr2))
+
+#+mrcoc
(defclass ucoc (umlsclass)
((cui1 :value-type fixnum :initarg :cui1 :reader cui1 :print-formatter fmt-cui)
+ (aui1 :value-type fixnum :initarg :aui1 :reader aui1 :print-formatter fmt-aui)
(cui2 :value-type fixnum :initarg :cui2 :reader cui2 :print-formatter fmt-cui
- :hyperlink find-ucon-cui)
+ :hyperlink find-ucon-cui)
+ (aui2 :value-type fixnum :initarg :aui2 :reader aui2 :print-formatter fmt-aui
+ :hyperlink find-ucon-aui)
(pfstr2 :value-type cdata :initarg :pfstr2 :reader pfstr2)
- (soc :value-type string :initarg :soc :reader soc)
+ (sab :value-type string :initarg :sab :reader sab)
(cot :value-type string :initarg :cot :reader cot)
(cof :value-type fixnum :initarg :cof :reader cof)
- (coa :value-type cdata :initarg :coa :reader coa))
+ (coa :value-type cdata :initarg :coa :reader coa)
+ (cvf :value-type string :initarg :cvf :reader cvf))
(:metaclass hyperobject-class)
- (:default-initargs
- :cui1 nil :cui2 nil :pfstr2 nil :soc nil :cot nil :cof nil :coa nil)
(:user-name "Co-occuring Concept")
- (:default-print-slots soc cot cof coa cui2 pfstr2))
-
-
-(defclass uatx (umlsclass)
- ((sab :value-type string :initarg :sab :reader sab)
- (rel :value-type string :initarg :rel :reader rel)
- (atx :value-type cdata :initarg :atx :reader atx))
- (:metaclass hyperobject-class)
- (:default-initargs :sab nil :rel nil :atx nil)
- (:user-name "Associated Expression")
- (:default-print-slots sab rel atx))
+ (:default-print-slots cot cof coa cui2 aui2 sab pfstr2))
(defclass ucon (umlsclass)
((cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
- :hyperlink find-ucon-cui)
- (lrl :value-type fixnum :initarg :lrl :reader lrl)
- (pfstr :value-type cdata :initarg :pfstr :reader pfstr)
- (s#term :reader s#term :subobject (find-uterm-cui cui))
+ :hyperlink find-ucon-cui)
+ (lrl :value-type fixnum :initarg :lrl :reader lrl
+ :compute-cached-value (find-lrl-cui cui))
+ (pfstr :value-type cdata :initarg :pfstr :reader pfstr
+ :compute-cached-value (find-pfstr-cui cui))
(s#def :reader s#def :subobject (find-udef-cui cui))
- (s#lo :reader s#lo :subobject (find-ulo-cui cui))
- (s#rel :reader s#rel :subobject (find-urel-cui cui))
- (s#coc :reader s#coc :subobject (find-ucoc-cui cui))
+ (s#so :reader s#so :subobject (find-uso-cui cui))
+ (s#hier :reader s#hier :subobject (find-uhier-cui cui))
+ (s#map :reader s#map :subobject (find-umap-cui cui))
+ (s#smap :reader s#smap :subobject (find-usmap-cui cui))
+ (s#sty :reader s#sty :subobject (find-usty-cui cui))
+ (s#term :reader s#term :subobject (find-uterm-cui cui))
(s#sat :reader s#sat :subobject (find-usat-ui cui))
- (s#atx :reader s#atx :subobject (find-uatx-cui cui))
- (s#sty :reader s#sty :subobject (find-usty-cui cui)))
+ (s#rel :reader s#rel :subobject (find-urel-cui cui))
+ #+mrcoc (s#coc :reader s#coc :subobject (find-ucoc-cui cui))
+ )
(:metaclass hyperobject-class)
- (:default-initargs :cui nil :lrl nil :pfstr nil)
(:user-name "Concept")
(:default-print-slots cui lrl pfstr))
+
+(defclass uconso (umlsclass)
+ ((cui :value-type fixnum :initarg :cui :reader cui :print-formatter fmt-cui
+ :hyperlink find-ucon-cui)
+ (pfstr :value-type cdata :initarg :pfstr :reader pfstr
+ :compute-cached-value (find-pfstr-cui cui))
+ (lat :value-type string :initarg :lat :reader lat)
+ (ts :value-type string :initarg :ts :reader ts)
+ (lui :value-type fixnum :initarg :lui :reader lui :print-formatter fmt-lui)
+ (stt :value-type string :initarg :stt :reader stt)
+ (sui :value-type fixnum :initarg :sui :reader sui :print-formatter fmt-sui)
+ (ispref :value-type string :initarg :ispref :reader ispref)
+ (aui :value-type fixnum :initarg :aui :reader aui :print-formatter fmt-aui)
+ (saui :value-type string :initarg :saui :reader saui)
+ (scui :value-type string :initarg :scui :reader scui)
+ (sdui :value-type string :initarg :sdui :reader sdui)
+ (sab :value-type string :initarg :sab :reader sab)
+ (tty :value-type string :initarg :tty :reader tty)
+ (code :value-type string :initarg :code :reader code)
+ (str :value-type string :initarg :str :reader str)
+ (srl :value-type fixnum :initarg :srl :reader srl)
+ (suppress :value-type string :initarg :suppress :reader suppress)
+ (cvf :value-type string :initarg :cvf :reader cvf)
+ (kpfeng :value-type string :initarg :kpfeng :reader kpfeng)
+ (kcuisui :value-type bigint :initarg :kcuisui :reader kcuisui)
+ (kcuilui :value-type bigint :initarg :kcuilui :reader kcuilui)
+ (kcuilrl :value-type fixnum :initarg :kcuilrl :reader kcuilrl)
+ (kluilrl :value-type fixnum :initarg :kluilrl :reader kluilrl)
+ (ksuilrl :value-type fixnum :initarg :ksuilrl :reader ksuilrl)
+ (s#def :reader s#def :subobject (find-udef-cui cui))
+ (s#so :reader s#so :subobject (find-uso-cui cui))
+ (s#hier :reader s#hier :subobject (find-uhier-cui cui))
+ (s#map :reader s#map :subobject (find-umap-cui cui))
+ (s#smap :reader s#smap :subobject (find-usmap-cui cui))
+ (s#sty :reader s#sty :subobject (find-usty-cui cui))
+ (s#term :reader s#term :subobject (find-uterm-cui cui))
+ (s#sat :reader s#sat :subobject (find-usat-ui cui))
+ (s#rel :reader s#rel :subobject (find-urel-cui cui))
+ #+mrcoc (s#coc :reader s#coc :subobject (find-ucoc-cui cui))
+ )
+ (:documentation "CONSO is a new concept from the RRF files.")
+ (:metaclass hyperobject-class)
+ (:user-name "Concept")
+ (:default-print-slots cui kcuilrl str sab))
+
+(defclass umap (umlsclass)
+ ((mapsetcui :value-type fixnum :initarg :mapsetcui :reader mapsetcui)
+ (mapsetsab :value-type string :initarg :mapsetsab :reader mapsetsab)
+ (mapsubsetid :value-type string :initarg :mapsubsetid :reader mapsubsetid)
+ ;; fixme: will convert to integer
+ (maprank :value-type string :initarg :maprank :reader maprank)
+ (fromid :value-type string :initarg :fromid :reader fromid)
+ (fromsid :value-type string :initarg :fromsid :reader fromsid)
+ (fromexpr :value-type string :initarg :fromexpr :reader fromexpr)
+ (fromtype :value-type string :initarg :fromtype :reader fromtype)
+ (fromrule :value-type string :initarg :fromrule :reader fromrule)
+ (fromres :value-type string :initarg :fromres :reader fromres)
+ (rel :value-type string :initarg :rel :reader rel)
+ (rela :value-type string :initarg :rela :reader rela)
+ (toid :value-type string :initarg :toid :reader toid)
+ (tosid :value-type string :initarg :tosid :reader tosid)
+ (toexpr :value-type string :initarg :toexpr :reader toexpr)
+ (totype :value-type string :initarg :totype :reader totype)
+ (torule :value-type string :initarg :torule :reader torule)
+ (tores :value-type string :initarg :tores :reader tores)
+ (maprule :value-type string :initarg :maprule :reader maprule)
+ (maptype :value-type string :initarg :maptype :reader maptype)
+ (mapatn :value-type string :initarg :mapatn :reader mapatn)
+ (mapatv :value-type string :initarg :mapatv :reader mapatv)
+ (cvf :value-type string :initarg :cvf :reader cvf))
+ (:metaclass hyperobject-class)
+ (:user-name "Mapping")
+ (:default-print-slots mapsetcui mapsetsab mapsubsetid maprank fromid fromsid fromexpr fromtype
+ fromrule fromres rel rela toid tosid toexpr totype torule tores maprule
+ maptype mapatn mapatv))
+
+(defclass usmap (umlsclass)
+ ((mapsetcui :value-type fixnum :initarg :mapsetcui :reader mapsetcui)
+ (mapsetsab :value-type string :initarg :mapsetsab :reader mapsetsab)
+ (fromexpr :value-type string :initarg :fromexpr :reader fromexpr)
+ (fromtype :value-type string :initarg :fromtype :reader fromtype)
+ (rel :value-type string :initarg :rel :reader rel)
+ (rela :value-type string :initarg :rela :reader rela)
+ (toexpr :value-type string :initarg :toexpr :reader toexpr)
+ (totype :value-type string :initarg :totype :reader totype)
+ (cvf :value-type string :initarg :cvf :reader cvf))
+ (:metaclass hyperobject-class)
+ (:user-name "Simple Mapping")
+ (:default-print-slots mapsetcui mapsetsab fromexpr fromtype rel rela toexpr totype))
+
(defclass uxw (umlsclass)
((wd :value-type string :initarg :wd :reader wd)
(cui :value-type fixnum :initform nil :initarg :cui :reader cui :print-formatter fmt-cui)
(lui :value-type fixnum :initform nil :initarg :lui :reader lui :print-formatter fmt-lui)
(sui :value-type fixnum :initform nil :initarg :sui :reader sui :print-formatter fmt-sui))
(:metaclass hyperobject-class)
- (:default-initargs :wd nil :cui nil :lui nil :sui nil)
- (:user-name "XW Index")
+ (:user-name "XW Index" "XW Indices")
+ (:default-print-slots wd cui lui sui))
+
+(defclass uxw-noneng (umlsclass)
+ ((lat :value-type string :initarg :lat :reader lat)
+ (wd :value-type string :initarg :wd :reader wd)
+ (cui :value-type fixnum :initform nil :initarg :cui :reader cui :print-formatter fmt-cui)
+ (lui :value-type fixnum :initform nil :initarg :lui :reader lui :print-formatter fmt-lui)
+ (sui :value-type fixnum :initform nil :initarg :sui :reader sui :print-formatter fmt-sui)
+ (lrl :value-type fixnum :initform nil :initarg :lrl :reader lrl))
+ (:metaclass hyperobject-class)
+ (:user-name "XW Non-English Index" "XW Non-English Indices")
(:default-print-slots wd cui lui sui))
(defclass uxnw (umlsclass)
(nwd :value-type string :initarg :nwd :reader nwd)
(cuilist :value-type list :initarg :cuilist :reader uxnw-cuilist))
(:metaclass hyperobject-class)
- (:default-initargs :lat nil :nwd nil :cuilist nil)
- (:user-name "XNW Index")
+ (:user-name "XNW Index" "XNW Indices")
(:default-print-slots lat nwd cuilist))
(defclass uxns (umlsclass)
(nstr :value-type string :initarg :nstr :reader nstr)
(cuilist :value-type list :initarg :cuilist :reader cuilist))
(:metaclass hyperobject-class)
- (:default-initargs :lat nil :nstr nil :cuilist nil)
- (:user-name "XNS Index")
+ (:user-name "XNS Index" "XNS Indices")
(:default-print-slots lat nstr cuilist))
+(defclass udoc (umlsclass)
+ ((dockey :value-type string :initarg :dockey :reader dockey)
+ (expl :value-type cdata :initarg :expl :reader expl)
+ (dtype :value-type cdata :initarg :dtype :reader dtype)
+ (dvalue :value-type cdata :initarg :dvalue :reader dvalue))
+ (:metaclass hyperobject-class)
+ (:user-name "Documentation record")
+ (:default-print-slots dockey expl dtype dvalue))
+
;;; LEX objects
(defclass lexterm (umlsclass)
((eui :value-type fixnum :initarg :eui :reader eui :print-formatter fmt-eui
- :hyperlink find-lexterm-eui)
+ :hyperlink find-lexterm-eui)
(wrd :value-type string :initarg :wrd :reader wrd)
(s#abr :reader s#abr :subobject (find-labr-eui eui))
(s#agr :reader s#agr :subobject (find-lagr-eui eui))
(s#trm :reader s#trm :subobject (find-ltrm-eui eui))
(s#typ :reader s#typ :subobject (find-ltyp-eui eui)))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :wrd nil)
(:user-name "Lexical Term")
(:default-print-slots eui wrd))
(eui2 :value-type integer :initarg :eui2 :reader eui2 :print-formatter fmt-eui)
(bas2 :value-type string :initarg :bas2 :reader bas2))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :abr nil :eui2 nil :bas2 nil)
- (:user-name "Abbreviations and Acronyms")
+ (:user-name "Abbreviations and Acronym")
(:default-print-slots eui bas abr eui2 bas2))
(defclass lagr (umlsclass)
(cit :value-type string :initarg :cit :reader cit)
(bas :value-type string :initarg :bas :reader bas))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :str nil :sca nil :agr nil :cit nil :bas nil)
(:user-name "Agreement and Inflection")
(:default-print-slots eui str sca agr cit bas))
(sca :value-type string :initarg :sca :reader sca)
(com :value-type string :initarg :com :reader com))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :sca nil :com nil)
(:user-name "Complementation")
(:default-print-slots eui bas sca com))
(psnmod :value-type string :initarg :psnmod :reader psnmod)
(fea :value-type string :initarg :fea :reader fea))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :sca nil :psnmod nil :fea nil)
- (:user-name "Modifiers")
+ (:user-name "Modifier")
(:default-print-slots eui bas sca psnmod fea))
(defclass lnom (umlsclass)
(bas2 :value-type string :initarg :bas2 :reader bas2)
(sca2 :value-type string :initarg :sca2 :reader sca2))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :sca nil :eui2 nil :bas2 nil :sca2 nil)
- (:user-name "Nominalizations")
+ (:user-name "Nominalization")
(:default-print-slots eui bas sca eui2 bas2 sca2))
(defclass lprn (umlsclass)
(qnt :value-type string :initarg :qnt :reader qnt)
(fea :value-type string :initarg :fea :reader fea))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :num nil :gnd nil :cas nil
- :pos nil :qnt nil :fea nil)
- (:user-name "Pronouns")
+ (:user-name "Pronoun")
(:default-print-slots eui bas num gnd cas pos qnt fea))
(defclass lprp (umlsclass)
(sca :value-type string :initarg :sca :reader sca)
(fea :value-type string :initarg :fea :reader fea))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :str nil :sca nil :fea nil)
- (:user-name "Properties")
+ (:user-name "Property" "Properties")
(:default-print-slots eui bas str sca fea))
(spv :value-type string :initarg :spv :reader spv)
(bas :value-type string :initarg :bas :reader bas))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :spv nil :bas nil)
- (:user-name "Spelling Variants")
+ (:user-name "Spelling Variant")
(:default-print-slots eui spv bas))
(bas :value-type string :initarg :bas :reader bas)
(gen :value-type string :initarg :gen :reader gen))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :gen nil)
- (:user-name "Trade Marks")
+ (:user-name "Trade Mark")
(:default-print-slots eui bas gen))
(defclass ltyp (umlsclass)
(sca :value-type string :initarg :sca :reader sca)
(typ :value-type string :initarg :typ :reader typ))
(:metaclass hyperobject-class)
- (:default-initargs :eui nil :bas nil :sca nil :typ nil)
(:user-name "Inflection Type")
(:default-print-slots eui bas sca typ))
((wrd :value-type string :initarg :wrd :reader wrd)
(euilist :value-type list :initarg :euilist :reader euilist))
(:metaclass hyperobject-class)
- (:default-initargs :wrd nil :euilist nil)
- (:user-name "Lexical Word Index")
+ (:user-name "Lexical Word Index" "Lexical Word Indices")
(:default-print-slots wrd euilist))
;;; Semantic NET objects
(abr :value-type string :initarg :abr :reader abr)
(rin :value-type string :initarg :rin :reader rin))
(:metaclass hyperobject-class)
- (:default-initargs
- :rt nil :ui nil :styrl nil :stnrtn nil :def nil :ex nil :un nil :rh nil
- :abr nil :rin nil)
- (:user-name "Basic information about Semantic Types and Relations")
+ (:user-name "Basic information about Semantic Types and Relation")
(:default-print-slots rt ui styrl stnrtn def ex un rh abr rin))
(defclass sstr (umlsclass)
(styrl2 :value-type string :initarg :styrl2 :reader styrl2)
(ls :value-type string :initarg :ls :reader ls))
(:metaclass hyperobject-class)
- (:default-initargs :styrl nil :rl nil :styrl2 nil :ls nil)
(:user-name "Structure of the Network")
(:default-print-slots styrl rl styrl2 ls))
(ui2 :value-type integer :initarg :ui2 :reader ui2 :print-formatter fmt-tui)
(ui3 :value-type integer :initarg :ui3 :reader ui3 :print-formatter fmt-tui))
(:metaclass hyperobject-class)
- (:default-initargs :ui nil :ui2 nil :ui3 nil)
- (:user-name "Fully Inherited Set of Releatons (TUI's)")
+ (:user-name "Fully Inherited Set of Relation (TUIs)"
+ "Fully Inherited Set of Relations (TUIs)")
(:default-print-slots ui ui2 ui3))
(defclass sstre2 (umlsclass)
(rl :value-type string :initarg :ui2 :reader rl)
(sty2 :value-type string :initarg :ui3 :reader sty2))
(:metaclass hyperobject-class)
- (:default-initargs :sty nil :rl nil :sty2 nil)
- (:user-name "Fully Inherited Set of Releatons (strings)")
+ (:user-name "Fully Inherited Set of Relation (strings)"
+ "Fully Inherited Set of Relations (strings)")
(:default-print-slots sty rl sty2))
-;;; Formatting routines
-
-(defgeneric fmt-cui (c))
-(defmethod fmt-cui ((c ucon))
- (format nil "C~7,'0d" (cui c)))
-
-(defmethod fmt-cui ((c fixnum))
- (format nil "C~7,'0d" c))
-
-(defmethod fmt-cui ((c string))
- (if (eql (aref c 0) #\C)
- c
- (format nil "C~7,'0d" (parse-integer c))))
-
-(defmethod fmt-cui ((c null))
- (format nil "nil"))
-
-(defgeneric fmt-lui (c))
-(defmethod fmt-lui ((l uterm))
- (format nil "L~7,'0d" (lui l)))
-
-(defmethod fmt-lui ((l fixnum))
- (format nil "L~7,'0d" l))
-
-(defmethod fmt-lui ((l string))
- (if (eql (aref l 0) #\L)
- l
- (format nil "L~7,'0d" (parse-integer l))))
-
-(defgeneric fmt-sui (s))
-(defmethod fmt-sui ((s ustr))
- (format nil "S~7,'0d" (sui s)))
-
-(defmethod fmt-sui ((s fixnum))
- (format nil "S~7,'0d" s))
-
-(defmethod fmt-sui ((s string))
- (if (eql (aref s 0) #\S)
- s
- (format nil "S~7,'0d" (parse-integer s))))
-
-(defgeneric fmt-tui (t))
-(defmethod fmt-tui ((s fixnum))
- (format nil "T~3,'0d" s))
-
-(defmethod fmt-tui ((s string))
- (if (eql (aref s 0) #\T)
- s
- (format nil "T~3,'0d" (parse-integer s))))
-
-(defgeneric fmt-eui (e))
-(defmethod fmt-eui ((e fixnum))
- (format nil "E~7,'0d" e))
-
-(defmethod fmt-eui ((e string))
- (if (eql (aref e 0) #\E)
- e
- (format nil "E~7,'0d" (parse-integer e))))
-
-(defmethod fmt-eui ((e null))
- (format nil "nil"))
-
-;;; Generic display functions
-
-(eval-when (:compile-toplevel :load-toplevel :execute)
-(defun english-term-p (obj)
- "Returns two values: T/NIL if term is english and T/NIL if obj is a TERM"
- (if (eq (hyperobject::class-name (hyperobject::class-of obj)) 'uterm)
- (values (string-equal (lat obj) "ENG") t)
- (values nil nil))))
-
-(defun english-term-filter (obj)
- "Retrns NIL if object is a term and not english"
- (multiple-value-bind (is-english is-term) (english-term-p obj)
- (or (not is-term) is-english)))
-
-(defun print-umlsclass (obj &key (stream *standard-output*) (category :compact-text)
- (file-wrapper t) (english-only nil) (subobjects nil)
- (refvars nil))
- (view obj :stream stream :category category :subobjects subobjects
- :file-wrapper file-wrapper
- :filter (if english-only nil #'english-term-filter)
- :refvars refvars))
-
-(defmacro define-lookup-display (newfuncname lookup-func)
- "Defines functions for looking up and displaying objects"
- `(defun ,newfuncname (keyval &key (stream *standard-output*) (category :compact-text)
- (file-wrapper t) (english-only nil) (subobjects nil))
- (let ((obj (funcall ,lookup-func keyval)))
- (print-umlsclass obj :stream stream :category category
- :file-wrapper file-wrapper :english-only english-only
- :subobjects subobjects)
- obj)))
-
-(define-lookup-display display-con #'find-ucon-cui)
-(define-lookup-display display-term #'find-uterm-lui)
-(define-lookup-display display-str #'find-ustr-sui)
-
-#+(or scl cmu)
-(dolist (c '(urank udef usat uso ucxt ustr ulo uterm usty urel ucoc uatx ucon uxw uxnw uxns lexterm labr lagr lcmp lmod lnom lprn lprp lspl ltrm ltyp lwd sdef sstr sstre1 sstre2 usrl))
- #+cmu
- (let ((cl (pcl:find-class c)))
- (pcl:finalize-inheritance cl))
- #+scl
- (let ((cl (find-class c)))
- (clos:finalize-inheritance cl)))
+
+;;; **************************
+;;; Local Classes
+;;; **************************
+
+(defclass ustats (umlsclass)
+ ((name :value-type string :initarg :name :reader name)
+ (hits :value-type integer :initarg :hits :reader hits
+ :user-name "count"
+ :print-formatter fmt-comma-integer)
+ (srl :value-type fixnum :initarg :srl :reader srl))
+ (:metaclass hyperobject-class)
+ (:default-initargs :name nil :hits nil :srl nil)
+ (:user-name "UMLS Statistic")
+ (:default-print-slots name hits srl)
+ (:documentation "Custom Table: UMLS Database statistics."))
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