;;;; *************************************************************************
;;;; FILE IDENTIFICATION
;;;;
-;;;; Name: sql-classes.lisp
-;;;; Purpose: Routines for reading UMLS objects from SQL database
-;;;; Author: Kevin M. Rosenberg
-;;;; Date Started: Apr 2000
+;;;; Name: sql-classes.lisp
+;;;; Purpose: Routines for reading UMLS objects from SQL database
+;;;; Author: Kevin M. Rosenberg
+;;;; Created: Apr 2000
;;;;
;;;; $Id$
;;;;
;;;; This file, part of UMLisp, is
-;;;; Copyright (c) 2000-2003 by Kevin M. Rosenberg, M.D.
+;;;; Copyright (c) 2000-2006 by Kevin M. Rosenberg, M.D.
;;;;
;;;; UMLisp users are granted the rights to distribute and use this software
;;;; as governed by the terms of the GNU General Public License.
,%%fields
,@(when %%where (list %%where))
,@(when %%where
- `((typecase ,where-value
- (fixnum
- (concatenate 'string "='" (prefixed-fixnum-string ,where-value #\0 10) "'"))
- (number
- (concatenate 'string "='" (write-to-string ,where-value) "'"))
- (null
- " is null")
- (t
- (format nil ,(if like "'%~A%'" "='~A'") ,where-value)))))
+ `((typecase ,where-value
+ #+ignore
+ (fixnum
+ (concatenate 'string "='" (prefixed-fixnum-string ,where-value #\0 10) "'"))
+ (number
+ (concatenate 'string "='" (write-to-string ,where-value) "'"))
+ (null
+ " is null")
+ (t
+ (format nil ,(if like "'%~A%'" "='~A'") ,where-value)))))
(if ,srl (concatenate 'string ,%%lrl (write-to-string ,srl)) "")
,@(when %%order (list %%order))
,@(when single (list " limit 1")))))
(if where-name
(format nil
(typecase where-value
- (number "=~D")
+ (number "='~D'")
(null " is null")
(t
(if like " like '%~A%""='~A'")))
(defun find-ucon-cui (cui &key (srl *current-srl*))
"Find ucon for a cui"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl cui cui :single t)
+ (collect-umlisp-query (mrconso (kpfstr kcuilrl) srl cui cui :single t)
(make-instance 'ucon :cui cui :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-cui-sans-pfstr (cui &key (srl *current-srl*))
"Find ucon for a cui"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrcon (kcuilrl) srl cui cui :single t)
+ (collect-umlisp-query (mrconso (kcuilrl) srl cui cui :single t)
(make-instance 'ucon :cui cui :lrl (ensure-integer kcuilrl)
:pfstr nil)))
(defun find-pfstr-cui (cui &key (srl *current-srl*))
"Find preferred string for a cui"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrcon (kpfstr) srl cui cui :single t)
+ (collect-umlisp-query (mrconso (kpfstr) srl cui cui :single t)
kpfstr))
+
(defun find-ucon-lui (lui &key (srl *current-srl*))
"Find list of ucon for lui"
(ensure-lui-integer lui)
- (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl lui lui
+ (collect-umlisp-query (mrconso (cui kpfstr kcuilrl) srl lui lui
:distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(defun find-ucon-sui (sui &key (srl *current-srl*))
"Find list of ucon for sui"
(ensure-sui-integer sui)
- (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl sui sui :distinct t)
+ (collect-umlisp-query (mrconso (cui kpfstr kcuilrl) srl sui sui :distinct t)
+ (make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
+ :lrl (ensure-integer kcuilrl))))
+
+(defun find-ucon-aui (aui &key (srl *current-srl*))
+ "Find list of ucon for aui"
+ (ensure-sui-integer aui)
+ (collect-umlisp-query (mrconso (cui kpfstr kcuilrl) srl aui aui :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(ensure-cui-integer cui)
(ensure-sui-integer sui)
(when (and cui sui)
- (collect-umlisp-query (mrcon (kpfstr kcuilrl) srl kcuisui
+ (collect-umlisp-query (mrconso (kpfstr kcuilrl) srl kcuisui
(make-cuisui cui sui))
(make-instance 'ucon :cui cui
:pfstr kpfstr
(defun find-ucon-str (str &key (srl *current-srl*))
"Find ucon that are exact match for str"
- (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl str str :distinct t)
+ (collect-umlisp-query (mrconso (cui kpfstr kcuilrl) srl str str :distinct t)
(make-instance 'ucon :cui (ensure-integer cui) :pfstr kpfstr
:lrl (ensure-integer kcuilrl))))
(with-sql-connection (db)
(clsql:map-query
'list
- #'(lambda (cui pfstr cuilrl)
- (make-instance 'ucon :cui (ensure-integer cui)
- :pfstr pfstr
- :lrl (ensure-integer cuilrl)))
- (query-string mrcon (cui kpfstr kcuilrl) srl nil nil
+ #'(lambda (tuple)
+ (destructuring-bind (cui pfstr cuilrl) tuple
+ (make-instance 'ucon :cui (ensure-integer cui)
+ :pfstr pfstr
+ :lrl (ensure-integer cuilrl))))
+ (query-string mrconso (cui kpfstr kcuilrl) srl nil nil
:order (cui asc) :distinct t)
:database db)))
(defun find-ucon-all2 (&key (srl *current-srl*))
"Return list of all ucon's"
- (collect-umlisp-query (mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
+ (collect-umlisp-query (mrconso (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
:distinct t)
(make-instance 'ucon :cui (ensure-integer cui)
:pfstr kpfstr
(defun find-cui-ucon-all (&key (srl *current-srl*))
"Return list of CUIs for all ucons"
- (collect-umlisp-query (mrcon (cui) srl nil nil :order (cui asc)
+ (collect-umlisp-query (mrconso (cui) srl nil nil :order (cui asc)
:distinct t)
cui))
(with-sql-connection (db)
(clsql:map-query
nil
- #'(lambda (cui pfstr cuilrl)
- (funcall fn
- (make-instance 'ucon :cui (ensure-integer cui)
- :pfstr pfstr
- :lrl (ensure-integer cuilrl))))
- (query-string mrcon (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
+ #'(lambda (tuple)
+ (destructuring-bind (cui pfstr cuilrl) tuple
+ (funcall fn (make-instance 'ucon :cui (ensure-integer cui)
+ :pfstr pfstr
+ :lrl (ensure-integer cuilrl)))))
+ (query-string mrconso (cui kpfstr kcuilrl) srl nil nil :order (cui asc)
:distinct t)
:database db)))
(defun find-udef-cui (cui &key (srl *current-srl*))
"Return a list of udefs for cui"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrdef (sab def) srl cui cui :lrl "KSRL")
- (make-instance 'udef :sab sab :def def)))
+ (collect-umlisp-query (mrdef (sab def suppress) srl cui cui :lrl "KSRL")
+ (make-instance 'udef :sab sab :def def :suppress suppress)))
+
+(defun find-udoc-key (key)
+ "Return list of abbreviation documentation for a key"
+ (collect-umlisp-query (mrdoc (value type expl) nil dockey key)
+ (make-instance 'udoc :key key :value value :type type :expl expl)))
+
+(defun find-udoc-value (value)
+ "Return abbreviation documentation"
+ (collect-umlisp-query (mrdoc (dockey type expl) nil value value)
+ (make-instance 'udoc :key dockey :value value :type type :expl expl)))
+
+(defun find-udoc-key-value (key value)
+ (let ((tuple (car (mutex-sql-query
+ (format nil "SELECT TYPE,EXPL FROM MRDOC WHERE DOCKEY='~A' AND VALUE='~A'"
+ key value)))))
+ (when tuple
+ (make-instance 'udoc :key key :value value :type (first tuple) :expl (second tuple)))))
+
+(defun find-udoc-all ()
+ "Return all abbreviation documentation"
+ (collect-umlisp-query (mrdoc (dockey value type expl) nil nil nil)
+ (make-instance 'udoc :key dockey :value value :type type :expl expl)))
(defun find-usty-cui (cui &key (srl *current-srl*))
"Return a list of usty for cui"
(defun find-urel-cui (cui &key (srl *current-srl*))
"Return a list of urel for cui"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrrel (rel cui2 rela sab sl mg kpfstr2) srl cui1
- cui :lrl "KSRL")
- (make-instance 'urel :cui1 cui :rel rel
- :cui2 (ensure-integer cui2) :rela rela :sab sab :sl sl
- :mg mg :pfstr2 kpfstr2)))
+ (collect-umlisp-query (mrrel (aui1 rel stype1 cui2 aui2 stype2 rela rui srui sab sl rg dir suppress cvf kpfstr2)
+ srl cui1 cui :lrl "KSRL")
+ (make-instance 'urel :cui1 cui :aui1 (ensure-integer aui1) :stype1 stype1 :rel rel
+ :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2) :stype2 stype2
+ :rui rui :srui srui :rela rela :sab sab :sl sl :rg rg :dir dir
+ :suppress suppress :cvf cvf :pfstr2 kpfstr2)))
(defun find-cui2-urel-cui (cui &key (srl *current-srl*))
"Return a list of urel for cui"
(defun find-urel-cui2 (cui2 &key (srl *current-srl*))
"Return a list of urel for cui2"
(ensure-cui-integer cui2)
- (collect-umlisp-query (mrrel (rel cui1 rela sab sl mg kpfstr2) srl cui2
- cui2 :lrl "KSRL")
- (make-instance 'urel :cui2 cui2 :rel rel
- :cui1 (ensure-integer cui1) :rela rela :sab sab :sl sl
- :mg mg :pfstr2 kpfstr2)))
+ (collect-umlisp-query (mrrel (rel cui1 aui1 stype1 aui2 stype2 rela rui srui sab sl rg dir suppress cvf kpfstr2)
+ srl cui2 cui2 :lrl "KSRL")
+ (make-instance 'urel :cui2 cui2 :rel rel :aui2 (ensure-integer aui2) :stype2 stype2 :rui rui :srui srui
+ :stype1 stype1 :cui1 (ensure-integer cui1) :aui1 (ensure-integer aui1)
+ :rela rela :sab sab :sl sl :rg rg :dir dir :suppress suppress :cvf cvf
+ :pfstr2 kpfstr2)))
(defun find-ucon-rel-cui2 (cui2 &key (srl *current-srl*))
(ensure-cui-integer cui2)
(defun find-ucoc-cui (cui &key (srl *current-srl*))
"Return a list of ucoc for cui"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrcoc (cui2 soc cot cof coa kpfstr2) srl cui1
+ (collect-umlisp-query (mrcoc (aui1 cui2 aui2 sab cot cof coa kpfstr2) srl cui1
cui :lrl klrl :order (cof asc))
(setq cui2 (ensure-integer cui2))
(when (eql 0 cui2) (setq cui2 nil))
- (make-instance 'ucoc :cui1 cui :cui2 (ensure-integer cui2)
- :soc soc :cot cot :cof (ensure-integer cof) :coa coa
+ (make-instance 'ucoc :cui1 cui :aui1 (ensure-integer aui1)
+ :cui2 (ensure-integer cui2) :aui2 (ensure-integer aui2)
+ :cot cot :cof (ensure-integer cof) :coa coa :sab sab
:pfstr2 kpfstr2)))
(defun find-ucoc-cui2 (cui2 &key (srl *current-srl*))
"Return a list of ucoc for cui2"
(ensure-cui-integer cui2)
- (collect-umlisp-query (mrcoc (cui1 soc cot cof coa kpfstr2) srl cui2
+ (collect-umlisp-query (mrcoc (cui1 aui1 aui2 sab cot cof coa kpfstr2) srl cui2
cui2 :lrl klrl :order (cof asc))
(when (zerop cui2) (setq cui2 nil))
(make-instance 'ucoc :cui1 (ensure-integer cui1) :cui2 cui2
- :soc soc :cot cot :cof (ensure-integer cof) :coa coa
+ :aui1 (ensure-integer aui1) :aui2 (ensure-integer aui2)
+ :sab sab :cot cot :cof (ensure-integer cof) :coa coa
:pfstr2 kpfstr2)))
(defun find-ucon-coc-cui2 (cui2 &key (srl *current-srl*))
(make-instance 'ulo :isn isn :fr (ensure-integer fr) :un un
:sui (ensure-integer sui) :sna sna :soui soui)))
-(defun find-uatx-cui (cui &key (srl *current-srl*))
- "Return a list of uatx for cui"
- (ensure-cui-integer cui)
- (collect-umlisp-query (mratx (sab rel atx) srl cui cui :lrl ksrl)
- (make-instance 'uatx :sab sab :rel rel :atx atx)))
-
(defun find-uterm-cui (cui &key (srl *current-srl*))
"Return a list of uterm for cui"
(ensure-cui-integer cui)
- (collect-umlisp-query (mrcon (lui lat ts kluilrl) srl cui cui
+ (collect-umlisp-query (mrconso (lui lat ts kluilrl) srl cui cui
:lrl kluilrl :distinct t)
(make-instance 'uterm :lui (ensure-integer lui) :cui cui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
(defun find-uterm-lui (lui &key (srl *current-srl*))
"Return a list of uterm for lui"
(ensure-lui-integer lui)
- (collect-umlisp-query (mrcon (cui lat ts kluilrl) srl lui lui
+ (collect-umlisp-query (mrconso (cui lat ts kluilrl) srl lui lui
:lrl kluilrl :distinct t)
(make-instance 'uterm :cui (ensure-integer cui) :lui lui
:lat lat :ts ts :lrl (ensure-integer kluilrl))))
"Return single uterm for cui/lui"
(ensure-cui-integer cui)
(ensure-lui-integer lui)
- (collect-umlisp-query (mrcon (lat ts kluilrl) srl kcuilui
+ (collect-umlisp-query (mrconso (lat ts kluilrl) srl kcuilui
(make-cuilui cui lui)
:lrl kluilrl :single t)
(make-instance 'uterm :cui cui :lui lui :lat lat :ts ts
"Return a list of ustr for cui/lui"
(ensure-cui-integer cui)
(ensure-lui-integer lui)
- (collect-umlisp-query (mrcon (sui stt str lrl) srl kcuilui
- (make-cuilui cui lui) :lrl lrl)
- (make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui
- :cuisui (make-cuisui cui sui) :stt stt :str str
- :lrl (ensure-integer lrl))))
+ (collect-umlisp-query (mrconso (sui stt str suppress ksuilrl) srl kcuilui
+ (make-cuilui cui lui) :lrl ksuilrl)
+ (make-instance 'ustr :sui (ensure-integer sui) :cui cui :lui lui
+ :cuisui (make-cuisui cui sui) :stt stt :str str :suppress suppress
+ :lrl (ensure-integer ksuilrl))))
(defun find-ustr-cuisui (cui sui &key (srl *current-srl*))
"Return the single ustr for cuisui"
(ensure-cui-integer cui)
(ensure-sui-integer sui)
- (collect-umlisp-query (mrcon (lui stt str lrl) srl kcuisui
- (make-cuisui cui sui) :lrl lrl :single t)
+ (collect-umlisp-query (mrconso (lui stt str suppress ksuilrl) srl kcuisui
+ (make-cuisui cui sui) :lrl lsuilrl :single t)
(make-instance 'ustr :sui sui :cui cui :cuisui (make-cuisui cui sui)
- :lui (ensure-integer lui) :stt stt :str str
- :lrl (ensure-integer lrl))))
+ :lui (ensure-integer lui) :stt stt :str str :suppress suppress
+ :lrl (ensure-integer ksuilrl))))
(defun find-ustr-sui (sui &key (srl *current-srl*))
"Return the list of ustr for sui"
(ensure-sui-integer sui)
- (collect-umlisp-query (mrcon (cui lui stt str lrl) srl sui sui
- :lrl lrl)
+ (collect-umlisp-query (mrconso (cui lui stt str suppress ksuilrl) srl sui sui
+ :lrl ksuilrl)
(make-instance 'ustr :sui sui :cui cui :stt stt :str str
:cuisui (make-cuisui (ensure-integer cui) sui)
- :lui (ensure-integer lui) :lrl (ensure-integer lrl))))
+ :suppress suppress
+ :lui (ensure-integer lui) :lrl (ensure-integer ksuilrl))))
(defun find-ustr-sab (sab &key (srl *current-srl*))
"Return the list of ustr for sab"
- (collect-umlisp-query (mrso (kcuisui) srl sab sab :lrl srl)
+ (collect-umlisp-query (mrconso (kcuisui) srl sab sab :lrl srl)
(let ((cuisui (ensure-integer kcuisui)))
(apply #'find-ustr-cuisui
(append
(with-sql-connection (db)
(clsql:map-query
'list
- #'(lambda (cui lui sui stt lrl pfstr)
- (make-instance 'ustr :cui (ensure-integer cui)
- :lui (ensure-integer lui) :sui (ensure-integer sui)
- :stt stt :str pfstr
- :cuisui (make-cuisui (ensure-integer cui)
- (ensure-integer sui))
- :lrl (ensure-integer lrl)))
- (query-string mrcon (cui lui sui stt lrl kpfstr) srl nil nil :lrl lrl
+ #'(lambda (tuple)
+ (destructuring-bind (cui lui sui stt ksuilrl suppress pfstr) tuple
+ (make-instance 'ustr :cui (ensure-integer cui)
+ :lui (ensure-integer lui) :sui (ensure-integer sui)
+ :stt stt :str pfstr
+ :cuisui (make-cuisui (ensure-integer cui)
+ (ensure-integer sui))
+ :suppress suppress
+ :lrl (ensure-integer ksuilrl))))
+ (query-string mrconso (cui lui sui stt ksuilrl kpfstr) srl nil nil :lrl ksuilrl
:distinct t
:order (sui asc))
:database db)))
(defun find-string-sui (sui &key (srl *current-srl*))
"Return the string associated with sui"
(ensure-sui-integer sui)
- (collect-umlisp-query (mrcon (str) srl sui sui :lrl lrl :single t)
+ (collect-umlisp-query (mrconso (str) srl sui sui :lrl ksuilrl :single t)
str))
(defun find-uso-cuisui (cui sui &key (srl *current-srl*))
(ensure-sui-integer sui)
(ensure-cui-integer cui)
- (collect-umlisp-query (mrso (sab code srl tty) srl kcuisui
+ (collect-umlisp-query (mrconso (aui sab code srl tty saui sdui scui) srl kcuisui
(make-cuisui cui sui) :lrl srl)
- (make-instance 'uso :sab sab :code code :srl srl :tty tty)))
+ (make-instance 'uso :aui aui :sab sab :code code :srl srl :tty tty
+ :cui cui :sui sui :saui saui :sdui sdui :scui scui)))
+
+(defun find-uso-aui (aui &key (srl *current-srl*))
+ (ensure-sui-integer aui)
+ (collect-umlisp-query (mrconso (sab cui sui code srl tty saui sdui scui) srl aui
+ aui :lrl srl :single t)
+ (make-instance 'uso :aui aui :cui cui :sab sab :code code :srl srl :tty tty
+ :sui sui :saui saui :sdui sdui :scui scui)))
(defun find-ucxt-cuisui (cui sui &key (srl *current-srl*))
(ensure-cui-integer cui)
(ensure-sui-integer sui)
- (collect-umlisp-query (mrcxt (sab code cxn cxl rnk cxs cui2 hcd rela xc)
+ (collect-umlisp-query (mrcxt (sab rank code cxn cxl cxs cui2 hcd rela xc)
srl kcuisui (make-cuisui cui sui) :lrl ksrl)
- (make-instance 'ucxt :sab sab :code code
+ (make-instance 'ucxt :sab sab :code code
+ :rank rank
:cxn (ensure-integer cxn) :cxl cxl :cxs cxs :hcd hcd
- :rela rela :xc xc :rnk (ensure-integer rnk)
+ :rela rela :xc xc
:cui2 (ensure-integer cui2))))
+(defun find-uhier-cui (cui &key (srl *current-srl*))
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrhier (aui cxn paui sab rela ptr hcd cvf)
+ srl cui cui :lrl ksrl)
+ (make-instance 'uhier :cui cui :aui (ensure-integer aui)
+ :cxn (ensure-integer cxn)
+ :paui (ensure-integer paui)
+ :sab sab :rela rela :ptr ptr :hcd hcd :cvf cvf)))
+
+(defun find-uhier-all (&key (srl *current-srl*))
+ (collect-umlisp-query (mrhier (cui aui cxn paui sab rela ptr hcd cvf)
+ srl nil nil :lrl ksrl)
+ (make-instance 'uhier :cui cui :aui (ensure-integer aui)
+ :cxn (ensure-integer cxn)
+ :paui (ensure-integer paui)
+ :sab sab :rela rela :ptr ptr :hcd hcd :cvf cvf)))
+
(defun find-usat-ui (cui &optional (lui nil) (sui nil) &key (srl *current-srl*))
(ensure-cui-integer cui)
(ensure-lui-integer lui)
"Find usab for a key"
(collect-umlisp-query (mrsab (vcui rcui vsab rsab son sf sver vstart vend imeta
rmeta slc scc srl tfr cfr cxty ttyl atnl lat
- cenc curver sabin) nil nil nil)
+ cenc curver sabin ssn scit) nil nil nil)
(make-instance 'usab :vcui (ensure-integer vcui)
:rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
:sf sf :sver sver :vstart vstart :vend vend :imeta imeta
:rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
:tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
:cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
- :curver curver :sabin sabin)))
+ :curver curver :sabin sabin :ssn ssn :scit scit)))
(defun find-usab-by-key (key-name key)
"Find usab for a key"
(collect-umlisp-query-eval ('mrsab '(vcui rcui vsab rsab son sf sver vstart
- vend imeta rmeta slc scc srl tfr cfr cxty
- ttyl atnl lat cenc curver sabin)
- nil key-name key :single t)
- (make-instance 'usab :vcui (ensure-integer vcui)
- :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
- :sf sf :sver sver :vstart vstart :vend vend :imeta imeta
- :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
- :tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
- :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
- :curver curver :sabin sabin)))
+ vend imeta rmeta slc scc srl tfr cfr cxty
+ ttyl atnl lat cenc curver sabin
+ ssn scit)
+ nil key-name key :single t)
+ (make-instance 'usab :vcui (ensure-integer vcui)
+ :rcui (ensure-integer rcui) :vsab vsab :rsab rsab :son son
+ :sf sf :sver sver :vstart vstart :vend vend :imeta imeta
+ :rmeta rmeta :slc slc :scc scc :srl (ensure-integer srl)
+ :tfr (ensure-integer tfr) :cfr (ensure-integer cfr)
+ :cxty cxty :ttyl ttyl :atnl atnl :lat lat :cenc cenc
+ :curver curver :sabin sabin
+ :ssn ssn :scit scit)))
(defun find-usab-rsab (rsab)
"Find usab for rsab"
(defun find-cui-max ()
(ensure-integer (caar (mutex-sql-query "select max(CUI) from MRCON"))))
+(defun find-umap-cui (cui)
+ (ensure-cui-integer cui)
+ (collect-umlisp-query (mrmap (mapsetsab mapsubsetid maprank fromid fromsid fromexpr
+ fromtype fromrule fromres rel rela toid tosid
+ toexpr totype torule tores maprule maptype
+ mapatn mapatv cvf)
+ nil mapsetcui cui)
+ (make-instance 'umap :mapsetcui cui :mapsetsab mapsetsab :mapsubsetid mapsubsetid
+ :maprank (ensure-integer maprank) :fromid fromid :fromsid fromsid
+ :fromexpr fromexpr :fromtype fromtype :fromrule fromrule :fromres fromres
+ :rel rel :rela rela :toid toid :tosid tosid :toexpr toexpr :totype totype
+ :torule torule :tores tores :maprule maprule :maptype maptype :mapatn mapatn
+ :mapatv mapatv :cvf cvf)))
+
;;;; Cross table find functions
(defun find-ucon-tui (tui &key (srl *current-srl*))
(ignore-errors (sql-execute "drop table USTATS" conn))
(sql-execute "create table USTATS (NAME varchar(160), COUNT bigint, SRL integer)" conn)
- (dotimes (srl 4)
- (insert-ustats-count conn "Concept Count" "MRCON" "distinct CUI" "KCUILRL" srl)
- (insert-ustats-count conn "Term Count" "MRCON" "distinct KCUILUI" "KCUILRL" srl)
- (insert-ustats-count conn "Distinct Term Count" "MRCON" "distinct LUI" "KLUILRL" srl)
- (insert-ustats-count conn "String Count" "MRCON" "*" "LRL" srl)
- (insert-ustats-count conn "Distinct String Count" "MRCON" "distinct SUI" "LRL" srl)
- (insert-ustats-count conn "Associated Expression Count" "MRATX" "*" "KSRL" srl)
+ (dotimes (srl 5)
+ (insert-ustats-count conn "Concept Count" "MRCONSO" "distinct CUI" "KCUILRL" srl)
+ (insert-ustats-count conn "Term Count" "MRCONSO" "distinct KCUILUI" "KCUILRL" srl)
+ (insert-ustats-count conn "Distinct Term Count" "MRCONSO" "distinct LUI" "KLUILRL" srl)
+ (insert-ustats-count conn "String Count" "MRCONSO" "*" "KSUILRL" srl)
+ (insert-ustats-count conn "Distinct String Count" "MRCONSO" "distinct SUI" "KSUILRL" srl)
(insert-ustats-count conn "Context Count" "MRCXT" "*" "KSRL" srl)
(insert-ustats-count conn "Co-occuring Concept Count" "MRCOC" "*" "KLRL" srl)
(insert-ustats-count conn "Definition Count" "MRDEF" "*" "KSRL" srl)
+ #+ignore
(insert-ustats-count conn "Locator Count" "MRLO" "*" "KLRL" srl)
(insert-ustats-count conn "Rank Count" "MRRANK" "*" "KSRL" srl)
(insert-ustats-count conn "Relationship Count" "MRREL" "*" "KSRL" srl)
(insert-ustats-count conn "Semantic Type Count" "MRSTY" "*" "KLRL" srl)
(insert-ustats-count conn "Simple Attribute Count" "MRSAT" "*" "KSRL" srl)
- (insert-ustats-count conn "Source Count" "MRSO" "*" "SRL" srl)
+ (insert-ustats-count conn "Source Abbreviation Count" "MRSAB" "*" "SRL" srl)
(insert-ustats-count conn "Word Index Count" "MRXW_ENG" "*" "KLRL" srl)
(insert-ustats-count conn "Normalized Word Index Count" "MRXNW_ENG" "*" "KLRL" srl)
- (insert-ustats-count conn "Normalized String Index Count" "MRXNS_ENG" "*" "KLRL" srl)
- (insert-ustats-count conn "Bonus Attribute Name Count" "BONUS_ATN" "*" nil srl)
- (insert-ustats-count conn "Bonus Relationship Count" "BONUS_REL" "*" nil srl)
- (insert-ustats-count conn "Bonus Source Abbreviation Count" "BONUS_SAB" "*" nil srl)
- (insert-ustats-count conn "Bonus Term Type Count" "BONUS_TTY" "*" nil srl))
+ (insert-ustats-count conn "Normalized String Index Count" "MRXNS_ENG" "*" "KLRL" srl))
(sql-execute "create index USTATS_SRL on USTATS (SRL)" conn))
(find-ustats-all))
projects / umlisp.git / blobdiff