doc/ctsim.tex

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   2 \usepackage{graphicx}
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   5 \usepackage{mysober}
   6 \usepackage{mytitle}
   7 \usepackage{verbatim}
   8 \usepackage{makeidx}
   9 %\usepackage{times}
  10 \usepackage{hyperref}
  11 \input{psbox.tex}
  12
  13 \latexonly{\includeonly{ctsim-concepts,ctsim-install,ctsim-gui,ctsim-textui,ctsim-web,ctsim-appendix}}
  14 \hyphenation{poly-gon-al}
  15
  16 \newcommand{\ctsim}{\texttt{CTSim}}
  17 \newcommand{\ctsimtext}{\texttt{CTSimText}}
  18 \newcommand{\usage}{\textbf{Usage}\par}
  19
  20 \newcommand{\commandref}[2]{\helpref{{\tt $\backslash$#1}}{#2}}%
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  25
  26 \newcommand{\manvernum}[0]{0.6}
  27 \newcommand{\manver}[0]{v\manvernum}
  28 \newcommand{\mandate}[0]{February 16, 2001}
  29 \newcommand{\ctsimfooter}{\setfooter{\thepage}{}{}{\small Manual \manver}{\small \mandate}{\thepage}}
  30 \newcommand{\doublehyphen}[1]{-\,-\texttt{#1}}
  31 \newcommand{\ctsimvernum}[0]{3.0.0}
  32 \newcommand{\ctsimver}[0]{CTSim \ctsimvernum}
  33 \newcommand{\ctsimheadtitle}{\ctsimver\ Manual}
  34
  35 \latexignore{\newcommand{\sqrt}[2]{sqrt(#2)}}
  36
  37 \parskip=10pt%
  38 \parindent=0pt%
  39 %\backgroundcolour{255;255;255}\textcolour{0;0;0}% Has an effect in HTML only
  40 \title{CTSim 3.0 User Manual}%
  41 \author{Kevin Rosenberg, M.D.}%
  42 \makeindex%
  43
  44 \begin{document}
  45 \textheight=9in
  46 \textwidth=6.5in
  47 \evensidemargin=0in
  48 \oddsidemargin=0in
  49
  50 \maketitle
  51 \pagestyle{fancyplain}
  52 \pagenumbering{roman}
  53
  54 \chapter*{Copyright notice}%
  55 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
  56 \ctsimfooter
  57
  58 Copyright (c) 1983-2001 Kevin Rosenberg, M.D.
  59
  60 Permission to use, copy, modify, and distribute this software and its
  61 documentation for any purpose is hereby granted without fee, provided that the
  62 above copyright notice, author statement and this permission notice appear in
  63 all copies of this software and related documentation.
  64
  65 THE SOFTWARE IS PROVIDED ``AS-IS'' AND WITHOUT WARRANTY OF ANY KIND, EXPRESS,
  66 IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY WARRANTY OF
  67 MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.
  68
  69 IN NO EVENT SHALL KEVIN ROSENBERG BE LIABLE FOR ANY
  70 SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND, OR
  71 ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
  72 WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY
  73 OF LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
  74 PERFORMANCE OF THIS SOFTWARE.
  75
  76
  77 \chapter*{Acknowledgements}
  78 \setheader{{\it COPYRIGHT}}{}{}{\ctsimheadtitle}{}{{\it COPYRIGHT}}%
  79 \setfooter{\thepage}{}{}{}{\manver}{\thepage}%
  80
  81 \textbf{Ian Kay, Ph.D.}\\
  82 Special thanks to Dr. Kay for contributing portions to this manual. Dr. Kay has assisted the
  83 development of \ctsim\ with bug reports and fixes.
  84
  85 \textbf{Gabor T. Herman, Ph.D.}\\
  86 Dr. Herman's publications on computed tomography inspired me to
  87 create the initial version \ctsim\ in 1983. Dr. Herman
  88 has graciously permitted use of his
  89 copyrighted head phantom for use in \ctsim.
  90
  91
  92 \setheader{{\it CONTENTS}}{}{}{\ctsimheadtitle}{}{{\it CONTENTS}}%
  93 \ctsimfooter
  94 \parskip=2pt
  95 \tableofcontents%
  96
  97 \parskip=10pt
  98 \chapter{Introduction}\label{IDH_INTRODUCTION}
  99 \pagenumbering{arabic}
 100 \setheader{{\it CHAPTER \thechapter}}{}{}{\ctsimheadtitle}{}{{\it CHAPTER \thechapter}}%
 101 \ctsimfooter
 102
 103
 104 \centerline{\image{3cm;3cm}{logo-huge.eps}}
 105 Computed tomography is a technique for estimating the interior of an
 106 object from measurements of radiation collected around the object. This
 107 radiation can be either projected through or emitted from the
 108 object. \ctsim\ simulates the process of projecting X-rays
 109 through a phantom object. \ctsim\ can then reconstruct the
 110 interior of the object from those projections. \ctsim\ integrates
 111 numerous visualization and analytic tools.
 112
 113 This manual begins with an introduction into the concepts of
 114 \ctsim. Next, the graphical, command-line, and web shells are
 115 presented. Finally, the installation of \ctsim\ is discussed.
 116
 117 I hope that you enjoy \ctsim!
 118
 119 \include{ctsim-concepts}
 120 \include{ctsim-gui}
 121 \include{ctsim-textui}
 122 \include{ctsim-web}
 123 \include{ctsim-install}
 124 \include{ctsim-appendix}
 125
 126 \newpage
 127
 128 \bibliographystyle{plain}
 129 \bibliography{ctsim}
 130 \addcontentsline{toc}{chapter}{Bibliography}
 131 \setheader{{\it REFERENCES}}{}{}{\ctsimheadtitle}{}{{\it REFERENCES}}
 132 \ctsimfooter
 133
 134 \newpage
 135 \addcontentsline{toc}{chapter}{Index}
 136 \setheader{{\it INDEX}}{}{}{\ctsimheadtitle}{}{{\it INDEX}} %
 137 \ctsimfooter
 138 \printindex
 139
 140 \end{document}